Coexpression cluster: Cluster_172 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044424 intracellular part 12.94% (11/85) 2.58 2e-06 0.000604
GO:0044464 cell part 12.94% (11/85) 2.47 5e-06 0.000634
GO:1990904 ribonucleoprotein complex 5.88% (5/85) 3.86 2.5e-05 0.002295
GO:0044444 cytoplasmic part 7.06% (6/85) 3.26 4e-05 0.002744
GO:0003735 structural constituent of ribosome 4.71% (4/85) 3.83 0.000186 0.007339
GO:0032991 protein-containing complex 8.24% (7/85) 2.36 0.000442 0.008132
GO:0043228 non-membrane-bounded organelle 4.71% (4/85) 3.52 0.000414 0.008152
GO:0043232 intracellular non-membrane-bounded organelle 4.71% (4/85) 3.52 0.000414 0.008152
GO:0043603 cellular amide metabolic process 4.71% (4/85) 3.52 0.000414 0.008152
GO:0006412 translation 4.71% (4/85) 3.84 0.000178 0.008166
GO:0043604 amide biosynthetic process 4.71% (4/85) 3.61 0.000328 0.008217
GO:0006518 peptide metabolic process 4.71% (4/85) 3.64 0.000302 0.008333
GO:0005198 structural molecule activity 4.71% (4/85) 3.68 0.000278 0.00852
GO:0043043 peptide biosynthetic process 4.71% (4/85) 3.71 0.000255 0.008802
GO:0005840 ribosome 4.71% (4/85) 3.88 0.000161 0.008896
GO:0043226 organelle 5.88% (5/85) 2.9 0.000573 0.009301
GO:0043229 intracellular organelle 5.88% (5/85) 2.91 0.000547 0.009431
GO:0044428 nuclear part 3.53% (3/85) 3.86 0.001168 0.017909
GO:0005575 cellular_component 12.94% (11/85) 1.49 0.0018 0.02614
GO:0006376 mRNA splice site selection 1.18% (1/85) 8.18 0.003441 0.028779
GO:0005685 U1 snRNP 1.18% (1/85) 8.18 0.003441 0.028779
GO:0016531 copper chaperone activity 1.18% (1/85) 8.18 0.003441 0.028779
GO:0016480 negative regulation of transcription by RNA polymerase III 1.18% (1/85) 8.18 0.003441 0.028779
GO:0016846 carbon-sulfur lyase activity 1.18% (1/85) 8.18 0.003441 0.028779
GO:0070013 intracellular organelle lumen 1.18% (1/85) 8.18 0.003441 0.028779
GO:0043233 organelle lumen 1.18% (1/85) 8.18 0.003441 0.028779
GO:0031974 membrane-enclosed lumen 1.18% (1/85) 8.18 0.003441 0.028779
GO:0031970 organelle envelope lumen 1.18% (1/85) 8.18 0.003441 0.028779
GO:0004408 holocytochrome-c synthase activity 1.18% (1/85) 8.18 0.003441 0.028779
GO:0016530 metallochaperone activity 1.18% (1/85) 8.18 0.003441 0.028779
GO:0005758 mitochondrial intermembrane space 1.18% (1/85) 8.18 0.003441 0.028779
GO:0006359 regulation of transcription by RNA polymerase III 1.18% (1/85) 8.18 0.003441 0.028779
GO:1990234 transferase complex 2.35% (2/85) 4.38 0.004173 0.033879
GO:0009059 macromolecule biosynthetic process 4.71% (4/85) 2.55 0.004978 0.039256
GO:0034645 cellular macromolecule biosynthetic process 4.71% (4/85) 2.77 0.002904 0.040069
GO:0019212 phosphatase inhibitor activity 1.18% (1/85) 7.18 0.00687 0.042138
GO:0043666 regulation of phosphoprotein phosphatase activity 1.18% (1/85) 7.18 0.00687 0.042138
GO:0004864 protein phosphatase inhibitor activity 1.18% (1/85) 7.18 0.00687 0.042138
GO:0035304 regulation of protein dephosphorylation 1.18% (1/85) 7.18 0.00687 0.042138
GO:0140104 molecular carrier activity 1.18% (1/85) 7.18 0.00687 0.042138
GO:0120114 Sm-like protein family complex 1.18% (1/85) 7.18 0.00687 0.042138
GO:0030532 small nuclear ribonucleoprotein complex 1.18% (1/85) 7.18 0.00687 0.042138
GO:0097525 spliceosomal snRNP complex 1.18% (1/85) 7.18 0.00687 0.042138
GO:0008150 biological_process 23.53% (20/85) 0.86 0.005566 0.042675
GO:0051253 negative regulation of RNA metabolic process 1.18% (1/85) 6.6 0.010288 0.049815
GO:1902679 negative regulation of RNA biosynthetic process 1.18% (1/85) 6.6 0.010288 0.049815
GO:0045892 negative regulation of transcription, DNA-templated 1.18% (1/85) 6.6 0.010288 0.049815
GO:0010921 regulation of phosphatase activity 1.18% (1/85) 6.6 0.010288 0.049815
GO:0035303 regulation of dephosphorylation 1.18% (1/85) 6.6 0.010288 0.049815
GO:0071826 ribonucleoprotein complex subunit organization 1.18% (1/85) 6.6 0.010288 0.049815
GO:0022618 ribonucleoprotein complex assembly 1.18% (1/85) 6.6 0.010288 0.049815
GO:0070461 SAGA-type complex 1.18% (1/85) 6.6 0.010288 0.049815
GO:1903507 negative regulation of nucleic acid-templated transcription 1.18% (1/85) 6.6 0.010288 0.049815
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_261 0.014 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_171 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_2 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_101 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_80 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_256 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_239 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_373 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_187 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_204 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_96 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_297 0.016 Gene family Compare
Sequences (85) (download table)

InterPro Domains

GO Terms

Family Terms