Coexpression cluster: Cluster_10 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016072 rRNA metabolic process 5.39% (9/167) 5.65 0.0 0.0
GO:0006364 rRNA processing 5.39% (9/167) 5.65 0.0 0.0
GO:0016070 RNA metabolic process 11.38% (19/167) 3.26 0.0 0.0
GO:0003676 nucleic acid binding 17.37% (29/167) 2.29 0.0 0.0
GO:0034470 ncRNA processing 5.99% (10/167) 4.41 0.0 0.0
GO:0090304 nucleic acid metabolic process 11.38% (19/167) 2.67 0.0 0.0
GO:0006396 RNA processing 6.59% (11/167) 3.58 0.0 0.0
GO:0034660 ncRNA metabolic process 5.99% (10/167) 3.73 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 12.57% (21/167) 2.12 0.0 0.0
GO:0097659 nucleic acid-templated transcription 4.19% (7/167) 4.41 0.0 1e-06
GO:0006351 transcription, DNA-templated 4.19% (7/167) 4.41 0.0 1e-06
GO:0042254 ribosome biogenesis 2.99% (5/167) 5.59 0.0 1e-06
GO:0022613 ribonucleoprotein complex biogenesis 2.99% (5/167) 5.59 0.0 1e-06
GO:0044085 cellular component biogenesis 2.99% (5/167) 5.47 0.0 1e-06
GO:0046483 heterocycle metabolic process 12.57% (21/167) 1.99 0.0 1e-06
GO:0006725 cellular aromatic compound metabolic process 12.57% (21/167) 2.0 0.0 1e-06
GO:0030684 preribosome 2.4% (4/167) 6.15 0.0 1e-06
GO:1901360 organic cyclic compound metabolic process 12.57% (21/167) 1.96 0.0 1e-06
GO:0005488 binding 31.74% (53/167) 1.02 0.0 2e-06
GO:0032774 RNA biosynthetic process 4.19% (7/167) 3.81 1e-06 7e-06
GO:0034641 cellular nitrogen compound metabolic process 12.57% (21/167) 1.7 2e-06 2.1e-05
GO:0032040 small-subunit processome 1.8% (3/167) 6.32 3e-06 3.2e-05
GO:0005634 nucleus 4.79% (8/167) 3.09 5e-06 4.3e-05
GO:0005730 nucleolus 1.8% (3/167) 5.99 8e-06 7.2e-05
GO:0097159 organic cyclic compound binding 20.36% (34/167) 1.12 1.1e-05 8.9e-05
GO:1901363 heterocyclic compound binding 20.36% (34/167) 1.12 1.1e-05 8.9e-05
GO:0043227 membrane-bounded organelle 4.79% (8/167) 2.78 2.3e-05 0.000175
GO:0043231 intracellular membrane-bounded organelle 4.79% (8/167) 2.78 2.3e-05 0.000175
GO:0043229 intracellular organelle 6.59% (11/167) 2.2 3.1e-05 0.000227
GO:0043226 organelle 6.59% (11/167) 2.19 3.2e-05 0.000227
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.4% (4/167) 4.27 4.9e-05 0.000337
GO:0034062 5'-3' RNA polymerase activity 2.4% (4/167) 4.21 5.8e-05 0.00038
GO:0097747 RNA polymerase activity 2.4% (4/167) 4.21 5.8e-05 0.00038
GO:0044428 nuclear part 2.99% (5/167) 3.5 7.8e-05 0.00049
GO:0016779 nucleotidyltransferase activity 2.99% (5/167) 3.15 0.00025 0.001537
GO:0034654 nucleobase-containing compound biosynthetic process 4.79% (8/167) 1.97 0.001058 0.006318
GO:0044464 cell part 8.98% (15/167) 1.3 0.001218 0.007075
GO:0034645 cellular macromolecule biosynthetic process 4.19% (7/167) 2.01 0.001868 0.010569
GO:0005515 protein binding 9.58% (16/167) 1.16 0.002221 0.012243
GO:0003723 RNA binding 3.59% (6/167) 2.12 0.002698 0.0145
GO:0032549 ribonucleoside binding 2.99% (5/167) 2.28 0.003702 0.015606
GO:0005525 GTP binding 2.99% (5/167) 2.28 0.003702 0.015606
GO:0032561 guanyl ribonucleotide binding 2.99% (5/167) 2.28 0.003702 0.015606
GO:0032550 purine ribonucleoside binding 2.99% (5/167) 2.28 0.003702 0.015606
GO:0019001 guanyl nucleotide binding 2.99% (5/167) 2.28 0.003702 0.015606
GO:0001882 nucleoside binding 2.99% (5/167) 2.28 0.003702 0.015606
GO:0001883 purine nucleoside binding 2.99% (5/167) 2.28 0.003702 0.015606
GO:0008168 methyltransferase activity 2.99% (5/167) 2.34 0.003153 0.015764
GO:0019438 aromatic compound biosynthetic process 4.79% (8/167) 1.73 0.00305 0.015995
GO:0009059 macromolecule biosynthetic process 4.19% (7/167) 1.87 0.003143 0.016087
GO:0071840 cellular component organization or biogenesis 2.99% (5/167) 2.26 0.004001 0.016542
GO:0016741 transferase activity, transferring one-carbon groups 2.99% (5/167) 2.23 0.004317 0.01751
GO:0018130 heterocycle biosynthetic process 4.79% (8/167) 1.69 0.00359 0.017542
GO:1901362 organic cyclic compound biosynthetic process 4.79% (8/167) 1.63 0.004585 0.017922
GO:0003674 molecular_function 37.13% (62/167) 0.43 0.004523 0.01801
GO:0044424 intracellular part 7.78% (13/167) 1.18 0.005223 0.020053
GO:0035639 purine ribonucleoside triphosphate binding 10.18% (17/167) 0.97 0.006421 0.02422
GO:0032555 purine ribonucleotide binding 10.18% (17/167) 0.96 0.006693 0.024811
GO:0017076 purine nucleotide binding 10.18% (17/167) 0.95 0.006903 0.025157
GO:0032553 ribonucleotide binding 10.18% (17/167) 0.94 0.00749 0.026841
GO:0097367 carbohydrate derivative binding 10.18% (17/167) 0.93 0.007877 0.027765
GO:0008193 tRNA guanylyltransferase activity 0.6% (1/167) 6.73 0.009413 0.030207
GO:0044452 nucleolar part 0.6% (1/167) 6.73 0.009413 0.030207
GO:0034457 Mpp10 complex 0.6% (1/167) 6.73 0.009413 0.030207
GO:0005732 small nucleolar ribonucleoprotein complex 0.6% (1/167) 6.73 0.009413 0.030207
GO:0009262 deoxyribonucleotide metabolic process 0.6% (1/167) 6.73 0.009413 0.030207
GO:0009264 deoxyribonucleotide catabolic process 0.6% (1/167) 6.73 0.009413 0.030207
GO:1990904 ribonucleoprotein complex 2.99% (5/167) 1.95 0.009604 0.030367
GO:0005575 cellular_component 11.98% (20/167) 0.78 0.012888 0.040157
GO:0051540 metal cluster binding 1.8% (3/167) 2.56 0.014306 0.043322
GO:0051536 iron-sulfur cluster binding 1.8% (3/167) 2.56 0.014306 0.043322
GO:0030688 preribosome, small subunit precursor 0.6% (1/167) 5.73 0.018738 0.045781
GO:0008253 5'-nucleotidase activity 0.6% (1/167) 5.73 0.018738 0.045781
