Coexpression cluster: Cluster_17 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 33.97% (71/209) 1.13 0.0 0.0
GO:0003676 nucleic acid binding 13.4% (28/209) 1.91 0.0 0.0
GO:0016570 histone modification 2.39% (5/209) 5.73 0.0 1e-06
GO:0016569 covalent chromatin modification 2.39% (5/209) 5.73 0.0 1e-06
GO:0006397 mRNA processing 2.87% (6/209) 4.9 0.0 1e-06
GO:0016071 mRNA metabolic process 2.87% (6/209) 4.47 0.0 7e-06
GO:0016070 RNA metabolic process 6.7% (14/209) 2.5 0.0 8e-06
GO:0140513 nuclear protein-containing complex 3.35% (7/209) 3.86 0.0 1.4e-05
GO:1901363 heterocyclic compound binding 20.57% (43/209) 1.14 1e-06 1.4e-05
GO:0097159 organic cyclic compound binding 20.57% (43/209) 1.14 1e-06 1.4e-05
GO:0006325 chromatin organization 2.39% (5/209) 4.48 2e-06 4.9e-05
GO:0032774 RNA biosynthetic process 3.35% (7/209) 3.49 3e-06 5.7e-05
GO:0005515 protein binding 11.48% (24/209) 1.45 8e-06 0.000151
GO:0003674 molecular_function 41.15% (86/209) 0.59 1.1e-05 0.000192
GO:0090304 nucleic acid metabolic process 6.7% (14/209) 1.99 1.3e-05 0.000213
GO:0005634 nucleus 3.83% (8/209) 2.76 2.4e-05 0.000368
GO:0016593 Cdc73/Paf1 complex 0.96% (2/209) 6.41 0.000138 0.001483
GO:0071826 ribonucleoprotein complex subunit organization 0.96% (2/209) 6.41 0.000138 0.001483
GO:0006354 DNA-templated transcription, elongation 0.96% (2/209) 6.41 0.000138 0.001483
GO:0022618 ribonucleoprotein complex assembly 0.96% (2/209) 6.41 0.000138 0.001483
GO:0006368 transcription elongation from RNA polymerase II promoter 0.96% (2/209) 6.41 0.000138 0.001483
GO:0043231 intracellular membrane-bounded organelle 3.83% (8/209) 2.45 0.000111 0.001523
GO:0043227 membrane-bounded organelle 3.83% (8/209) 2.45 0.000111 0.001523
GO:0006396 RNA processing 3.35% (7/209) 2.6 0.000159 0.001638
GO:0016043 cellular component organization 3.35% (7/209) 2.59 0.00017 0.001675
GO:0071840 cellular component organization or biogenesis 3.35% (7/209) 2.42 0.000344 0.003264
GO:0008023 transcription elongation factor complex 0.96% (2/209) 5.82 0.000411 0.003761
GO:0043170 macromolecule metabolic process 14.35% (30/209) 0.92 0.000533 0.004542
GO:0006352 DNA-templated transcription, initiation 1.44% (3/209) 4.19 0.000533 0.004702
GO:0016573 histone acetylation 0.96% (2/209) 5.09 0.001349 0.011109
GO:0003723 RNA binding 3.35% (7/209) 2.02 0.001806 0.014389
GO:0018393 internal peptidyl-lysine acetylation 0.96% (2/209) 4.82 0.002008 0.01459
GO:0006475 internal protein amino acid acetylation 0.96% (2/209) 4.82 0.002008 0.01459
GO:0018394 peptidyl-lysine acetylation 0.96% (2/209) 4.82 0.002008 0.01459
GO:0006139 nucleobase-containing compound metabolic process 6.7% (14/209) 1.28 0.002107 0.014873
GO:1901360 organic cyclic compound metabolic process 7.18% (15/209) 1.22 0.002188 0.015011
GO:0043543 protein acylation 0.96% (2/209) 4.6 0.00279 0.017669
GO:0006473 protein acetylation 0.96% (2/209) 4.6 0.00279 0.017669
GO:0140535 intracellular protein-containing complex 1.44% (3/209) 3.41 0.002718 0.018142
GO:1990234 transferase complex 1.44% (3/209) 3.29 0.003431 0.020178
GO:0043229 intracellular organelle 4.31% (9/209) 1.58 0.003326 0.020536
GO:0043226 organelle 4.31% (9/209) 1.58 0.003412 0.020558
GO:0018205 peptidyl-lysine modification 0.96% (2/209) 4.41 0.003691 0.021201
GO:0006725 cellular aromatic compound metabolic process 6.7% (14/209) 1.16 0.004318 0.024238
GO:0046483 heterocycle metabolic process 6.7% (14/209) 1.15 0.004535 0.024889
GO:0016410 N-acyltransferase activity 0.96% (2/209) 4.24 0.004709 0.025284
GO:0005622 intracellular anatomical structure 4.31% (9/209) 1.47 0.005557 0.029202
GO:0036211 protein modification process 8.13% (17/209) 0.96 0.006997 0.035271
GO:0006464 cellular protein modification process 8.13% (17/209) 0.96 0.006997 0.035271
GO:0051171 regulation of nitrogen compound metabolic process 2.39% (5/209) 1.87 0.012092 0.039822
GO:0010468 regulation of gene expression 2.39% (5/209) 1.87 0.012092 0.039822
GO:0080090 regulation of primary metabolic process 2.39% (5/209) 1.87 0.012092 0.039822
GO:0019107 myristoyltransferase activity 0.48% (1/209) 6.41 0.011781 0.040414
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity 0.48% (1/209) 6.41 0.011781 0.040414
GO:0006476 protein deacetylation 0.48% (1/209) 6.41 0.011781 0.040414
GO:0098732 macromolecule deacylation 0.48% (1/209) 6.41 0.011781 0.040414
GO:0035601 protein deacylation 0.48% (1/209) 6.41 0.011781 0.040414
GO:0016575 histone deacetylation 0.48% (1/209) 6.41 0.011781 0.040414
GO:0006376 mRNA splice site selection 0.48% (1/209) 6.41 0.011781 0.040414
GO:0005685 U1 snRNP 0.48% (1/209) 6.41 0.011781 0.040414
GO:0000350 generation of catalytic spliceosome for second transesterification step 0.48% (1/209) 6.41 0.011781 0.040414
GO:0006807 nitrogen compound metabolic process 14.35% (30/209) 0.66 0.00819 0.040457
GO:0031323 regulation of cellular metabolic process 2.39% (5/209) 1.85 0.012946 0.042075
GO:0035639 purine ribonucleoside triphosphate binding 9.09% (19/209) 0.8 0.013269 0.042564
GO:2000112 regulation of cellular macromolecule biosynthetic process 2.39% (5/209) 1.91 0.010883 0.043357
GO:0031326 regulation of cellular biosynthetic process 2.39% (5/209) 1.91 0.010883 0.043357
GO:0009889 regulation of biosynthetic process 2.39% (5/209) 1.91 0.010883 0.043357
GO:0010556 regulation of macromolecule biosynthetic process 2.39% (5/209) 1.91 0.010883 0.043357
GO:0032555 purine ribonucleotide binding 9.09% (19/209) 0.8 0.013832 0.043801
GO:2001141 regulation of RNA biosynthetic process 2.39% (5/209) 1.95 0.00976 0.043831
GO:0051252 regulation of RNA metabolic process 2.39% (5/209) 1.95 0.00976 0.043831
GO:0006355 regulation of transcription, DNA-templated 2.39% (5/209) 1.95 0.00976 0.043831
GO:1903506 regulation of nucleic acid-templated transcription 2.39% (5/209) 1.95 0.00976 0.043831
GO:1901362 organic cyclic compound biosynthetic process 3.83% (8/209) 1.43 0.010183 0.044124
GO:0009059 macromolecule biosynthetic process 3.35% (7/209) 1.55 0.010414 0.04435
GO:0017076 purine nucleotide binding 9.09% (19/209) 0.79 0.014267 0.044606
GO:0019219 regulation of nucleobase-containing compound metabolic process 2.39% (5/209) 1.93 0.010125 0.044658
GO:0043412 macromolecule modification 8.13% (17/209) 0.88 0.011416 0.044756
GO:0060255 regulation of macromolecule metabolic process 2.39% (5/209) 1.79 0.015258 0.046529
GO:0032553 ribonucleotide binding 9.09% (19/209) 0.78 0.015478 0.046624
GO:0034654 nucleobase-containing compound biosynthetic process 3.35% (7/209) 1.57 0.009646 0.046718
GO:0019222 regulation of metabolic process 2.39% (5/209) 1.78 0.015752 0.046877
GO:0044238 primary metabolic process 14.83% (31/209) 0.58 0.015234 0.047036
GO:0097367 carbohydrate derivative binding 9.09% (19/209) 0.77 0.016276 0.047859
