Coexpression cluster: Cluster_10 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 16.67% (24/144) 3.82 0.0 0.0
GO:0090304 nucleic acid metabolic process 16.67% (24/144) 3.31 0.0 0.0
GO:0097659 nucleic acid-templated transcription 7.64% (11/144) 5.28 0.0 0.0
GO:0006351 transcription, DNA-templated 7.64% (11/144) 5.28 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 18.06% (26/144) 2.71 0.0 0.0
GO:0046483 heterocycle metabolic process 18.06% (26/144) 2.58 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 18.06% (26/144) 2.59 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 18.06% (26/144) 2.55 0.0 0.0
GO:0032774 RNA biosynthetic process 7.64% (11/144) 4.68 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 18.06% (26/144) 2.29 0.0 0.0
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.86% (7/144) 5.29 0.0 0.0
GO:0034062 5'-3' RNA polymerase activity 4.86% (7/144) 5.23 0.0 0.0
GO:0097747 RNA polymerase activity 4.86% (7/144) 5.23 0.0 0.0
GO:0003676 nucleic acid binding 15.97% (23/144) 2.16 0.0 0.0
GO:0006364 rRNA processing 4.17% (6/144) 5.28 0.0 0.0
GO:0016072 rRNA metabolic process 4.17% (6/144) 5.28 0.0 0.0
GO:0034470 ncRNA processing 5.56% (8/144) 4.3 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 8.33% (12/144) 2.89 0.0 1e-06
GO:0018130 heterocycle biosynthetic process 9.03% (13/144) 2.73 0.0 1e-06
GO:0006396 RNA processing 6.25% (9/144) 3.5 0.0 1e-06
GO:1901362 organic cyclic compound biosynthetic process 9.03% (13/144) 2.67 0.0 2e-06
GO:0034660 ncRNA metabolic process 5.56% (8/144) 3.62 0.0 3e-06
GO:0034645 cellular macromolecule biosynthetic process 7.64% (11/144) 2.87 0.0 3e-06
GO:0019438 aromatic compound biosynthetic process 8.33% (12/144) 2.66 0.0 5e-06
GO:0016779 nucleotidyltransferase activity 4.86% (7/144) 3.85 1e-06 5e-06
GO:0005488 binding 31.94% (46/144) 1.04 1e-06 5e-06
GO:0009059 macromolecule biosynthetic process 7.64% (11/144) 2.74 1e-06 7e-06
GO:0140098 catalytic activity, acting on RNA 5.56% (8/144) 3.2 3e-06 2.2e-05
GO:0009058 biosynthetic process 11.11% (16/144) 1.88 7e-06 6e-05
GO:0044271 cellular nitrogen compound biosynthetic process 9.03% (13/144) 2.14 9e-06 6.8e-05
GO:0009451 RNA modification 3.47% (5/144) 4.1 1e-05 7.8e-05
GO:0001522 pseudouridine synthesis 2.78% (4/144) 4.62 1.8e-05 0.000136
GO:1901363 heterocyclic compound binding 20.83% (30/144) 1.16 2.2e-05 0.000152
GO:0097159 organic cyclic compound binding 20.83% (30/144) 1.16 2.2e-05 0.000152
GO:0003723 RNA binding 5.56% (8/144) 2.75 2.7e-05 0.000182
GO:0044249 cellular biosynthetic process 9.72% (14/144) 1.87 3e-05 0.000199
GO:1901576 organic substance biosynthetic process 9.72% (14/144) 1.81 4.7e-05 0.000304
GO:0000428 DNA-directed RNA polymerase complex 1.39% (2/144) 6.94 6.5e-05 0.000389
GO:0005666 RNA polymerase III complex 1.39% (2/144) 6.94 6.5e-05 0.000389
GO:0055029 nuclear DNA-directed RNA polymerase complex 1.39% (2/144) 6.94 6.5e-05 0.000389
GO:0043170 macromolecule metabolic process 17.36% (25/144) 1.2 7.8e-05 0.000451
GO:0044237 cellular metabolic process 19.44% (28/144) 1.06 0.000146 0.000829
GO:0006383 transcription by RNA polymerase III 1.39% (2/144) 6.36 0.000195 0.001081
GO:0008168 methyltransferase activity 4.17% (6/144) 2.82 0.000214 0.00116
GO:0006807 nitrogen compound metabolic process 18.75% (27/144) 1.04 0.000222 0.001176
GO:0016741 transferase activity, transferring one-carbon groups 4.17% (6/144) 2.71 0.000319 0.001651
GO:0009982 pseudouridine synthase activity 2.08% (3/144) 4.44 0.000328 0.001659
GO:0008152 metabolic process 21.53% (31/144) 0.91 0.000373 0.001848
GO:0044238 primary metabolic process 19.44% (28/144) 0.97 0.000393 0.001869
GO:0030880 RNA polymerase complex 1.39% (2/144) 5.94 0.000388 0.001886
GO:0003674 molecular_function 40.28% (58/144) 0.56 0.000529 0.002471
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.39% (2/144) 5.62 0.000644 0.002947
GO:0016866 intramolecular transferase activity 2.08% (3/144) 4.07 0.00072 0.003234
