Coexpression cluster: Cluster_40 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006520 cellular amino acid metabolic process 11.88% (12/101) 4.91 0.0 0.0
GO:0006082 organic acid metabolic process 11.88% (12/101) 4.13 0.0 0.0
GO:0043436 oxoacid metabolic process 11.88% (12/101) 4.13 0.0 0.0
GO:0019752 carboxylic acid metabolic process 11.88% (12/101) 4.15 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 6.93% (7/101) 5.74 0.0 0.0
GO:0043038 amino acid activation 6.93% (7/101) 5.36 0.0 0.0
GO:0043039 tRNA aminoacylation 6.93% (7/101) 5.36 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 6.93% (7/101) 5.31 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 6.93% (7/101) 5.31 0.0 0.0
GO:0016874 ligase activity 8.91% (9/101) 4.48 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 7.92% (8/101) 4.76 0.0 0.0
GO:0006399 tRNA metabolic process 6.93% (7/101) 4.36 0.0 1e-06
GO:1901607 alpha-amino acid biosynthetic process 4.95% (5/101) 5.39 0.0 2e-06
GO:0140098 catalytic activity, acting on RNA 7.92% (8/101) 3.72 0.0 3e-06
GO:0044281 small molecule metabolic process 11.88% (12/101) 2.74 0.0 4e-06
GO:1901605 alpha-amino acid metabolic process 4.95% (5/101) 5.08 0.0 5e-06
GO:0034660 ncRNA metabolic process 6.93% (7/101) 3.94 0.0 5e-06
GO:0008652 cellular amino acid biosynthetic process 4.95% (5/101) 4.97 0.0 7e-06
GO:0009058 biosynthetic process 12.87% (13/101) 2.05 1.5e-05 0.000193
GO:0046394 carboxylic acid biosynthetic process 4.95% (5/101) 3.9 2.1e-05 0.000255
GO:0016053 organic acid biosynthetic process 4.95% (5/101) 3.9 2.1e-05 0.000255
GO:0016070 RNA metabolic process 7.92% (8/101) 2.74 2.7e-05 0.000304
GO:0009073 aromatic amino acid family biosynthetic process 2.97% (3/101) 5.58 2.9e-05 0.000313
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 1.98% (2/101) 7.46 3.2e-05 0.000337
GO:0009072 aromatic amino acid family metabolic process 2.97% (3/101) 5.23 6.2e-05 0.000628
GO:1901566 organonitrogen compound biosynthetic process 7.92% (8/101) 2.54 7.2e-05 0.000702
GO:0044283 small molecule biosynthetic process 4.95% (5/101) 3.3 0.000154 0.001436
GO:0006725 cellular aromatic compound metabolic process 10.89% (11/101) 1.79 0.000337 0.003036
GO:1901360 organic cyclic compound metabolic process 10.89% (11/101) 1.75 0.000422 0.003665
GO:0090304 nucleic acid metabolic process 7.92% (8/101) 2.15 0.000456 0.003826
GO:0034641 cellular nitrogen compound metabolic process 11.88% (12/101) 1.62 0.000533 0.004333
GO:1901576 organic substance biosynthetic process 9.9% (10/101) 1.79 0.000624 0.004913
GO:0009987 cellular process 21.78% (22/101) 1.0 0.001139 0.008699
GO:1901564 organonitrogen compound metabolic process 15.84% (16/101) 1.22 0.001238 0.009175
GO:0044249 cellular biosynthetic process 8.91% (9/101) 1.7 0.001865 0.013426
GO:0044237 cellular metabolic process 18.81% (19/101) 1.0 0.002566 0.017964
GO:0016836 hydro-lyase activity 1.98% (2/101) 4.46 0.003656 0.024898
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.98% (2/101) 4.13 0.005703 0.025664
GO:0008977 prephenate dehydrogenase (NAD+) activity 0.99% (1/101) 7.46 0.005693 0.026084
GO:0006571 tyrosine biosynthetic process 0.99% (1/101) 7.46 0.005693 0.026084
GO:0009098 leucine biosynthetic process 0.99% (1/101) 7.46 0.005693 0.026084
GO:0042256 mature ribosome assembly 0.99% (1/101) 7.46 0.005693 0.026084
GO:0004665 prephenate dehydrogenase (NADP+) activity 0.99% (1/101) 7.46 0.005693 0.026084
GO:0004664 prephenate dehydratase activity 0.99% (1/101) 7.46 0.005693 0.026084
GO:0003852 2-isopropylmalate synthase activity 0.99% (1/101) 7.46 0.005693 0.026084
GO:0009094 L-phenylalanine biosynthetic process 0.99% (1/101) 7.46 0.005693 0.026084
GO:0042255 ribosome assembly 0.99% (1/101) 7.46 0.005693 0.026084
GO:0004357 glutamate-cysteine ligase activity 0.99% (1/101) 7.46 0.005693 0.026084
GO:0004424 imidazoleglycerol-phosphate dehydratase activity 0.99% (1/101) 7.46 0.005693 0.026084
GO:0004827 proline-tRNA ligase activity 0.99% (1/101) 7.46 0.005693 0.026084
GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process 0.99% (1/101) 7.46 0.005693 0.026084
GO:0006433 prolyl-tRNA aminoacylation 0.99% (1/101) 7.46 0.005693 0.026084
GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity 0.99% (1/101) 7.46 0.005693 0.026084
GO:0006551 leucine metabolic process 0.99% (1/101) 7.46 0.005693 0.026084
GO:0008152 metabolic process 22.77% (23/101) 0.77 0.006467 0.02859
GO:0046483 heterocycle metabolic process 8.91% (9/101) 1.49 0.004699 0.030364
GO:0016835 carbon-oxygen lyase activity 1.98% (2/101) 4.29 0.004627 0.030682
GO:0006139 nucleobase-containing compound metabolic process 7.92% (8/101) 1.46 0.008845 0.038429
