Coexpression cluster: Cluster_4 (HCCA cluster)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0017144 drug metabolic process 7.14% (5/70) 4.47 3e-06 0.000839
GO:0009141 nucleoside triphosphate metabolic process 5.71% (4/70) 5.03 6e-06 0.000916
GO:0006771 riboflavin metabolic process 2.86% (2/70) 6.18 0.000318 0.003929
GO:0042727 flavin-containing compound biosynthetic process 2.86% (2/70) 6.18 0.000318 0.003929
GO:0042726 flavin-containing compound metabolic process 2.86% (2/70) 6.18 0.000318 0.003929
GO:0009231 riboflavin biosynthetic process 2.86% (2/70) 6.18 0.000318 0.003929
GO:0009123 nucleoside monophosphate metabolic process 4.29% (3/70) 4.57 0.000269 0.004018
GO:0009167 purine ribonucleoside monophosphate metabolic process 4.29% (3/70) 4.57 0.000269 0.004018
GO:0009161 ribonucleoside monophosphate metabolic process 4.29% (3/70) 4.57 0.000269 0.004018
GO:0009126 purine nucleoside monophosphate metabolic process 4.29% (3/70) 4.57 0.000269 0.004018
GO:1901566 organonitrogen compound biosynthetic process 8.57% (6/70) 2.65 0.000383 0.004028
GO:0046390 ribose phosphate biosynthetic process 4.29% (3/70) 4.4 0.000383 0.004179
GO:0009260 ribonucleotide biosynthetic process 4.29% (3/70) 4.4 0.000383 0.004179
GO:0009152 purine ribonucleotide biosynthetic process 4.29% (3/70) 4.4 0.000383 0.004179
GO:0044283 small molecule biosynthetic process 5.71% (4/70) 3.51 0.000421 0.004275
GO:0006164 purine nucleotide biosynthetic process 4.29% (3/70) 4.32 0.000449 0.004402
GO:0009124 nucleoside monophosphate biosynthetic process 4.29% (3/70) 4.62 0.000244 0.004625
GO:0009127 purine nucleoside monophosphate biosynthetic process 4.29% (3/70) 4.62 0.000244 0.004625
GO:0009156 ribonucleoside monophosphate biosynthetic process 4.29% (3/70) 4.62 0.000244 0.004625
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 4.29% (3/70) 4.62 0.000244 0.004625
GO:0009199 ribonucleoside triphosphate metabolic process 4.29% (3/70) 4.76 0.00018 0.004636
GO:0009205 purine ribonucleoside triphosphate metabolic process 4.29% (3/70) 4.76 0.00018 0.004636
GO:0009144 purine nucleoside triphosphate metabolic process 4.29% (3/70) 4.76 0.00018 0.004636
GO:0015985 energy coupled proton transport, down electrochemical gradient 2.86% (2/70) 5.82 0.000543 0.00467
GO:0015986 ATP synthesis coupled proton transport 2.86% (2/70) 5.82 0.000543 0.00467
GO:0072522 purine-containing compound biosynthetic process 4.29% (3/70) 4.21 0.000563 0.004704
GO:0018130 heterocycle biosynthetic process 8.57% (6/70) 2.53 0.000606 0.004783
GO:0009150 purine ribonucleotide metabolic process 4.29% (3/70) 4.25 0.000523 0.004796
GO:0009259 ribonucleotide metabolic process 4.29% (3/70) 4.25 0.000523 0.004796
GO:0006163 purine nucleotide metabolic process 4.29% (3/70) 4.18 0.000605 0.004908
GO:0019693 ribose phosphate metabolic process 4.29% (3/70) 4.14 0.000648 0.004976
GO:1901362 organic cyclic compound biosynthetic process 8.57% (6/70) 2.47 0.000751 0.005465
GO:0072521 purine-containing compound metabolic process 4.29% (3/70) 4.08 0.000741 0.00554
GO:0044271 cellular nitrogen compound biosynthetic process 10.0% (7/70) 2.21 0.000783 0.005556
GO:0046034 ATP metabolic process 4.29% (3/70) 4.82 0.000161 0.005707
GO:0009145 purine nucleoside triphosphate biosynthetic process 4.29% (3/70) 4.87 0.000143 0.005814
GO:0009201 ribonucleoside triphosphate biosynthetic process 4.29% (3/70) 4.87 0.000143 0.005814
GO:0006754 ATP biosynthetic process 4.29% (3/70) 4.87 0.000143 0.005814
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 4.29% (3/70) 4.87 0.000143 0.005814
GO:0009142 nucleoside triphosphate biosynthetic process 4.29% (3/70) 4.87 0.000143 0.005814
GO:1901137 carbohydrate derivative biosynthetic process 4.29% (3/70) 3.96 0.000952 0.006592
GO:0045454 cell redox homeostasis 4.29% (3/70) 3.93 0.00101 0.006827