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_93 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_137 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_159 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_178 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_199 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_225 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_231 0.037 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_232 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_240 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_243 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_247 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_136 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_157 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_181 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_185 0.027 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_198 0.045 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_217 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_225 0.039 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_242 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_258 0.03 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_263 0.02 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_149 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_25 0.035 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_64 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_78 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_114 0.045 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_143 0.025 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_153 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_196 0.024 Archaeplastida Compare
Gingko biloba HCCA Cluster_129 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_143 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_167 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_186 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_216 0.046 Archaeplastida Compare
Gingko biloba HCCA Cluster_290 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_322 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_350 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_4 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_31 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_60 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_69 0.032 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_105 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_128 0.031 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_130 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_138 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_146 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_160 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_165 0.041 Archaeplastida Compare
Oryza sativa HCCA Cluster_109 0.031 Archaeplastida Compare
Oryza sativa HCCA Cluster_166 0.035 Archaeplastida Compare
Oryza sativa HCCA Cluster_172 0.046 Archaeplastida Compare
Oryza sativa HCCA Cluster_211 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_262 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_291 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_324 0.042 Archaeplastida Compare
Oryza sativa HCCA Cluster_326 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_339 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_353 0.033 Archaeplastida Compare
Oryza sativa HCCA Cluster_370 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_1 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_14 0.038 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_56 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_121 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_136 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_231 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_234 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_261 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_287 0.036 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_289 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_305 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_18 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_73 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_100 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_286 0.051 Archaeplastida Compare
Picea abies HCCA Cluster_402 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_446 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_516 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_537 0.022 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_36 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_65 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_80 0.024 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_99 0.022 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_145 0.04 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_171 0.034 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_196 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_9 0.033 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_33 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_76 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_147 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_150 0.036 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_205 0.032 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_229 0.053 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_255 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_265 0.035 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_267 0.029 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_269 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_270 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_3 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_57 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_87 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_101 0.034 Archaeplastida Compare
Vitis vinifera HCCA Cluster_107 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_132 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_145 0.05 Archaeplastida Compare
Vitis vinifera HCCA Cluster_156 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_173 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_187 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_212 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_24 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_28 0.033 Archaeplastida Compare
Zea mays HCCA Cluster_87 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_140 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_142 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_145 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_172 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_213 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_218 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_260 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_295 0.043 Archaeplastida Compare
Zea mays HCCA Cluster_344 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_345 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_368 0.02 Archaeplastida Compare
Sequences (209) (download table)

InterPro Domains

GO Terms

Family Terms