GO:0032259 methylation 2.08% (3/144) 4.01 0.000823 0.003629
GO:0051540 metal cluster binding 2.78% (4/144) 3.19 0.000961 0.003943
GO:0051536 iron-sulfur cluster binding 2.78% (4/144) 3.19 0.000961 0.003943
GO:0030684 preribosome 1.39% (2/144) 5.36 0.000961 0.004083
GO:0071704 organic substance metabolic process 19.44% (28/144) 0.89 0.000956 0.004135
GO:1990234 transferase complex 2.08% (3/144) 3.83 0.001187 0.00479
GO:1902494 catalytic complex 2.78% (4/144) 2.74 0.003085 0.012239
GO:0042254 ribosome biogenesis 1.39% (2/144) 4.49 0.00343 0.013166
GO:0022613 ribonucleoprotein complex biogenesis 1.39% (2/144) 4.49 0.00343 0.013166
GO:0044085 cellular component biogenesis 1.39% (2/144) 4.36 0.004094 0.015466
GO:0140513 nuclear protein-containing complex 2.08% (3/144) 3.17 0.004455 0.016568
GO:0009987 cellular process 20.83% (30/144) 0.7 0.004567 0.016721
GO:0046493 lipid A metabolic process 0.69% (1/144) 6.94 0.008117 0.022998
GO:0009245 lipid A biosynthetic process 0.69% (1/144) 6.94 0.008117 0.022998
GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity 0.69% (1/144) 6.94 0.008117 0.022998
GO:0019856 pyrimidine nucleobase biosynthetic process 0.69% (1/144) 6.94 0.008117 0.022998
GO:1901269 lipooligosaccharide metabolic process 0.69% (1/144) 6.94 0.008117 0.022998
GO:1901271 lipooligosaccharide biosynthetic process 0.69% (1/144) 6.94 0.008117 0.022998
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 0.69% (1/144) 6.94 0.008117 0.022998
GO:0006206 pyrimidine nucleobase metabolic process 0.69% (1/144) 6.94 0.008117 0.022998
GO:0004590 orotidine-5'-phosphate decarboxylase activity 0.69% (1/144) 6.94 0.008117 0.022998
GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity 0.69% (1/144) 6.94 0.008117 0.022998
GO:0019136 deoxynucleoside kinase activity 0.69% (1/144) 6.94 0.008117 0.022998
GO:0005849 mRNA cleavage factor complex 0.69% (1/144) 6.94 0.008117 0.022998
GO:0006378 mRNA polyadenylation 0.69% (1/144) 6.94 0.008117 0.022998
GO:0043631 RNA polyadenylation 0.69% (1/144) 6.94 0.008117 0.022998
GO:1905354 exoribonuclease complex 0.69% (1/144) 6.94 0.008117 0.022998
GO:0019206 nucleoside kinase activity 0.69% (1/144) 6.94 0.008117 0.022998
GO:0000178 exosome (RNase complex) 0.69% (1/144) 6.94 0.008117 0.022998
GO:0019213 deacetylase activity 0.69% (1/144) 6.94 0.008117 0.022998
GO:0004797 thymidine kinase activity 0.69% (1/144) 6.94 0.008117 0.022998
GO:0001882 nucleoside binding 2.78% (4/144) 2.18 0.012006 0.031401
GO:0001883 purine nucleoside binding 2.78% (4/144) 2.18 0.012006 0.031401
GO:0005525 GTP binding 2.78% (4/144) 2.18 0.012006 0.031401
GO:0032549 ribonucleoside binding 2.78% (4/144) 2.18 0.012006 0.031401
GO:0032550 purine ribonucleoside binding 2.78% (4/144) 2.18 0.012006 0.031401
GO:0032561 guanyl ribonucleotide binding 2.78% (4/144) 2.18 0.012006 0.031401
GO:0019001 guanyl nucleotide binding 2.78% (4/144) 2.18 0.012006 0.031401
GO:1990904 ribonucleoprotein complex 1.39% (2/144) 3.49 0.013589 0.035154
GO:0019205 nucleobase-containing compound kinase activity 0.69% (1/144) 5.94 0.016168 0.038099
GO:0043527 tRNA methyltransferase complex 0.69% (1/144) 5.94 0.016168 0.038099
GO:0009435 NAD biosynthetic process 0.69% (1/144) 5.94 0.016168 0.038099
GO:0030688 preribosome, small subunit precursor 0.69% (1/144) 5.94 0.016168 0.038099
GO:0034708 methyltransferase complex 0.69% (1/144) 5.94 0.016168 0.038099
GO:0031515 tRNA (m1A) methyltransferase complex 0.69% (1/144) 5.94 0.016168 0.038099
GO:0030488 tRNA methylation 0.69% (1/144) 5.94 0.016168 0.038099
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine 0.69% (1/144) 5.94 0.016168 0.038099
GO:0140535 intracellular protein-containing complex 1.39% (2/144) 3.36 0.016065 0.041114
GO:0046983 protein dimerization activity 1.39% (2/144) 3.24 0.018719 0.043678
GO:0008150 biological_process 22.92% (33/144) 0.51 0.020091 0.046424