GO:0019725 cellular homeostasis 4.29% (3/70) 3.87 0.001132 0.007476
GO:0044281 small molecule metabolic process 8.57% (6/70) 2.27 0.001534 0.009901
GO:0042592 homeostatic process 4.29% (3/70) 3.69 0.001633 0.010304
GO:0042364 water-soluble vitamin biosynthetic process 2.86% (2/70) 4.99 0.001777 0.010737
GO:0009110 vitamin biosynthetic process 2.86% (2/70) 4.99 0.001777 0.010737
GO:0006767 water-soluble vitamin metabolic process 2.86% (2/70) 4.9 0.002009 0.011642
GO:0006766 vitamin metabolic process 2.86% (2/70) 4.9 0.002009 0.011642
GO:0065008 regulation of biological quality 4.29% (3/70) 3.5 0.002352 0.013361
GO:1901135 carbohydrate derivative metabolic process 4.29% (3/70) 3.36 0.003121 0.016724
GO:0009987 cellular process 22.86% (16/70) 1.07 0.00308 0.01682
GO:0044249 cellular biosynthetic process 10.0% (7/70) 1.86 0.00307 0.017094
GO:1902600 proton transmembrane transport 2.86% (2/70) 4.46 0.00368 0.018664
GO:1901292 nucleoside phosphate catabolic process 2.86% (2/70) 4.46 0.00368 0.018664
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 2.86% (2/70) 4.46 0.00368 0.018664
GO:0009349 riboflavin synthase complex 1.43% (1/70) 7.99 0.003946 0.018676
GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity 1.43% (1/70) 7.99 0.003946 0.018676
GO:0003919 FMN adenylyltransferase activity 1.43% (1/70) 7.99 0.003946 0.018676
GO:1901576 organic substance biosynthetic process 10.0% (7/70) 1.81 0.003787 0.018871
GO:0006753 nucleoside phosphate metabolic process 5.71% (4/70) 2.59 0.004378 0.019736
GO:0008150 biological_process 31.43% (22/70) 0.81 0.004368 0.02001
GO:0034404 nucleobase-containing small molecule biosynthetic process 2.86% (2/70) 4.34 0.004342 0.020214
GO:0046434 organophosphate catabolic process 2.86% (2/70) 4.29 0.004692 0.020819
GO:0034622 cellular protein-containing complex assembly 2.86% (2/70) 4.23 0.005054 0.022082
GO:0015078 proton transmembrane transporter activity 2.86% (2/70) 4.18 0.005429 0.023361
GO:0098796 membrane protein complex 4.29% (3/70) 3.06 0.005577 0.02364
GO:0044270 cellular nitrogen compound catabolic process 2.86% (2/70) 4.08 0.006216 0.024182
GO:0046700 heterocycle catabolic process 2.86% (2/70) 4.08 0.006216 0.024182
GO:0009055 electron transfer activity 2.86% (2/70) 4.08 0.006216 0.024182
GO:0034655 nucleobase-containing compound catabolic process 2.86% (2/70) 4.08 0.006216 0.024182
GO:0055086 nucleobase-containing small molecule metabolic process 5.71% (4/70) 2.48 0.005803 0.024237
GO:0009058 biosynthetic process 10.0% (7/70) 1.69 0.005938 0.024439
GO:0016491 oxidoreductase activity 8.57% (6/70) 1.84 0.006651 0.024531
GO:0044436 thylakoid part 2.86% (2/70) 4.03 0.006628 0.024767
GO:1901361 organic cyclic compound catabolic process 2.86% (2/70) 4.03 0.006628 0.024767
GO:0019439 aromatic compound catabolic process 2.86% (2/70) 4.03 0.006628 0.024767
GO:0098660 inorganic ion transmembrane transport 2.86% (2/70) 3.9 0.007935 0.026514
GO:0098662 inorganic cation transmembrane transport 2.86% (2/70) 3.9 0.007935 0.026514
GO:0098655 cation transmembrane transport 2.86% (2/70) 3.9 0.007935 0.026514
GO:0065003 protein-containing complex assembly 2.86% (2/70) 3.94 0.007488 0.026918
GO:0015077 monovalent inorganic cation transmembrane transporter activity 2.86% (2/70) 3.94 0.007488 0.026918
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 1.43% (1/70) 6.99 0.007876 0.027278
GO:0009512 cytochrome b6f complex 1.43% (1/70) 6.99 0.007876 0.027278
GO:0017004 cytochrome complex assembly 1.43% (1/70) 6.99 0.007876 0.027278
GO:0019637 organophosphate metabolic process 5.71% (4/70) 2.31 0.008765 0.028945
GO:0015672 monovalent inorganic cation transport 2.86% (2/70) 3.78 0.009349 0.030173
GO:0008152 metabolic process 24.29% (17/70) 0.86 0.009303 0.030368
GO:0034220 ion transmembrane transport 2.86% (2/70) 3.74 0.009844 0.031062
