Coexpression cluster: Cluster_71 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004812 aminoacyl-tRNA ligase activity 8.54% (7/82) 5.62 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 8.54% (7/82) 5.62 0.0 0.0
GO:0043039 tRNA aminoacylation 8.54% (7/82) 5.65 0.0 0.0
GO:0043038 amino acid activation 8.54% (7/82) 5.65 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 8.54% (7/82) 5.76 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 8.54% (7/82) 5.04 0.0 0.0
GO:0006399 tRNA metabolic process 8.54% (7/82) 4.83 0.0 0.0
GO:0034660 ncRNA metabolic process 8.54% (7/82) 4.47 0.0 1e-06
GO:0016874 ligase activity 8.54% (7/82) 4.47 0.0 1e-06
GO:0006520 cellular amino acid metabolic process 8.54% (7/82) 4.5 0.0 1e-06
GO:1901564 organonitrogen compound metabolic process 19.51% (16/82) 2.38 0.0 1e-06
GO:0019752 carboxylic acid metabolic process 8.54% (7/82) 4.02 0.0 4e-06
GO:0006082 organic acid metabolic process 8.54% (7/82) 3.97 0.0 4e-06
GO:0140098 catalytic activity, acting on RNA 8.54% (7/82) 3.98 0.0 4e-06
GO:0034641 cellular nitrogen compound metabolic process 17.07% (14/82) 2.39 0.0 4e-06
GO:0043436 oxoacid metabolic process 8.54% (7/82) 3.99 0.0 4e-06
GO:0044237 cellular metabolic process 21.95% (18/82) 1.9 1e-06 1.1e-05
GO:0071704 organic substance metabolic process 23.17% (19/82) 1.78 2e-06 1.8e-05
GO:0005840 ribosome 6.1% (5/82) 4.25 7e-06 6.2e-05
GO:0043170 macromolecule metabolic process 18.29% (15/82) 1.94 7e-06 6.5e-05
GO:1901566 organonitrogen compound biosynthetic process 8.54% (7/82) 3.28 8e-06 6.5e-05
GO:0006412 translation 6.1% (5/82) 4.22 7e-06 6.7e-05
GO:0003735 structural constituent of ribosome 6.1% (5/82) 4.2 8e-06 6.8e-05
GO:0008152 metabolic process 24.39% (20/82) 1.54 1.1e-05 8.5e-05
GO:0043043 peptide biosynthetic process 6.1% (5/82) 4.08 1.2e-05 8.9e-05
GO:0005198 structural molecule activity 6.1% (5/82) 4.05 1.3e-05 9.2e-05
GO:0016070 RNA metabolic process 8.54% (7/82) 3.17 1.3e-05 9.4e-05
GO:0006518 peptide metabolic process 6.1% (5/82) 4.02 1.5e-05 9.9e-05
GO:0043604 amide biosynthetic process 6.1% (5/82) 3.99 1.6e-05 0.000106
GO:0043228 non-membrane-bounded organelle 6.1% (5/82) 3.9 2.2e-05 0.000122
GO:0043232 intracellular non-membrane-bounded organelle 6.1% (5/82) 3.9 2.2e-05 0.000122
GO:0043603 cellular amide metabolic process 6.1% (5/82) 3.9 2.2e-05 0.000122
GO:0034645 cellular macromolecule biosynthetic process 7.32% (6/82) 3.4 2.3e-05 0.000123
GO:0006807 nitrogen compound metabolic process 19.51% (16/82) 1.71 2.4e-05 0.000125
GO:0009987 cellular process 23.17% (19/82) 1.53 2.1e-05 0.000128
GO:1990904 ribonucleoprotein complex 6.1% (5/82) 3.91 2.1e-05 0.000131
GO:0044444 cytoplasmic part 7.32% (6/82) 3.31 3.2e-05 0.000165
GO:0044249 cellular biosynthetic process 10.98% (9/82) 2.44 4.2e-05 0.000208
GO:0043229 intracellular organelle 7.32% (6/82) 3.23 4.5e-05 0.000217
GO:0043226 organelle 7.32% (6/82) 3.21 4.8e-05 0.000224
GO:1901576 organic substance biosynthetic process 10.98% (9/82) 2.4 5e-05 0.000231
GO:0009059 macromolecule biosynthetic process 7.32% (6/82) 3.18 5.3e-05 0.000239
GO:0044238 primary metabolic process 19.51% (16/82) 1.59 6.5e-05 0.000284
GO:0009058 biosynthetic process 10.98% (9/82) 2.29 9.1e-05 0.000388
GO:0044281 small molecule metabolic process 8.54% (7/82) 2.67 0.000119 0.000498
GO:0044464 cell part 10.98% (9/82) 2.23 0.000125 0.000512
GO:0044271 cellular nitrogen compound biosynthetic process 8.54% (7/82) 2.54 0.000206 0.000825
GO:0008150 biological_process 28.05% (23/82) 1.11 0.000228 0.000858
GO:1901363 heterocyclic compound binding 18.29% (15/82) 1.5 0.000225 0.000863
GO:0097159 organic cyclic compound binding 18.29% (15/82) 1.5 0.000225 0.000863
GO:0044424 intracellular part 9.76% (8/82) 2.17 0.000397 0.001463
GO:0046483 heterocycle metabolic process 10.98% (9/82) 1.94 0.000557 0.002015