GO:0003697 single-stranded DNA binding 0.99% (1/101) 6.46 0.011354 0.039739
GO:0043022 ribosome binding 0.99% (1/101) 6.46 0.011354 0.039739
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly 0.99% (1/101) 6.46 0.011354 0.039739
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process 0.99% (1/101) 6.46 0.011354 0.039739
GO:0009081 branched-chain amino acid metabolic process 0.99% (1/101) 6.46 0.011354 0.039739
GO:0009082 branched-chain amino acid biosynthetic process 0.99% (1/101) 6.46 0.011354 0.039739
GO:0006558 L-phenylalanine metabolic process 0.99% (1/101) 6.46 0.011354 0.039739
GO:0070070 proton-transporting V-type ATPase complex assembly 0.99% (1/101) 6.46 0.011354 0.039739
GO:0005672 transcription factor TFIIA complex 0.99% (1/101) 6.46 0.011354 0.039739
GO:0006570 tyrosine metabolic process 0.99% (1/101) 6.46 0.011354 0.039739
GO:0031072 heat shock protein binding 0.99% (1/101) 6.46 0.011354 0.039739
GO:0008150 biological_process 27.72% (28/101) 0.63 0.009916 0.042354
GO:0034622 cellular protein-containing complex assembly 1.98% (2/101) 3.7 0.010267 0.04312
GO:0006807 nitrogen compound metabolic process 16.83% (17/101) 0.87 0.010486 0.043317
GO:0030170 pyridoxal phosphate binding 1.98% (2/101) 3.46 0.014243 0.048504
GO:0070279 vitamin B6 binding 1.98% (2/101) 3.46 0.014243 0.048504
GO:0006721 terpenoid metabolic process 0.99% (1/101) 5.87 0.016983 0.048633
GO:0071826 ribonucleoprotein complex subunit organization 0.99% (1/101) 5.87 0.016983 0.048633
GO:0042803 protein homodimerization activity 0.99% (1/101) 5.87 0.016983 0.048633
GO:0016114 terpenoid biosynthetic process 0.99% (1/101) 5.87 0.016983 0.048633
GO:0000774 adenyl-nucleotide exchange factor activity 0.99% (1/101) 5.87 0.016983 0.048633
GO:0004045 aminoacyl-tRNA hydrolase activity 0.99% (1/101) 5.87 0.016983 0.048633
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 0.99% (1/101) 5.87 0.016983 0.048633
GO:0042802 identical protein binding 0.99% (1/101) 5.87 0.016983 0.048633
GO:0022618 ribonucleoprotein complex assembly 0.99% (1/101) 5.87 0.016983 0.048633
GO:0070071 proton-transporting two-sector ATPase complex assembly 0.99% (1/101) 5.87 0.016983 0.048633
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity 0.99% (1/101) 5.87 0.016983 0.048633
GO:0006528 asparagine metabolic process 0.99% (1/101) 5.87 0.016983 0.048633
GO:0006529 asparagine biosynthetic process 0.99% (1/101) 5.87 0.016983 0.048633
GO:0071704 organic substance metabolic process 17.82% (18/101) 0.76 0.017546 0.049682
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_43 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_109 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_167 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_179 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_192 0.027 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_225 0.018 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_38 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_8 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_21 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_167 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_228 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_236 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_283 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_284 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_203 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_302 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_339 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_132 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_9 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_55 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_66 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_85 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_165 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_285 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_2 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_26 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_108 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_148 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_184 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_53 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_78 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_120 0.038 Gene family Compare
Zea mays HCCA cluster Cluster_274 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_344 0.014 Gene family Compare
Sequences (101) (download table)

InterPro Domains

GO Terms

Family Terms