Coexpression cluster: Cluster_84 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006520 cellular amino acid metabolic process 8.82% (15/170) 4.48 0.0 0.0
GO:0006082 organic acid metabolic process 9.41% (16/170) 3.8 0.0 0.0
GO:0043436 oxoacid metabolic process 9.41% (16/170) 3.8 0.0 0.0
GO:0019752 carboxylic acid metabolic process 9.41% (16/170) 3.81 0.0 0.0
GO:0043038 amino acid activation 5.88% (10/170) 5.12 0.0 0.0
GO:0043039 tRNA aminoacylation 5.88% (10/170) 5.12 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 5.88% (10/170) 5.07 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 5.88% (10/170) 5.07 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 4.71% (8/170) 5.18 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 5.88% (10/170) 4.33 0.0 0.0
GO:0016874 ligase activity 6.47% (11/170) 4.02 0.0 0.0
GO:0006399 tRNA metabolic process 5.88% (10/170) 4.12 0.0 0.0
GO:0034660 ncRNA metabolic process 5.88% (10/170) 3.71 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 6.47% (11/170) 3.42 0.0 0.0
GO:0044281 small molecule metabolic process 10.0% (17/170) 2.49 0.0 0.0
GO:0016070 RNA metabolic process 8.24% (14/170) 2.8 0.0 0.0
GO:0003674 molecular_function 45.29% (77/170) 0.71 1e-06 1.1e-05
GO:0008152 metabolic process 27.06% (46/170) 1.02 1e-06 2.7e-05
GO:0090304 nucleic acid metabolic process 8.24% (14/170) 2.2 2e-06 3.9e-05
GO:0055114 oxidation-reduction process 9.41% (16/170) 2.02 2e-06 4.1e-05
GO:0003824 catalytic activity 28.82% (49/170) 0.94 3e-06 4.7e-05
GO:0016491 oxidoreductase activity 9.41% (16/170) 1.97 4e-06 5.4e-05
GO:0008150 biological_process 32.35% (55/170) 0.85 4e-06 5.6e-05
GO:0006725 cellular aromatic compound metabolic process 10.59% (18/170) 1.75 7e-06 0.000102
GO:0046483 heterocycle metabolic process 10.59% (18/170) 1.74 8e-06 0.000103
GO:1901360 organic cyclic compound metabolic process 10.59% (18/170) 1.71 1e-05 0.000135
GO:0006139 nucleobase-containing compound metabolic process 9.41% (16/170) 1.71 3.4e-05 0.000416
GO:0034641 cellular nitrogen compound metabolic process 11.18% (19/170) 1.53 3.4e-05 0.000429
GO:0005488 binding 27.06% (46/170) 0.79 9.7e-05 0.001053
GO:1901363 heterocyclic compound binding 18.82% (32/170) 1.01 9.5e-05 0.001074
GO:0097159 organic cyclic compound binding 18.82% (32/170) 1.01 9.5e-05 0.001074
GO:0008652 cellular amino acid biosynthetic process 2.35% (4/170) 3.9 0.000139 0.001471
GO:0009987 cellular process 20.59% (35/170) 0.92 0.000158 0.001613
GO:0016053 organic acid biosynthetic process 2.94% (5/170) 3.14 0.000251 0.002424
GO:0046394 carboxylic acid biosynthetic process 2.94% (5/170) 3.14 0.000251 0.002424
GO:0008079 translation termination factor activity 1.18% (2/170) 6.12 0.000272 0.002486
GO:0003747 translation release factor activity 1.18% (2/170) 6.12 0.000272 0.002486
GO:0003723 RNA binding 4.12% (7/170) 2.31 0.000542 0.004074
GO:0044237 cellular metabolic process 17.65% (30/170) 0.91 0.000556 0.004086
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 2.35% (4/170) 3.46 0.000466 0.004144
GO:0006415 translational termination 1.18% (2/170) 5.71 0.000541 0.004155
GO:0032984 protein-containing complex disassembly 1.18% (2/170) 5.71 0.000541 0.004155
GO:0043624 cellular protein complex disassembly 1.18% (2/170) 5.71 0.000541 0.004155
GO:0022411 cellular component disassembly 1.18% (2/170) 5.71 0.000541 0.004155
GO:0008168 methyltransferase activity 3.53% (6/170) 2.58 0.000521 0.004405
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 2.35% (4/170) 3.42 0.000515 0.004466
GO:0016741 transferase activity, transferring one-carbon groups 3.53% (6/170) 2.47 0.000769 0.005527
GO:0006547 histidine metabolic process 1.18% (2/170) 5.12 0.001335 0.009025
GO:0000105 histidine biosynthetic process 1.18% (2/170) 5.12 0.001335 0.009025
GO:0052803 imidazole-containing compound metabolic process 1.18% (2/170) 5.12 0.001335 0.009025
GO:0044283 small molecule biosynthetic process 2.94% (5/170) 2.55 0.001653 0.010954
GO:0000049 tRNA binding 1.18% (2/170) 4.71 0.002461 0.015996
GO:0071704 organic substance metabolic process 17.65% (30/170) 0.75 0.003171 0.020221
GO:0044238 primary metabolic process 17.06% (29/170) 0.76 0.003375 0.021123
GO:0043167 ion binding 14.12% (24/170) 0.84 0.003769 0.023165
GO:0009073 aromatic amino acid family biosynthetic process 1.18% (2/170) 4.25 0.004743 0.028629
GO:0043168 anion binding 11.18% (19/170) 0.94 0.004975 0.029499
GO:0043933 protein-containing complex subunit organization 1.76% (3/170) 3.04 0.005702 0.033228
GO:0005737 cytoplasm 1.76% (3/170) 2.97 0.006585 0.037726
GO:0036094 small molecule binding 11.18% (19/170) 0.88 0.00738 0.041571
GO:0009072 aromatic amino acid family metabolic process 1.18% (2/170) 3.9 0.007701 0.042674
GO:0070402 NADPH binding 0.59% (1/170) 6.71 0.009582 0.044367
GO:0004312 fatty acid synthase activity 0.59% (1/170) 6.71 0.009582 0.044367
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity 0.59% (1/170) 6.71 0.009582 0.044367
GO:0004635 phosphoribosyl-AMP cyclohydrolase activity 0.59% (1/170) 6.71 0.009582 0.044367
GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor 0.59% (1/170) 6.71 0.009582 0.044367