GO:0043933 protein-containing complex subunit organization 2.86% (2/70) 3.74 0.009844 0.031062
GO:0034654 nucleobase-containing compound biosynthetic process 5.71% (4/70) 2.22 0.010642 0.033213
GO:0005737 cytoplasm 2.86% (2/70) 3.66 0.010867 0.033545
GO:0004683 calmodulin-dependent protein kinase activity 1.43% (1/70) 6.4 0.011791 0.035249
GO:0009143 nucleoside triphosphate catabolic process 1.43% (1/70) 6.4 0.011791 0.035249
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 1.43% (1/70) 6.4 0.011791 0.035249
GO:0022607 cellular component assembly 2.86% (2/70) 3.49 0.013619 0.04029
GO:0044464 cell part 10.0% (7/70) 1.45 0.013767 0.040307
GO:0070566 adenylyltransferase activity 1.43% (1/70) 5.99 0.015691 0.043688
GO:0070069 cytochrome complex 1.43% (1/70) 5.99 0.015691 0.043688
GO:0004427 inorganic diphosphatase activity 1.43% (1/70) 5.99 0.015691 0.043688
GO:0033743 peptide-methionine (R)-S-oxide reductase activity 1.43% (1/70) 5.99 0.015691 0.043688
GO:0004332 fructose-bisphosphate aldolase activity 1.43% (1/70) 5.99 0.015691 0.043688
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_30 0.028 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_164 0.08 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_238 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_265 0.03 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_53 0.062 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_56 0.014 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_110 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_122 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_149 0.022 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_159 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_21 0.026 Gene family Compare
Oryza sativa HCCA cluster Cluster_126 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_147 0.044 Gene family Compare
Oryza sativa HCCA cluster Cluster_153 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_223 0.036 Gene family Compare
Oryza sativa HCCA cluster Cluster_236 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_302 0.025 Gene family Compare
Picea abies HCCA cluster Cluster_65 0.083 Gene family Compare
Picea abies HCCA cluster Cluster_186 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_476 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_478 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_11 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_34 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_151 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_167 0.025 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_203 0.043 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_48 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_55 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.029 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_145 0.026 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_149 0.049 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_214 0.07 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_255 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_55 0.021 Gene family Compare
Vitis vinifera HCCA cluster Cluster_95 0.038 Gene family Compare
Vitis vinifera HCCA cluster Cluster_120 0.028 Gene family Compare
Vitis vinifera HCCA cluster Cluster_180 0.036 Gene family Compare
Vitis vinifera HCCA cluster Cluster_212 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_69 0.071 Gene family Compare
Zea mays HCCA cluster Cluster_75 0.025 Gene family Compare
Zea mays HCCA cluster Cluster_163 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_246 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_254 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_269 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_313 0.018 Gene family Compare
Sequences (70) (download table)

InterPro Domains

GO Terms

Family Terms