GO:0006725 cellular aromatic compound metabolic process 10.98% (9/82) 1.93 0.000575 0.002038
GO:1901360 organic cyclic compound metabolic process 10.98% (9/82) 1.91 0.000635 0.00217
GO:0035639 purine ribonucleoside triphosphate binding 12.2% (10/82) 1.78 0.00063 0.002193
GO:0032555 purine ribonucleotide binding 12.2% (10/82) 1.77 0.000664 0.002229
GO:0017076 purine nucleotide binding 12.2% (10/82) 1.77 0.000693 0.002287
GO:0032553 ribonucleotide binding 12.2% (10/82) 1.74 0.000782 0.002534
GO:0001883 purine nucleoside binding 4.88% (4/82) 3.23 0.00088 0.002546
GO:0032550 purine ribonucleoside binding 4.88% (4/82) 3.23 0.00088 0.002546
GO:0005525 GTP binding 4.88% (4/82) 3.23 0.00088 0.002546
GO:0032549 ribonucleoside binding 4.88% (4/82) 3.23 0.00088 0.002546
GO:0032561 guanyl ribonucleotide binding 4.88% (4/82) 3.23 0.00088 0.002546
GO:0097367 carbohydrate derivative binding 12.2% (10/82) 1.74 0.000802 0.002556
GO:0001882 nucleoside binding 4.88% (4/82) 3.22 0.000906 0.002582
GO:0003674 molecular_function 36.59% (30/82) 0.79 0.00092 0.002582
GO:0019001 guanyl nucleotide binding 4.88% (4/82) 3.2 0.00096 0.002653
GO:0090304 nucleic acid metabolic process 8.54% (7/82) 2.19 0.000859 0.002691
GO:0033014 tetrapyrrole biosynthetic process 2.44% (2/82) 5.23 0.001267 0.003453
GO:0003924 GTPase activity 3.66% (3/82) 3.8 0.001328 0.003566
GO:0000166 nucleotide binding 12.2% (10/82) 1.62 0.001452 0.003739
GO:1901265 nucleoside phosphate binding 12.2% (10/82) 1.62 0.001452 0.003739
GO:0043168 anion binding 12.2% (10/82) 1.62 0.001452 0.003739
GO:0005622 intracellular 3.66% (3/82) 3.71 0.001578 0.004008
GO:0033013 tetrapyrrole metabolic process 2.44% (2/82) 4.99 0.001794 0.004498
GO:0036094 small molecule binding 12.2% (10/82) 1.56 0.002023 0.005004
GO:0003824 catalytic activity 20.73% (17/82) 1.04 0.002895 0.007067
GO:0006423 cysteinyl-tRNA aminoacylation 1.22% (1/82) 8.23 0.00332 0.007611
GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity 1.22% (1/82) 8.23 0.00332 0.007611
GO:0004655 porphobilinogen synthase activity 1.22% (1/82) 8.23 0.00332 0.007611
GO:0016744 transferase activity, transferring aldehyde or ketonic groups 1.22% (1/82) 8.23 0.00332 0.007611
GO:0004817 cysteine-tRNA ligase activity 1.22% (1/82) 8.23 0.00332 0.007611
GO:0005575 cellular_component 12.2% (10/82) 1.4 0.004419 0.01001
GO:0043167 ion binding 13.41% (11/82) 1.28 0.005354 0.011983
GO:0044267 cellular protein metabolic process 7.32% (6/82) 1.87 0.006156 0.013617
GO:0006139 nucleobase-containing compound metabolic process 8.54% (7/82) 1.67 0.00645 0.014099
GO:0031072 heat shock protein binding 1.22% (1/82) 7.23 0.006628 0.01416
GO:0004853 uroporphyrinogen decarboxylase activity 1.22% (1/82) 7.23 0.006628 0.01416
GO:0019538 protein metabolic process 8.54% (7/82) 1.59 0.008769 0.018524
GO:0006721 terpenoid metabolic process 1.22% (1/82) 6.65 0.009926 0.020507
GO:0016114 terpenoid biosynthetic process 1.22% (1/82) 6.65 0.009926 0.020507
GO:0032991 protein-containing complex 6.1% (5/82) 1.92 0.010389 0.021229
GO:0005737 cytoplasm 2.44% (2/82) 3.65 0.011123 0.022485
GO:0016868 intramolecular transferase activity, phosphotransferases 1.22% (1/82) 6.23 0.013213 0.025609
GO:0017006 protein-tetrapyrrole linkage 1.22% (1/82) 6.23 0.013213 0.025609
GO:0017007 protein-bilin linkage 1.22% (1/82) 6.23 0.013213 0.025609
GO:0017009 protein-phycocyanobilin linkage 1.22% (1/82) 6.23 0.013213 0.025609
GO:0016829 lyase activity 3.66% (3/82) 2.53 0.015469 0.029675
GO:0000049 tRNA binding 1.22% (1/82) 5.91 0.016489 0.031313
GO:0005488 binding 21.95% (18/82) 0.75 0.017542 0.03298
GO:0044260 cellular macromolecule metabolic process 8.54% (7/82) 1.39 0.017728 0.032999
GO:0006414 translational elongation 1.22% (1/82) 5.65 0.019755 0.035711