GO:0008252 nucleotidase activity 0.6% (1/167) 5.73 0.018738 0.045781
GO:0070568 guanylyltransferase activity 0.6% (1/167) 5.73 0.018738 0.045781
GO:0008192 RNA guanylyltransferase activity 0.6% (1/167) 5.73 0.018738 0.045781
GO:0030515 snoRNA binding 0.6% (1/167) 5.73 0.018738 0.045781
GO:0030490 maturation of SSU-rRNA 0.6% (1/167) 5.73 0.018738 0.045781
GO:0000428 DNA-directed RNA polymerase complex 0.6% (1/167) 5.73 0.018738 0.045781
GO:0055029 nuclear DNA-directed RNA polymerase complex 0.6% (1/167) 5.73 0.018738 0.045781
GO:0005666 RNA polymerase III complex 0.6% (1/167) 5.73 0.018738 0.045781
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.6% (1/167) 5.73 0.018738 0.045781
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine 0.6% (1/167) 5.73 0.018738 0.045781
GO:0043170 macromolecule metabolic process 12.57% (21/167) 0.73 0.015485 0.04624
GO:1901265 nucleoside phosphate binding 10.18% (17/167) 0.82 0.016432 0.047742
GO:0000166 nucleotide binding 10.18% (17/167) 0.82 0.016432 0.047742
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_21 0.022 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_28 0.022 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_48 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_51 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_61 0.176 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_143 0.064 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_176 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_182 0.033 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_189 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_214 0.023 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_257 0.014 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_45 0.158 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_95 0.036 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_100 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_129 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.027 Gene family Compare
Oryza sativa HCCA cluster Cluster_28 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_34 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_67 0.161 Gene family Compare
Oryza sativa HCCA cluster Cluster_81 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_119 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_182 0.036 Gene family Compare
Oryza sativa HCCA cluster Cluster_183 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_284 0.037 Gene family Compare
Oryza sativa HCCA cluster Cluster_306 0.025 Gene family Compare
Oryza sativa HCCA cluster Cluster_311 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_335 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_64 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_68 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_73 0.02 Gene family Compare
Picea abies HCCA cluster Cluster_248 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_258 0.026 Gene family Compare
Picea abies HCCA cluster Cluster_334 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_339 0.032 Gene family Compare
Picea abies HCCA cluster Cluster_432 0.028 Gene family Compare
Picea abies HCCA cluster Cluster_463 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_10 0.023 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_41 0.026 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_55 0.036 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_66 0.061 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_102 0.023 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_138 0.042 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_148 0.028 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_165 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_14 0.09 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_16 0.02 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_121 0.094 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_165 0.039 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_211 0.025 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_234 0.026 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_245 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_254 0.04 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_272 0.027 Gene family Compare
Vitis vinifera HCCA cluster Cluster_39 0.079 Gene family Compare
Vitis vinifera HCCA cluster Cluster_47 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_82 0.029 Gene family Compare
Vitis vinifera HCCA cluster Cluster_85 0.119 Gene family Compare
Vitis vinifera HCCA cluster Cluster_149 0.032 Gene family Compare
Zea mays HCCA cluster Cluster_43 0.03 Gene family Compare
Zea mays HCCA cluster Cluster_120 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_148 0.04 Gene family Compare
Zea mays HCCA cluster Cluster_172 0.042 Gene family Compare
Zea mays HCCA cluster Cluster_173 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_191 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_221 0.039 Gene family Compare
Zea mays HCCA cluster Cluster_294 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_297 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_307 0.07 Gene family Compare
Zea mays HCCA cluster Cluster_331 0.076 Gene family Compare
Zea mays HCCA cluster Cluster_346 0.034 Gene family Compare
Zea mays HCCA cluster Cluster_352 0.019 Gene family Compare
Sequences (167) (download table)

InterPro Domains

GO Terms

Family Terms