Coexpression cluster: Cluster_129 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016071 mRNA metabolic process 2.55% (5/196) 4.3 4e-06 0.001271
GO:0005515 protein binding 10.71% (21/196) 1.35 8e-05 0.011414
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 1.02% (2/196) 5.92 0.000362 0.025678
GO:0000398 mRNA splicing, via spliceosome 1.02% (2/196) 5.18 0.001188 0.025954
GO:0010629 negative regulation of gene expression 1.02% (2/196) 5.18 0.001188 0.025954
GO:0006402 mRNA catabolic process 1.02% (2/196) 5.18 0.001188 0.025954
GO:0000375 RNA splicing, via transesterification reactions 1.02% (2/196) 5.18 0.001188 0.025954
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 1.02% (2/196) 5.18 0.001188 0.025954
GO:0000956 nuclear-transcribed mRNA catabolic process 1.02% (2/196) 5.18 0.001188 0.025954
GO:0016070 RNA metabolic process 4.59% (9/196) 1.96 0.000558 0.026402
GO:0090304 nucleic acid metabolic process 5.61% (11/196) 1.74 0.000508 0.028874
GO:0003712 transcription coregulator activity 1.53% (3/196) 4.38 0.00035 0.033135
GO:0005634 nucleus 3.06% (6/196) 2.44 0.000849 0.034445
GO:0006401 RNA catabolic process 1.02% (2/196) 4.92 0.001769 0.035888
GO:0043231 intracellular membrane-bounded organelle 3.06% (6/196) 2.13 0.002559 0.045416
GO:0043227 membrane-bounded organelle 3.06% (6/196) 2.13 0.002559 0.045416
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_159 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_189 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_231 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_258 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_120 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_150 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_198 0.03 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_209 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_163 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_195 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_129 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_216 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_60 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_69 0.027 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_138 0.027 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_146 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_166 0.028 Archaeplastida Compare
Oryza sativa HCCA Cluster_172 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_324 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_14 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_56 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_121 0.035 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_293 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_206 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_99 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_171 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_9 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_33 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_205 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_229 0.043 Archaeplastida Compare
Vitis vinifera HCCA Cluster_101 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_113 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_145 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_169 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_28 0.035 Archaeplastida Compare
Zea mays HCCA Cluster_218 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_295 0.021 Archaeplastida Compare
Sequences (196) (download table)

InterPro Domains

GO Terms

Family Terms