GO:0003746 translation elongation factor activity 1.22% (1/82) 5.65 0.019755 0.035711
GO:0008299 isoprenoid biosynthetic process 1.22% (1/82) 5.65 0.019755 0.035711
GO:0006720 isoprenoid metabolic process 1.22% (1/82) 5.43 0.02301 0.041198
GO:0005739 mitochondrion 1.22% (1/82) 5.23 0.026254 0.046563
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_30 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_43 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_77 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_140 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_176 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_192 0.037 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_214 0.03 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_265 0.02 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_54 0.017 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_85 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_133 0.014 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_8 0.026 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_9 0.031 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_35 0.021 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_84 0.042 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_86 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_170 0.053 Gene family Compare
Oryza sativa HCCA cluster Cluster_228 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_256 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_283 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_284 0.022 Gene family Compare
Oryza sativa HCCA cluster Cluster_288 0.024 Gene family Compare
Picea abies HCCA cluster Cluster_65 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_107 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_186 0.023 Gene family Compare
Picea abies HCCA cluster Cluster_373 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_393 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_11 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_43 0.02 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_66 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_165 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_167 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_203 0.023 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_48 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.024 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_141 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_149 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_214 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_218 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_226 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_234 0.026 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_272 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_291 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_2 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_15 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_95 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_112 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_120 0.035 Gene family Compare
Vitis vinifera HCCA cluster Cluster_184 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_120 0.036 Gene family Compare
Zea mays HCCA cluster Cluster_163 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_176 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_209 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_227 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_233 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_246 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_258 0.032 Gene family Compare
Zea mays HCCA cluster Cluster_269 0.014 Gene family Compare
Sequences (82) (download table)

InterPro Domains

GO Terms

Family Terms