Coexpression cluster: Cluster_98 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0008168 methyltransferase activity 12.35% (10/81) 4.38 0.0 0.0
GO:0016741 transferase activity, transferring one-carbon groups 12.35% (10/81) 4.28 0.0 0.0
GO:0016070 RNA metabolic process 12.35% (10/81) 3.38 0.0 2e-06
GO:0006396 RNA processing 8.64% (7/81) 3.97 0.0 1.4e-05
GO:0006139 nucleobase-containing compound metabolic process 16.05% (13/81) 2.48 1e-06 1.8e-05
GO:0046483 heterocycle metabolic process 16.05% (13/81) 2.34 1e-06 3.6e-05
GO:1901360 organic cyclic compound metabolic process 16.05% (13/81) 2.31 2e-06 3.6e-05
GO:0090304 nucleic acid metabolic process 12.35% (10/81) 2.79 2e-06 3.8e-05
GO:0006725 cellular aromatic compound metabolic process 16.05% (13/81) 2.35 1e-06 4e-05
GO:0034470 ncRNA processing 6.17% (5/81) 4.45 3e-06 5.5e-05
GO:0003723 RNA binding 8.64% (7/81) 3.38 5e-06 7.6e-05
GO:0034641 cellular nitrogen compound metabolic process 16.05% (13/81) 2.05 1.3e-05 0.000191
GO:0034660 ncRNA metabolic process 6.17% (5/81) 3.77 3.2e-05 0.000428
GO:0006364 rRNA processing 3.7% (3/81) 5.11 8.4e-05 0.000972
GO:0016072 rRNA metabolic process 3.7% (3/81) 5.11 8.4e-05 0.000972
GO:0008173 RNA methyltransferase activity 3.7% (3/81) 5.04 9.9e-05 0.001069
GO:0072528 pyrimidine-containing compound biosynthetic process 2.47% (2/81) 6.45 0.000204 0.002077
GO:0016740 transferase activity 17.28% (14/81) 1.54 0.000272 0.002615
GO:0072527 pyrimidine-containing compound metabolic process 2.47% (2/81) 6.19 0.000305 0.002779
GO:0016763 transferase activity, transferring pentosyl groups 2.47% (2/81) 5.97 0.000426 0.003685
GO:0003676 nucleic acid binding 12.35% (10/81) 1.79 0.00059 0.004641
GO:0009451 RNA modification 3.7% (3/81) 4.19 0.000587 0.004838
GO:0003674 molecular_function 44.44% (36/81) 0.69 0.000844 0.006347
GO:0003824 catalytic activity 28.4% (23/81) 0.92 0.001472 0.010185
GO:0140098 catalytic activity, acting on RNA 4.94% (4/81) 3.03 0.001457 0.010502
GO:0006221 pyrimidine nucleotide biosynthetic process 1.23% (1/81) 7.77 0.004566 0.016806
GO:0009245 lipid A biosynthetic process 1.23% (1/81) 7.77 0.004566 0.016806
GO:0006220 pyrimidine nucleotide metabolic process 1.23% (1/81) 7.77 0.004566 0.016806
GO:0003883 CTP synthase activity 1.23% (1/81) 7.77 0.004566 0.016806
GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity 1.23% (1/81) 7.77 0.004566 0.016806
GO:0004797 thymidine kinase activity 1.23% (1/81) 7.77 0.004566 0.016806
GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity 1.23% (1/81) 7.77 0.004566 0.016806
GO:1901271 lipooligosaccharide biosynthetic process 1.23% (1/81) 7.77 0.004566 0.016806
GO:1901269 lipooligosaccharide metabolic process 1.23% (1/81) 7.77 0.004566 0.016806
GO:0046493 lipid A metabolic process 1.23% (1/81) 7.77 0.004566 0.016806
GO:0019856 pyrimidine nucleobase biosynthetic process 1.23% (1/81) 7.77 0.004566 0.016806
GO:0000178 exosome (RNase complex) 1.23% (1/81) 7.77 0.004566 0.016806
GO:0019206 nucleoside kinase activity 1.23% (1/81) 7.77 0.004566 0.016806
GO:1905354 exoribonuclease complex 1.23% (1/81) 7.77 0.004566 0.016806
GO:0019213 deacetylase activity 1.23% (1/81) 7.77 0.004566 0.016806
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 1.23% (1/81) 7.77 0.004566 0.016806
GO:0006206 pyrimidine nucleobase metabolic process 1.23% (1/81) 7.77 0.004566 0.016806
GO:0004590 orotidine-5'-phosphate decarboxylase activity 1.23% (1/81) 7.77 0.004566 0.016806
GO:0019136 deoxynucleoside kinase activity 1.23% (1/81) 7.77 0.004566 0.016806
GO:0032259 methylation 2.47% (2/81) 4.25 0.004895 0.017642
GO:0009982 pseudouridine synthase activity 2.47% (2/81) 4.69 0.002678 0.017821
GO:0005488 binding 27.16% (22/81) 0.79 0.005642 0.01992
GO:0001522 pseudouridine synthesis 2.47% (2/81) 4.45 0.003709 0.023763
GO:0005515 protein binding 11.11% (9/81) 1.38 0.007695 0.026623
GO:0016866 intramolecular transferase activity 2.47% (2/81) 4.32 0.004482 0.027695
GO:0008033 tRNA processing 2.47% (2/81) 3.87 0.008244 0.027965
GO:0019674 NAD metabolic process 1.23% (1/81) 6.77 0.009111 0.028146
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 1.23% (1/81) 6.77 0.009111 0.028146
GO:0016423 tRNA (guanine) methyltransferase activity 1.23% (1/81) 6.77 0.009111 0.028146
GO:0019205 nucleobase-containing compound kinase activity 1.23% (1/81) 6.77 0.009111 0.028146
GO:0009435 NAD biosynthetic process 1.23% (1/81) 6.77 0.009111 0.028146
GO:0009112 nucleobase metabolic process 1.23% (1/81) 6.19 0.013635 0.039315
GO:0046112 nucleobase biosynthetic process 1.23% (1/81) 6.19 0.013635 0.039315
GO:0008175 tRNA methyltransferase activity 1.23% (1/81) 6.19 0.013635 0.039315
GO:0008170 N-methyltransferase activity 1.23% (1/81) 6.19 0.013635 0.039315
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_61 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_143 0.035 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_182 0.019 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_45 0.019 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_48 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_121 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_67 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_284 0.022 Gene family Compare
Oryza sativa HCCA cluster Cluster_306 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_335 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_164 0.02 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_100 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_141 0.024 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_152 0.027 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_272 0.022 Gene family Compare
Vitis vinifera HCCA cluster Cluster_148 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_53 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_137 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_244 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_259 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_297 0.024 Gene family Compare
Zea mays HCCA cluster Cluster_331 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_346 0.016 Gene family Compare
Sequences (81) (download table)

InterPro Domains

GO Terms

Family Terms