Coexpression cluster: Cluster_45 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 9.58% (23/240) 3.34 0.0 0.0
GO:0003676 nucleic acid binding 12.08% (29/240) 2.17 0.0 0.0
GO:0006396 RNA processing 5.42% (13/240) 3.69 0.0 0.0
GO:0005488 binding 28.75% (69/240) 1.14 0.0 0.0
GO:0090304 nucleic acid metabolic process 9.58% (23/240) 2.36 0.0 0.0
GO:0016072 rRNA metabolic process 2.92% (7/240) 5.17 0.0 0.0
GO:0006364 rRNA processing 2.92% (7/240) 5.17 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 11.25% (27/240) 2.07 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 11.67% (28/240) 2.02 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 11.67% (28/240) 2.0 0.0 0.0
GO:1901363 heterocyclic compound binding 17.92% (43/240) 1.47 0.0 0.0
GO:0097159 organic cyclic compound binding 17.92% (43/240) 1.47 0.0 0.0
GO:0046483 heterocycle metabolic process 11.25% (27/240) 1.97 0.0 0.0
GO:0034470 ncRNA processing 3.75% (9/240) 4.13 0.0 0.0
GO:0003674 molecular_function 37.5% (90/240) 0.83 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 11.25% (27/240) 1.79 0.0 0.0
GO:0034660 ncRNA metabolic process 4.17% (10/240) 3.44 0.0 1e-06
GO:0042254 ribosome biogenesis 2.08% (5/240) 5.55 0.0 1e-06
GO:0022613 ribonucleoprotein complex biogenesis 2.08% (5/240) 5.55 0.0 1e-06
GO:0016741 transferase activity, transferring one-carbon groups 4.17% (10/240) 3.35 0.0 1e-06
GO:0044085 cellular component biogenesis 2.08% (5/240) 5.42 0.0 1e-06
GO:0097659 nucleic acid-templated transcription 2.92% (7/240) 4.21 0.0 1e-06
GO:0006351 transcription, DNA-templated 2.92% (7/240) 4.21 0.0 1e-06
GO:0044237 cellular metabolic process 15.0% (36/240) 1.35 0.0 3e-06
GO:0008168 methyltransferase activity 3.75% (9/240) 3.29 0.0 5e-06
GO:0003723 RNA binding 4.17% (10/240) 3.0 1e-06 7e-06
GO:0030684 preribosome 1.67% (4/240) 5.69 1e-06 7e-06
GO:0140098 catalytic activity, acting on RNA 4.17% (10/240) 2.94 1e-06 9e-06
GO:0006807 nitrogen compound metabolic process 14.17% (34/240) 1.25 3e-06 3e-05
GO:0043227 membrane-bounded organelle 3.33% (8/240) 3.16 3e-06 3.5e-05
GO:0043231 intracellular membrane-bounded organelle 3.33% (8/240) 3.16 3e-06 3.5e-05
GO:0032774 RNA biosynthetic process 2.92% (7/240) 3.43 4e-06 4.1e-05
GO:0005634 nucleus 2.92% (7/240) 3.38 5e-06 4.9e-05
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.08% (5/240) 4.25 6e-06 5.5e-05
GO:0044238 primary metabolic process 14.58% (35/240) 1.17 6e-06 5.7e-05
GO:0034062 5'-3' RNA polymerase activity 2.08% (5/240) 4.1 1e-05 8.7e-05
GO:0097747 RNA polymerase activity 2.08% (5/240) 4.1 1e-05 8.7e-05
GO:0043170 macromolecule metabolic process 11.67% (28/240) 1.29 1.2e-05 0.000102
GO:0071704 organic substance metabolic process 14.58% (35/240) 1.11 1.5e-05 0.000125
GO:0032040 small-subunit processome 1.25% (3/240) 5.69 1.8e-05 0.000148
GO:0044424 intracellular part 7.08% (17/240) 1.71 2.1e-05 0.00016
GO:0009987 cellular process 16.25% (39/240) 1.01 2e-05 0.000161
GO:0043229 intracellular organelle 4.17% (10/240) 2.41 2.1e-05 0.000163
GO:0043226 organelle 4.17% (10/240) 2.4 2.2e-05 0.00017
GO:0008152 metabolic process 16.67% (40/240) 0.99 2.3e-05 0.00017
GO:0008150 biological_process 22.5% (54/240) 0.79 3.4e-05 0.000244
GO:0044464 cell part 7.08% (17/240) 1.6 5.4e-05 0.000385
GO:0005515 protein binding 11.67% (28/240) 1.13 9.2e-05 0.000624
GO:0019438 aromatic compound biosynthetic process 4.58% (11/240) 2.03 9.1e-05 0.000631
GO:0034654 nucleobase-containing compound biosynthetic process 4.17% (10/240) 2.12 0.000112 0.000743
GO:1901362 organic cyclic compound biosynthetic process 4.58% (11/240) 1.97 0.000132 0.000862
GO:0005524 ATP binding 7.92% (19/240) 1.39 0.000139 0.000873
GO:0035639 purine ribonucleoside triphosphate binding 8.75% (21/240) 1.3 0.000139 0.000887
GO:0032559 adenyl ribonucleotide binding 7.92% (19/240) 1.38 0.000154 0.000932