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_170 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_197 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_7 0.077 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_31 0.047 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_161 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_209 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_226 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_243 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_6 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_21 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_49 0.058 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_73 0.057 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_101 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_75 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_153 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_167 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_301 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_331 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_17 0.03 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_53 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_64 0.061 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_92 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_119 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_132 0.042 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_146 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_165 0.035 Archaeplastida Compare
Oryza sativa HCCA Cluster_127 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_134 0.027 Archaeplastida Compare
Oryza sativa HCCA Cluster_159 0.04 Archaeplastida Compare
Oryza sativa HCCA Cluster_175 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_210 0.028 Archaeplastida Compare
Oryza sativa HCCA Cluster_312 0.05 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_8 0.035 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_129 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_172 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_203 0.056 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_229 0.049 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_300 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_302 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_306 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_163 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_237 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_342 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_477 0.025 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_52 0.022 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_67 0.029 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_73 0.03 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_124 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_9 0.033 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_14 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_29 0.042 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.055 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_158 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_197 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_255 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_3 0.06 Archaeplastida Compare
Vitis vinifera HCCA Cluster_13 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_39 0.029 Archaeplastida Compare
Vitis vinifera HCCA Cluster_88 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_13 0.043 Archaeplastida Compare
Zea mays HCCA Cluster_14 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_55 0.033 Archaeplastida Compare
Zea mays HCCA Cluster_102 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_162 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_226 0.021 Archaeplastida Compare
Sequences (144) (download table)

InterPro Domains

GO Terms

Family Terms