Coexpression cluster: Cluster_12 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006811 ion transport 9.24% (11/119) 3.4 0.0 1e-06
GO:0015075 ion transmembrane transporter activity 9.24% (11/119) 3.55 0.0 1e-06
GO:0008150 biological_process 33.61% (40/119) 1.37 0.0 1e-06
GO:0015703 chromate transport 2.52% (3/119) 7.7 0.0 5e-06
GO:0015109 chromate transmembrane transporter activity 2.52% (3/119) 7.7 0.0 5e-06
GO:0005215 transporter activity 9.24% (11/119) 3.0 0.0 5e-06
GO:0022857 transmembrane transporter activity 9.24% (11/119) 3.07 0.0 5e-06
GO:0008324 cation transmembrane transporter activity 5.88% (7/119) 4.05 0.0 7e-06
GO:0051234 establishment of localization 10.92% (13/119) 2.55 0.0 9e-06
GO:0051179 localization 10.92% (13/119) 2.53 0.0 1e-05
GO:0006810 transport 10.92% (13/119) 2.55 0.0 1e-05
GO:1901605 alpha-amino acid metabolic process 4.2% (5/119) 4.93 1e-06 1.2e-05
GO:0003674 molecular_function 41.18% (49/119) 0.96 1e-06 1.2e-05
GO:0019344 cysteine biosynthetic process 2.52% (3/119) 6.96 1e-06 1.2e-05
GO:0016413 O-acetyltransferase activity 2.52% (3/119) 6.96 1e-06 1.2e-05
GO:0016412 serine O-acyltransferase activity 2.52% (3/119) 6.96 1e-06 1.2e-05
GO:0009070 serine family amino acid biosynthetic process 2.52% (3/119) 6.96 1e-06 1.2e-05
GO:0006535 cysteine biosynthetic process from serine 2.52% (3/119) 6.96 1e-06 1.2e-05
GO:0006534 cysteine metabolic process 2.52% (3/119) 6.96 1e-06 1.2e-05
GO:0009001 serine O-acetyltransferase activity 2.52% (3/119) 6.96 1e-06 1.2e-05
GO:0006563 L-serine metabolic process 2.52% (3/119) 6.96 1e-06 1.2e-05
GO:0006812 cation transport 5.88% (7/119) 3.8 1e-06 1.3e-05
GO:0015103 inorganic anion transmembrane transporter activity 3.36% (4/119) 5.53 1e-06 1.6e-05
GO:0000097 sulfur amino acid biosynthetic process 2.52% (3/119) 6.7 2e-06 2.2e-05
GO:0009069 serine family amino acid metabolic process 2.52% (3/119) 6.7 2e-06 2.2e-05
GO:0030001 metal ion transport 4.2% (5/119) 4.4 4e-06 3.7e-05
GO:0000096 sulfur amino acid metabolic process 2.52% (3/119) 6.28 6e-06 5.6e-05
GO:0015698 inorganic anion transport 3.36% (4/119) 5.0 7e-06 6.3e-05
GO:0016407 acetyltransferase activity 2.52% (3/119) 6.11 9e-06 7.8e-05
GO:0008509 anion transmembrane transporter activity 3.36% (4/119) 4.89 1e-05 7.8e-05
GO:1901607 alpha-amino acid biosynthetic process 3.36% (4/119) 4.89 1e-05 7.8e-05
GO:0006820 anion transport 3.36% (4/119) 4.7 1.7e-05 0.000131
GO:0015318 inorganic molecular entity transmembrane transporter activity 5.88% (7/119) 3.09 2e-05 0.00015
GO:0008652 cellular amino acid biosynthetic process 3.36% (4/119) 4.57 2.4e-05 0.000177
GO:0006813 potassium ion transport 2.52% (3/119) 5.58 3e-05 0.000211
GO:0008374 O-acyltransferase activity 2.52% (3/119) 5.58 3e-05 0.000211
GO:1901564 organonitrogen compound metabolic process 12.61% (15/119) 1.75 3.8e-05 0.00026
GO:0044272 sulfur compound biosynthetic process 2.52% (3/119) 5.28 5.8e-05 0.000387
GO:0006520 cellular amino acid metabolic process 4.2% (5/119) 3.48 8.8e-05 0.000571
GO:0008152 metabolic process 19.33% (23/119) 1.2 0.00013 0.000819
GO:0006790 sulfur compound metabolic process 2.52% (3/119) 4.64 0.000232 0.001392
GO:0009064 glutamine family amino acid metabolic process 1.68% (2/119) 6.38 0.000228 0.001401
GO:0016053 organic acid biosynthetic process 3.36% (4/119) 3.7 0.00026 0.001491
GO:0046394 carboxylic acid biosynthetic process 3.36% (4/119) 3.7 0.00026 0.001491
GO:0016746 transferase activity, transferring acyl groups 3.36% (4/119) 3.68 0.000276 0.001547
GO:0019752 carboxylic acid metabolic process 4.2% (5/119) 3.0 0.000423 0.002315
GO:0043436 oxoacid metabolic process 4.2% (5/119) 2.96 0.000469 0.002515
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups 2.52% (3/119) 4.28 0.000488 0.002563
GO:0006082 organic acid metabolic process 4.2% (5/119) 2.94 0.000502 0.002582
GO:0070011 peptidase activity, acting on L-amino acid peptides 5.04% (6/119) 2.52 0.000652 0.003288
GO:0015672 monovalent inorganic cation transport 2.52% (3/119) 4.11 0.000693 0.003359
GO:0006807 nitrogen compound metabolic process 14.29% (17/119) 1.26 0.000713 0.003388
GO:0003824 catalytic activity 20.17% (24/119) 1.01 0.000686 0.003391
GO:0008233 peptidase activity 5.04% (6/119) 2.44 0.000883 0.004121
GO:0044283 small molecule biosynthetic process 3.36% (4/119) 3.13 0.001163 0.005233
GO:0044281 small molecule metabolic process 5.88% (7/119) 2.13 0.001153 0.005281
GO:0051260 protein homooligomerization 1.68% (2/119) 5.24 0.00123 0.005439
GO:0051259 protein complex oligomerization 1.68% (2/119) 5.11 0.001472 0.006394