GO:0032555 purine ribonucleotide binding 8.75% (21/240) 1.29 0.000152 0.000938
GO:0030554 adenyl nucleotide binding 7.92% (19/240) 1.37 0.000159 0.000947
GO:0017076 purine nucleotide binding 8.75% (21/240) 1.29 0.000164 0.00096
GO:0032553 ribonucleotide binding 8.75% (21/240) 1.26 0.000203 0.001167
GO:0097367 carbohydrate derivative binding 8.75% (21/240) 1.26 0.000213 0.0012
GO:0043168 anion binding 9.17% (22/240) 1.21 0.000235 0.001307
GO:0008173 RNA methyltransferase activity 1.25% (3/240) 4.57 0.000241 0.001316
GO:0008144 drug binding 7.92% (19/240) 1.32 0.00026 0.001398
GO:0005730 nucleolus 0.83% (2/240) 6.1 0.00028 0.001481
GO:0016740 transferase activity 7.92% (19/240) 1.28 0.000356 0.00185
GO:0018130 heterocycle biosynthetic process 4.17% (10/240) 1.89 0.000416 0.002129
GO:0003743 translation initiation factor activity 1.25% (3/240) 4.27 0.000462 0.002296
GO:0006457 protein folding 1.25% (3/240) 4.27 0.000462 0.002296
GO:0005852 eukaryotic translation initiation factor 3 complex 0.83% (2/240) 5.69 0.000557 0.002727
GO:1901265 nucleoside phosphate binding 8.75% (21/240) 1.15 0.000599 0.00285
GO:0000166 nucleotide binding 8.75% (21/240) 1.15 0.000599 0.00285
GO:0005575 cellular_component 9.58% (23/240) 1.05 0.000784 0.003679
GO:0016779 nucleotidyltransferase activity 2.08% (5/240) 2.74 0.000929 0.004296
GO:0036094 small molecule binding 8.75% (21/240) 1.08 0.001058 0.004824
GO:0005737 cytoplasm 1.67% (4/240) 3.1 0.001209 0.005442
GO:0034645 cellular macromolecule biosynthetic process 2.92% (7/240) 2.07 0.001458 0.006472
GO:0043167 ion binding 10.42% (25/240) 0.91 0.0018 0.007786
GO:0008135 translation factor activity, RNA binding 1.25% (3/240) 3.63 0.001779 0.007793
GO:1990904 ribonucleoprotein complex 2.08% (5/240) 2.36 0.002957 0.012623
GO:0044271 cellular nitrogen compound biosynthetic process 4.17% (10/240) 1.5 0.003056 0.012882
GO:0009059 macromolecule biosynthetic process 2.92% (7/240) 1.86 0.003417 0.014224
GO:0017016 Ras GTPase binding 0.83% (2/240) 4.23 0.00488 0.019579
GO:0008536 Ran GTPase binding 0.83% (2/240) 4.23 0.00488 0.019579
GO:0031267 small GTPase binding 0.83% (2/240) 4.23 0.00488 0.019579
GO:0051082 unfolded protein binding 0.83% (2/240) 4.1 0.005819 0.023067
GO:0071840 cellular component organization or biogenesis 2.08% (5/240) 2.06 0.007096 0.0278
GO:0009058 biosynthetic process 5.0% (12/240) 1.16 0.00819 0.031711
GO:0046040 IMP metabolic process 0.42% (1/240) 6.69 0.009716 0.031719
GO:0006189 'de novo' IMP biosynthetic process 0.42% (1/240) 6.69 0.009716 0.031719
GO:0030515 snoRNA binding 0.42% (1/240) 6.69 0.009716 0.031719
GO:0003922 GMP synthase (glutamine-hydrolyzing) activity 0.42% (1/240) 6.69 0.009716 0.031719
GO:0005732 small nucleolar ribonucleoprotein complex 0.42% (1/240) 6.69 0.009716 0.031719
GO:1901070 guanosine-containing compound biosynthetic process 0.42% (1/240) 6.69 0.009716 0.031719
GO:0046037 GMP metabolic process 0.42% (1/240) 6.69 0.009716 0.031719
GO:0044452 nucleolar part 0.42% (1/240) 6.69 0.009716 0.031719
GO:0000959 mitochondrial RNA metabolic process 0.42% (1/240) 6.69 0.009716 0.031719
GO:0034457 Mpp10 complex 0.42% (1/240) 6.69 0.009716 0.031719
GO:0003883 CTP synthase activity 0.42% (1/240) 6.69 0.009716 0.031719
GO:0006188 IMP biosynthetic process 0.42% (1/240) 6.69 0.009716 0.031719
GO:0006177 GMP biosynthetic process 0.42% (1/240) 6.69 0.009716 0.031719
GO:0044249 cellular biosynthetic process 4.58% (11/240) 1.18 0.01012 0.032718
GO:0051020 GTPase binding 0.83% (2/240) 3.78 0.009081 0.034364
GO:0006413 translational initiation 0.83% (2/240) 3.78 0.009081 0.034364
GO:0003824 catalytic activity 15.0% (36/240) 0.58 0.009638 0.036061
GO:1901576 organic substance biosynthetic process 4.58% (11/240) 1.14 0.011917 0.038157
GO:0016874 ligase activity 1.67% (4/240) 2.12 0.013897 0.044074
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 0.83% (2/240) 3.44 0.014417 0.045291
