Coexpression cluster: Cluster_37 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 11.11% (11/99) 3.23 0.0 5e-06
GO:0090304 nucleic acid metabolic process 11.11% (11/99) 2.64 2e-06 0.000161
GO:0140098 catalytic activity, acting on RNA 6.06% (6/99) 3.33 3e-05 0.001031
GO:0006139 nucleobase-containing compound metabolic process 12.12% (12/99) 2.07 2.8e-05 0.001155
GO:0008033 tRNA processing 4.04% (4/99) 4.58 2.2e-05 0.001163
GO:0006396 RNA processing 6.06% (6/99) 3.46 1.8e-05 0.00125
GO:0009451 RNA modification 4.04% (4/99) 4.32 4.7e-05 0.001392
GO:0046483 heterocycle metabolic process 12.12% (12/99) 1.94 6.7e-05 0.001552
GO:0006725 cellular aromatic compound metabolic process 12.12% (12/99) 1.94 6.5e-05 0.001687
GO:1901360 organic cyclic compound metabolic process 12.12% (12/99) 1.91 8.3e-05 0.001737
GO:0009982 pseudouridine synthase activity 3.03% (3/99) 4.98 0.000108 0.002048
GO:0001522 pseudouridine synthesis 3.03% (3/99) 4.75 0.000179 0.00287
GO:0034470 ncRNA processing 4.04% (4/99) 3.84 0.000173 0.002991
GO:0001882 nucleoside binding 5.05% (5/99) 3.04 0.000361 0.003264
GO:0032549 ribonucleoside binding 5.05% (5/99) 3.04 0.000361 0.003264
GO:0005525 GTP binding 5.05% (5/99) 3.04 0.000361 0.003264
GO:0019001 guanyl nucleotide binding 5.05% (5/99) 3.04 0.000361 0.003264
GO:0032550 purine ribonucleoside binding 5.05% (5/99) 3.04 0.000361 0.003264
GO:0032561 guanyl ribonucleotide binding 5.05% (5/99) 3.04 0.000361 0.003264
GO:0001883 purine nucleoside binding 5.05% (5/99) 3.04 0.000361 0.003264
GO:0016866 intramolecular transferase activity 3.03% (3/99) 4.61 0.00024 0.003571
GO:0034641 cellular nitrogen compound metabolic process 12.12% (12/99) 1.64 0.000443 0.003689
GO:0016741 transferase activity, transferring one-carbon groups 5.05% (5/99) 2.99 0.000426 0.003693
GO:0008168 methyltransferase activity 5.05% (5/99) 3.09 0.000304 0.00421
GO:0006399 tRNA metabolic process 4.04% (4/99) 3.58 0.00035 0.004551
GO:0022834 ligand-gated channel activity 2.02% (2/99) 5.68 0.000636 0.004722
GO:0015276 ligand-gated ion channel activity 2.02% (2/99) 5.68 0.000636 0.004722
GO:0005230 extracellular ligand-gated ion channel activity 2.02% (2/99) 5.68 0.000636 0.004722
GO:0034660 ncRNA metabolic process 4.04% (4/99) 3.16 0.001043 0.00748
GO:0003723 RNA binding 5.05% (5/99) 2.61 0.001397 0.009686
GO:1901363 heterocyclic compound binding 19.19% (19/99) 1.04 0.001861 0.012095
GO:0097159 organic cyclic compound binding 19.19% (19/99) 1.04 0.001861 0.012095
GO:0022839 ion gated channel activity 2.02% (2/99) 4.79 0.00231 0.014132
GO:0022836 gated channel activity 2.02% (2/99) 4.79 0.00231 0.014132
GO:0043170 macromolecule metabolic process 16.16% (16/99) 1.09 0.003134 0.018627
GO:0004540 ribonuclease activity 2.02% (2/99) 4.49 0.003515 0.020311
GO:0006807 nitrogen compound metabolic process 18.18% (18/99) 0.98 0.00378 0.021252
GO:0008173 RNA methyltransferase activity 2.02% (2/99) 4.16 0.005486 0.030027
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.02% (2/99) 4.03 0.006621 0.035314
GO:0034062 5'-3' RNA polymerase activity 2.02% (2/99) 3.96 0.007226 0.035785
GO:0032259 methylation 2.02% (2/99) 3.96 0.007226 0.035785
GO:0097747 RNA polymerase activity 2.02% (2/99) 3.96 0.007226 0.035785
GO:0016853 isomerase activity 3.03% (3/99) 2.84 0.008514 0.041182
GO:0003676 nucleic acid binding 9.09% (9/99) 1.35 0.008772 0.041466
GO:0005488 binding 25.25% (25/99) 0.69 0.009044 0.041805
GO:0030488 tRNA methylation 1.01% (1/99) 6.49 0.01113 0.044519
GO:0000213 tRNA-intron endonuclease activity 1.01% (1/99) 6.49 0.01113 0.044519
GO:0031515 tRNA (m1A) methyltransferase complex 1.01% (1/99) 6.49 0.01113 0.044519
GO:0004549 tRNA-specific ribonuclease activity 1.01% (1/99) 6.49 0.01113 0.044519
GO:0034708 methyltransferase complex 1.01% (1/99) 6.49 0.01113 0.044519
GO:0043527 tRNA methyltransferase complex 1.01% (1/99) 6.49 0.01113 0.044519
GO:0044237 cellular metabolic process 17.17% (17/99) 0.87 0.010651 0.048159
GO:0038023 signaling receptor activity 1.01% (1/99) 5.9 0.016649 0.048773
GO:0030594 neurotransmitter receptor activity 1.01% (1/99) 5.9 0.016649 0.048773
GO:0051260 protein homooligomerization 1.01% (1/99) 5.9 0.016649 0.048773
GO:0022835 transmitter-gated channel activity 1.01% (1/99) 5.9 0.016649 0.048773
GO:0022824 transmitter-gated ion channel activity 1.01% (1/99) 5.9 0.016649 0.048773
GO:0008066 glutamate receptor activity 1.01% (1/99) 5.9 0.016649 0.048773
GO:0004970 ionotropic glutamate receptor activity 1.01% (1/99) 5.9 0.016649 0.048773
GO:0004888 transmembrane signaling receptor activity 1.01% (1/99) 5.9 0.016649 0.048773
GO:0060089 molecular transducer activity 1.01% (1/99) 5.9 0.016649 0.048773
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 1.01% (1/99) 5.9 0.016649 0.048773
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation 1.01% (1/99) 5.9 0.016649 0.048773
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_21 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_90 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_214 0.02 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_199 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_67 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_85 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_138 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_50 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_148 0.02 Gene family Compare
Vitis vinifera HCCA cluster Cluster_216 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_53 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_233 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_307 0.014 Gene family Compare
Sequences (99) (download table)

InterPro Domains

GO Terms

Family Terms