GO:0004764 shikimate 3-dehydrogenase (NADP+) activity 0.59% (1/170) 6.71 0.009582 0.044367
GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity 0.59% (1/170) 6.71 0.009582 0.044367
GO:0003879 ATP phosphoribosyltransferase activity 0.59% (1/170) 6.71 0.009582 0.044367
GO:0004366 glycerol-3-phosphate O-acyltransferase activity 0.59% (1/170) 6.71 0.009582 0.044367
GO:0004820 glycine-tRNA ligase activity 0.59% (1/170) 6.71 0.009582 0.044367
GO:0004455 ketol-acid reductoisomerase activity 0.59% (1/170) 6.71 0.009582 0.044367
GO:0006426 glycyl-tRNA aminoacylation 0.59% (1/170) 6.71 0.009582 0.044367
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_30 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.031 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_87 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_132 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_140 0.04 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_168 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_192 0.066 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_238 0.033 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_246 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_265 0.044 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_38 0.023 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_61 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_71 0.042 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_85 0.018 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_135 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_149 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.032 Gene family Compare
Oryza sativa HCCA cluster Cluster_8 0.021 Gene family Compare
Oryza sativa HCCA cluster Cluster_21 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_82 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_147 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_153 0.026 Gene family Compare
Oryza sativa HCCA cluster Cluster_170 0.056 Gene family Compare
Oryza sativa HCCA cluster Cluster_178 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_223 0.029 Gene family Compare
Oryza sativa HCCA cluster Cluster_236 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_288 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_299 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_186 0.041 Gene family Compare
Picea abies HCCA cluster Cluster_205 0.028 Gene family Compare
Picea abies HCCA cluster Cluster_407 0.02 Gene family Compare
Picea abies HCCA cluster Cluster_476 0.021 Gene family Compare
Picea abies HCCA cluster Cluster_478 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_11 0.024 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_43 0.03 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_66 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_94 0.024 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_148 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_149 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_165 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_167 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_176 0.023 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_203 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_55 0.03 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.068 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_99 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_142 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_149 0.023 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_206 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_214 0.028 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_234 0.033 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_245 0.023 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_307 0.021 Gene family Compare
Vitis vinifera HCCA cluster Cluster_2 0.044 Gene family Compare
Vitis vinifera HCCA cluster Cluster_38 0.026 Gene family Compare
Vitis vinifera HCCA cluster Cluster_76 0.02 Gene family Compare
Vitis vinifera HCCA cluster Cluster_95 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_104 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_120 0.054 Gene family Compare
Vitis vinifera HCCA cluster Cluster_148 0.03 Gene family Compare
Vitis vinifera HCCA cluster Cluster_198 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_53 0.023 Gene family Compare
Zea mays HCCA cluster Cluster_69 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_100 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.044 Gene family Compare
Zea mays HCCA cluster Cluster_120 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_163 0.026 Gene family Compare
Zea mays HCCA cluster Cluster_233 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_243 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_246 0.048 Gene family Compare
Zea mays HCCA cluster Cluster_258 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_297 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_321 0.016 Gene family Compare
Sequences (170) (download table)

InterPro Domains

GO Terms

Family Terms