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_21 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_28 0.028 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_48 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_51 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_61 0.1 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_77 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_143 0.031 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_171 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_176 0.032 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_182 0.023 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_6 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_10 0.158 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_64 0.018 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_69 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_98 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_114 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_121 0.032 Gene family Compare
Oryza sativa HCCA cluster Cluster_65 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_67 0.124 Gene family Compare
Oryza sativa HCCA cluster Cluster_81 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_119 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_284 0.042 Gene family Compare
Picea abies HCCA cluster Cluster_64 0.024 Gene family Compare
Picea abies HCCA cluster Cluster_258 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_339 0.029 Gene family Compare
Picea abies HCCA cluster Cluster_432 0.021 Gene family Compare
Picea abies HCCA cluster Cluster_434 0.021 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_55 0.02 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_66 0.043 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_91 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_104 0.036 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_109 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_138 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_189 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_14 0.06 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_16 0.025 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_37 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_121 0.049 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_165 0.036 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_254 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_272 0.021 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_288 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_301 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_39 0.043 Gene family Compare
Vitis vinifera HCCA cluster Cluster_82 0.026 Gene family Compare
Vitis vinifera HCCA cluster Cluster_85 0.078 Gene family Compare
Vitis vinifera HCCA cluster Cluster_149 0.028 Gene family Compare
Vitis vinifera HCCA cluster Cluster_172 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_206 0.021 Gene family Compare
Vitis vinifera HCCA cluster Cluster_224 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_43 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_86 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_148 0.038 Gene family Compare
Zea mays HCCA cluster Cluster_172 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_173 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_185 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_191 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_221 0.026 Gene family Compare
Zea mays HCCA cluster Cluster_259 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_307 0.037 Gene family Compare
Zea mays HCCA cluster Cluster_331 0.037 Gene family Compare
Zea mays HCCA cluster Cluster_346 0.018 Gene family Compare
Sequences (240) (download table)

InterPro Domains

GO Terms

Family Terms