Heatmap: Cluster_39 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
- - - - - - - - - -0.71 0.71 2.17 -0.18 - - - -0.42 - - - 1.17 0.83 -1.28 - 3.37 1.5
- - - - - - - - - - - - - - - - - - - - 1.26 - - 2.63 -0.17 4.05
- - - - - - - - - - - - - 2.72 - - - - - - - - - - 2.63 3.73
- - - - - - - - 1.79 1.66 1.75 2.84 - - - - - - - - - - 1.08 - - 2.75
- - - - - - - - - - - - - - - - 2.61 - - - 1.4 - - - 1.71 3.81
- - - - - - - - - 0.25 1.27 1.43 0.23 1.72 - 1.23 - - - 0.96 1.4 - - - 0.66 2.76
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
- - - - - - - - - 0.68 - - - - - - - - 0.44 - -0.14 2.47 2.14 2.4 0.12 2.54
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
1.73 1.14 - -1.27 - 1.8 2.3 - 0.02 - - - 0.89 - - - - - - -0.41 - 1.34 - - - 2.46
- - - -0.26 -0.15 -0.33 -0.33 0.78 - - - - - - - - - 0.65 1.97 -0.72 - 0.34 - 1.85 2.05 2.55
1.62 - - - - - - - - - - 1.57 - - - - - - 3.13 - - - - - - 3.49
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
- - - - - - - - - - - - - - - - - - - - 2.3 - - - - 4.4
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
- - - - - - - - - - - - - - - - - - - 2.81 2.75 - - - - 3.61
- - - - - - - - - - 2.08 - - - - - - - - - 3.43 - - - 2.42 2.49
1.08 - - - -1.33 -1.22 - 1.83 - - -0.28 - - 1.01 - - - - -1.24 -1.32 - -1.48 1.29 - 0.42 3.55
-0.91 -1.19 -0.79 -1.14 0.87 -0.76 -0.72 -0.72 -0.12 0.32 1.05 0.69 0.14 -0.75 -1.55 -2.01 -0.82 0.09 -0.75 -1.81 -0.18 1.1 -0.64 - 0.12 2.31
- - - - - 1.27 -0.88 2.04 - - - - 0.0 - - 0.81 - - - -0.63 - - - - - 3.96
- - - - - - - - 2.15 - - - - - - - - - - - - 1.91 - - 2.52 3.59
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
-0.5 -0.35 - -0.53 -0.3 - -0.04 - -0.5 - 0.46 - - 1.2 - - -0.52 -0.05 -0.84 - 1.2 1.22 -0.63 - 1.2 2.98
- - - 2.73 - - - - 2.63 - - - - - - - - - 2.29 - - - - - 2.03 2.07
-0.44 - - 0.35 1.04 -1.71 -0.13 1.08 1.47 0.18 2.06 0.37 - -0.73 - -1.83 - -2.32 - -0.92 -0.66 -2.12 0.94 -1.31 -0.4 1.88
1.56 -0.03 - - 0.89 -0.15 2.48 0.96 -0.12 1.37 - -0.05 - -0.33 - - - - - - - - -0.82 - -0.78 2.43
- - - - - - - - - 1.46 - - - - - - - - - - -1.02 - 1.92 - -0.7 4.2
- - - - 1.43 1.14 - - 1.23 - - - 2.63 - 1.15 - - 1.09 - - 1.8 - - - - 2.24
-1.09 0.17 -0.79 -0.83 1.79 - - -0.76 1.68 -0.87 0.76 - - 1.72 -0.87 - - - - - -1.23 - - - 1.55 2.72
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
- -0.14 -0.33 - 1.01 0.26 0.12 -0.31 -1.29 -1.42 1.44 1.34 0.53 0.05 - 0.56 - 0.37 -1.69 -1.66 - - 0.81 0.08 0.6 1.57
-2.27 0.68 - 1.77 -1.04 - - 0.76 0.24 -1.36 -2.3 -0.36 -1.86 -1.52 - - - -0.5 - - - 0.72 1.57 1.99 0.77 2.14
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
- - - - -0.85 - 0.36 -0.73 -0.76 - -0.74 -0.66 - 2.01 0.32 -0.61 - -0.18 1.13 - -1.69 -1.15 -1.13 -0.15 -1.37 3.35
- - - 0.29 - 0.22 - - - - - - - -0.38 - - - - -0.15 0.98 2.15 1.54 - 0.81 0.59 3.23
-0.49 -1.9 -0.4 -0.25 -0.23 -0.68 -1.47 -2.11 -3.08 0.18 0.23 0.03 0.46 0.11 -0.89 0.02 -0.62 -0.28 -1.73 -3.44 -1.68 1.11 0.35 0.35 2.12 1.41
- 1.79 - - - - - 1.86 - - - - - - - - - - - - 1.96 - 1.27 - - 3.66
- - 1.43 - - - - 1.46 - - - 1.54 - - - - 1.66 - - - - - - - - 3.86
-1.03 - - - - -0.77 0.09 -1.13 - - - -0.92 -1.12 -0.67 1.09 -1.12 - 0.24 - - 2.2 1.52 -1.39 0.28 2.19 2.14
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
- -1.16 -1.4 1.83 -1.22 - 0.19 0.52 0.96 -1.49 -0.44 - - - - - - 1.76 1.05 -0.2 -0.26 -1.66 0.15 -0.51 1.68 1.62
- - - - - - - - - - - - - - - - - 3.72 - - - - - - - 3.68
- - - - - - - - 3.05 2.88 - - - - - - - 2.39 - - - - - - - 2.35
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
0.29 - - -0.33 -0.22 - - - - 1.5 1.16 1.69 -0.01 -1.0 - - -0.44 - - - 0.39 - 1.25 1.78 1.29 1.61
0.84 - 1.1 - -0.52 - - 0.99 - -0.34 - - 0.22 - - - - 0.95 1.23 0.58 1.8 -0.61 -0.6 - 1.17 2.2
- -0.7 - -1.99 - - -1.94 0.64 - -2.06 - -0.86 -0.51 -2.53 - -1.06 - 1.47 1.9 0.47 0.88 -0.27 0.22 - 1.99 2.45
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - 3.1 - - - - - - - - - - - - - - - - - - 4.12
- - - - - - - - - - - - - 2.95 - - - 2.46 - - - 2.21 - - - 3.03
- - - - - - - - - - - - - - - - - - - - - - - - - 4.7
0.9 - 0.21 - -0.09 - - - - 0.16 1.17 - - - - - - - - - 1.41 0.95 1.7 1.5 1.55 2.34
- - - - 1.6 - - - - - - - - - - - - 1.36 - - 1.46 - - - 2.29 3.67
0.53 - - - - - - - - - - - 1.24 - - - - - 0.48 - 3.42 - 2.05 - 0.22 2.26
0.77 - - 0.27 - - - -1.43 -0.33 -0.4 0.99 0.36 0.68 0.03 - -0.25 -1.34 -1.91 -1.67 -1.69 -0.11 0.33 0.58 -0.42 2.1 2.15
- - - - - - - - - - - - - - - - - 2.73 - - - - - - - 4.28
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - 3.01 - - - - - - - - - - 2.56 3.59

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.