GO:0005737 cytoplasm 2.52% (3/119) 3.7 0.00161 0.006876
GO:0055085 transmembrane transport 5.04% (6/119) 2.19 0.002112 0.008871
GO:0008234 cysteine-type peptidase activity 2.52% (3/119) 3.35 0.003201 0.013224
GO:0022890 inorganic cation transmembrane transporter activity 2.52% (3/119) 3.24 0.004 0.016257
GO:0004359 glutaminase activity 0.84% (1/119) 7.7 0.004817 0.017343
GO:0006541 glutamine metabolic process 0.84% (1/119) 7.7 0.004817 0.017343
GO:0004055 argininosuccinate synthase activity 0.84% (1/119) 7.7 0.004817 0.017343
GO:0019400 alditol metabolic process 0.84% (1/119) 7.7 0.004817 0.017343
GO:0006071 glycerol metabolic process 0.84% (1/119) 7.7 0.004817 0.017343
GO:0004371 glycerone kinase activity 0.84% (1/119) 7.7 0.004817 0.017343
GO:0044238 primary metabolic process 13.45% (16/119) 1.05 0.004381 0.017524
GO:0006508 proteolysis 4.2% (5/119) 2.21 0.004729 0.018618
GO:0071704 organic substance metabolic process 13.45% (16/119) 0.99 0.006486 0.023023
GO:0019538 protein metabolic process 7.56% (9/119) 1.41 0.006953 0.024336
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.68% (2/119) 3.94 0.007466 0.025774
GO:0016211 ammonia ligase activity 0.84% (1/119) 6.7 0.009612 0.030277
GO:0006526 arginine biosynthetic process 0.84% (1/119) 6.7 0.009612 0.030277
GO:0016880 acid-ammonia (or amide) ligase activity 0.84% (1/119) 6.7 0.009612 0.030277
GO:0004356 glutamate-ammonia ligase activity 0.84% (1/119) 6.7 0.009612 0.030277
GO:0006525 arginine metabolic process 0.84% (1/119) 6.7 0.009612 0.030277
GO:0016787 hydrolase activity 8.4% (10/119) 1.25 0.009782 0.030433
GO:0070279 vitamin B6 binding 1.68% (2/119) 3.79 0.009166 0.030799
GO:0030170 pyridoxal phosphate binding 1.68% (2/119) 3.79 0.009166 0.030799
GO:0036094 small molecule binding 9.24% (11/119) 1.16 0.010445 0.0321
GO:0008237 metallopeptidase activity 1.68% (2/119) 3.61 0.011675 0.035446
GO:0065003 protein-containing complex assembly 1.68% (2/119) 3.45 0.014448 0.039575
GO:0043167 ion binding 10.92% (13/119) 0.98 0.014397 0.039868
GO:0034035 purine ribonucleoside bisphosphate metabolic process 0.84% (1/119) 6.11 0.014383 0.040273
GO:0015969 guanosine tetraphosphate metabolic process 0.84% (1/119) 6.11 0.014383 0.040273
GO:0008144 drug binding 7.56% (9/119) 1.25 0.013754 0.040775
GO:0140096 catalytic activity, acting on a protein 6.72% (8/119) 1.34 0.014297 0.04094
GO:0019842 vitamin binding 1.68% (2/119) 3.41 0.015182 0.041137
GO:0046873 metal ion transmembrane transporter activity 1.68% (2/119) 3.49 0.01373 0.041191
GO:0016021 integral component of membrane 4.2% (5/119) 1.81 0.014226 0.041205
GO:0031224 intrinsic component of membrane 4.2% (5/119) 1.81 0.014226 0.041205
GO:0048037 cofactor binding 3.36% (4/119) 2.01 0.017732 0.047537
GO:0017009 protein-phycocyanobilin linkage 0.84% (1/119) 5.7 0.019132 0.048213
GO:0009084 glutamine family amino acid biosynthetic process 0.84% (1/119) 5.7 0.019132 0.048213
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 0.84% (1/119) 5.7 0.019132 0.048213
GO:0017007 protein-bilin linkage 0.84% (1/119) 5.7 0.019132 0.048213
GO:0017006 protein-tetrapyrrole linkage 0.84% (1/119) 5.7 0.019132 0.048213
GO:0043933 protein-containing complex subunit organization 1.68% (2/119) 3.27 0.018271 0.048467
GO:0050662 coenzyme binding 2.52% (3/119) 2.39 0.019922 0.049219
GO:0043168 anion binding 8.4% (10/119) 1.09 0.019734 0.049238
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_10 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_37 0.022 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_63 0.024 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_132 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_271 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_33 0.031 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_93 0.021 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_103 0.034 Gene family Compare
Oryza sativa HCCA cluster Cluster_272 0.025 Gene family Compare
Oryza sativa HCCA cluster Cluster_313 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_55 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_183 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_307 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_257 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_207 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_332 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_339 0.015 Gene family Compare
Sequences (119) (download table)

InterPro Domains

GO Terms

Family Terms