Coexpression cluster: Cluster_103 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006259 DNA metabolic process 10.74% (13/121) 4.39 0.0 0.0
GO:0006270 DNA replication initiation 4.96% (6/121) 6.61 0.0 0.0
GO:0090304 nucleic acid metabolic process 10.74% (13/121) 2.67 0.0 6e-06
GO:0006260 DNA replication 4.13% (5/121) 5.13 0.0 9e-06
GO:0003677 DNA binding 9.09% (11/121) 2.56 3e-06 7.6e-05
GO:0046483 heterocycle metabolic process 11.57% (14/121) 1.94 1.7e-05 0.000346
GO:0006725 cellular aromatic compound metabolic process 11.57% (14/121) 1.95 1.6e-05 0.000379
GO:1901360 organic cyclic compound metabolic process 11.57% (14/121) 1.91 2.2e-05 0.000395
GO:0006139 nucleobase-containing compound metabolic process 10.74% (13/121) 1.96 3.1e-05 0.000486
GO:0003896 DNA primase activity 1.65% (2/121) 7.2 4.6e-05 0.000596
GO:0006269 DNA replication, synthesis of RNA primer 1.65% (2/121) 7.2 4.6e-05 0.000596
GO:0034641 cellular nitrogen compound metabolic process 11.57% (14/121) 1.64 0.000155 0.00184
GO:0044260 cellular macromolecule metabolic process 14.88% (18/121) 1.34 0.000244 0.00266
GO:0009059 macromolecule biosynthetic process 5.79% (7/121) 2.34 0.000487 0.004935
GO:0140097 catalytic activity, acting on DNA 2.48% (3/121) 3.53 0.002194 0.020765
GO:0003676 nucleic acid binding 9.09% (11/121) 1.35 0.003972 0.03525
GO:0043170 macromolecule metabolic process 14.88% (18/121) 0.97 0.0044 0.036756
GO:0005634 nucleus 3.31% (4/121) 2.55 0.00488 0.038495
GO:0003924 GTPase activity 2.48% (3/121) 3.08 0.005362 0.040077
GO:0006974 cellular response to DNA damage stimulus 2.48% (3/121) 2.9 0.007621 0.041622
GO:0051716 cellular response to stimulus 2.48% (3/121) 2.9 0.007621 0.041622
GO:0033554 cellular response to stress 2.48% (3/121) 2.9 0.007621 0.041622
GO:0016779 nucleotidyltransferase activity 2.48% (3/121) 2.87 0.007983 0.041983
GO:0046653 tetrahydrofolate metabolic process 0.83% (1/121) 7.2 0.00682 0.042108
GO:0046654 tetrahydrofolate biosynthetic process 0.83% (1/121) 7.2 0.00682 0.042108
GO:0004146 dihydrofolate reductase activity 0.83% (1/121) 7.2 0.00682 0.042108
GO:0034645 cellular macromolecule biosynthetic process 4.13% (5/121) 1.99 0.008777 0.044513
GO:0006281 DNA repair 2.48% (3/121) 3.0 0.006272 0.044534
GO:0034062 5'-3' RNA polymerase activity 1.65% (2/121) 3.67 0.010629 0.045737
GO:0097747 RNA polymerase activity 1.65% (2/121) 3.67 0.010629 0.045737
GO:0043231 intracellular membrane-bounded organelle 3.31% (4/121) 2.24 0.010309 0.047221
GO:0043227 membrane-bounded organelle 3.31% (4/121) 2.24 0.010309 0.047221
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.65% (2/121) 3.74 0.009748 0.047731
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_27 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_145 0.048 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_179 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_186 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_250 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_43 0.052 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_154 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_160 0.039 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_1 0.025 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_18 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_29 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_35 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_37 0.029 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_42 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_53 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_149 0.028 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_175 0.031 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_52 0.083 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_74 0.024 Archaeplastida Compare
Gingko biloba HCCA Cluster_151 0.103 Archaeplastida Compare
Gingko biloba HCCA Cluster_245 0.042 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_1 0.101 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_154 0.037 Archaeplastida Compare
Oryza sativa HCCA Cluster_11 0.032 Archaeplastida Compare
Oryza sativa HCCA Cluster_165 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_223 0.052 Archaeplastida Compare
Oryza sativa HCCA Cluster_224 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_357 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_260 0.055 Archaeplastida Compare
Picea abies HCCA Cluster_31 0.048 Archaeplastida Compare
Picea abies HCCA Cluster_199 0.1 Archaeplastida Compare
Picea abies HCCA Cluster_540 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_85 0.037 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_122 0.043 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_203 0.054 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_235 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_68 0.08 Archaeplastida Compare
Vitis vinifera HCCA Cluster_103 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_48 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_163 0.037 Archaeplastida Compare
Zea mays HCCA Cluster_247 0.036 Archaeplastida Compare
Zea mays HCCA Cluster_339 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_344 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_351 0.047 Archaeplastida Compare
Sequences (121) (download table)

InterPro Domains

GO Terms

Family Terms