Coexpression cluster: Cluster_73 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 8.96% (6/67) 3.36 2.6e-05 0.004267
GO:0006139 nucleobase-containing compound metabolic process 8.96% (6/67) 2.94 0.000131 0.005402
GO:1901360 organic cyclic compound metabolic process 8.96% (6/67) 2.77 0.000245 0.005784
GO:0006725 cellular aromatic compound metabolic process 8.96% (6/67) 2.84 0.000188 0.006215
GO:0046483 heterocycle metabolic process 8.96% (6/67) 2.79 0.000232 0.006384
GO:0044237 cellular metabolic process 17.91% (12/67) 1.83 0.000117 0.006439
GO:0034641 cellular nitrogen compound metabolic process 8.96% (6/67) 2.69 0.000332 0.00685
GO:0006364 rRNA processing 2.99% (2/67) 5.79 0.000576 0.008646
GO:0016072 rRNA metabolic process 2.99% (2/67) 5.79 0.000576 0.008646
GO:0016070 RNA metabolic process 7.46% (5/67) 3.4 0.000111 0.009123
GO:0006396 RNA processing 4.48% (3/67) 4.26 0.000517 0.009471
GO:0009987 cellular process 20.9% (14/67) 1.35 0.000934 0.012839
GO:0006807 nitrogen compound metabolic process 16.42% (11/67) 1.54 0.001229 0.015595
GO:0034470 ncRNA processing 2.99% (2/67) 5.06 0.001634 0.019255
GO:0043254 regulation of protein-containing complex assembly 1.49% (1/67) 7.38 0.006004 0.019425
GO:0032956 regulation of actin cytoskeleton organization 1.49% (1/67) 7.38 0.006004 0.019425
GO:0043244 regulation of protein-containing complex disassembly 1.49% (1/67) 7.38 0.006004 0.019425
GO:0032970 regulation of actin filament-based process 1.49% (1/67) 7.38 0.006004 0.019425
GO:0043242 negative regulation of protein-containing complex disassembly 1.49% (1/67) 7.38 0.006004 0.019425
GO:0032272 negative regulation of protein polymerization 1.49% (1/67) 7.38 0.006004 0.019425
GO:0032535 regulation of cellular component size 1.49% (1/67) 7.38 0.006004 0.019425
GO:0032271 regulation of protein polymerization 1.49% (1/67) 7.38 0.006004 0.019425
GO:0030832 regulation of actin filament length 1.49% (1/67) 7.38 0.006004 0.019425
GO:0030833 regulation of actin filament polymerization 1.49% (1/67) 7.38 0.006004 0.019425
GO:0030834 regulation of actin filament depolymerization 1.49% (1/67) 7.38 0.006004 0.019425
GO:0008064 regulation of actin polymerization or depolymerization 1.49% (1/67) 7.38 0.006004 0.019425
GO:0030835 negative regulation of actin filament depolymerization 1.49% (1/67) 7.38 0.006004 0.019425
GO:0030837 negative regulation of actin filament polymerization 1.49% (1/67) 7.38 0.006004 0.019425
GO:0001522 pseudouridine synthesis 1.49% (1/67) 7.38 0.006004 0.019425
GO:0031333 negative regulation of protein-containing complex assembly 1.49% (1/67) 7.38 0.006004 0.019425
GO:0090066 regulation of anatomical structure size 1.49% (1/67) 7.38 0.006004 0.019425
GO:0051016 barbed-end actin filament capping 1.49% (1/67) 7.38 0.006004 0.019425
GO:0110053 regulation of actin filament organization 1.49% (1/67) 7.38 0.006004 0.019425
GO:1902904 negative regulation of supramolecular fiber organization 1.49% (1/67) 7.38 0.006004 0.019425
GO:1902903 regulation of supramolecular fiber organization 1.49% (1/67) 7.38 0.006004 0.019425
GO:1901879 regulation of protein depolymerization 1.49% (1/67) 7.38 0.006004 0.019425
GO:1901880 negative regulation of protein depolymerization 1.49% (1/67) 7.38 0.006004 0.019425
GO:0051693 actin filament capping 1.49% (1/67) 7.38 0.006004 0.019425
GO:0030688 preribosome, small subunit precursor 1.49% (1/67) 7.38 0.006004 0.019425
GO:0051494 negative regulation of cytoskeleton organization 1.49% (1/67) 7.38 0.006004 0.019425
GO:0051493 regulation of cytoskeleton organization 1.49% (1/67) 7.38 0.006004 0.019425
GO:0034062 5'-3' RNA polymerase activity 2.99% (2/67) 4.06 0.006452 0.020087
GO:0097747 RNA polymerase activity 2.99% (2/67) 4.06 0.006452 0.020087
GO:0043170 macromolecule metabolic process 14.93% (10/67) 1.56 0.001899 0.020888
GO:0008150 biological_process 25.37% (17/67) 1.02 0.0031 0.023254
GO:0090305 nucleic acid phosphodiester bond hydrolysis 1.49% (1/67) 8.38 0.003007 0.023623
GO:0005840 ribosome 1.49% (1/67) 8.38 0.003007 0.023623
GO:0090501 RNA phosphodiester bond hydrolysis 1.49% (1/67) 8.38 0.003007 0.023623
GO:0000469 cleavage involved in rRNA processing 1.49% (1/67) 8.38 0.003007 0.023623
GO:0008152 metabolic process 17.91% (12/67) 1.33 0.002563 0.026431
GO:0051129 negative regulation of cellular component organization 1.49% (1/67) 6.79 0.008993 0.026497
GO:0010639 negative regulation of organelle organization 1.49% (1/67) 6.79 0.008993 0.026497
GO:0033043 regulation of organelle organization 1.49% (1/67) 6.79 0.008993 0.026497
GO:0044238 primary metabolic process 16.42% (11/67) 1.39 0.002861 0.027772
GO:0071704 organic substance metabolic process 16.42% (11/67) 1.32 0.003986 0.028598
GO:0006338 chromatin remodeling 1.49% (1/67) 6.38 0.011973 0.033483
GO:0044087 regulation of cellular component biogenesis 1.49% (1/67) 6.38 0.011973 0.033483
GO:0030684 preribosome 1.49% (1/67) 6.38 0.011973 0.033483
GO:0016779 nucleotidyltransferase activity 2.99% (2/67) 3.57 0.012352 0.033968
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.99% (2/67) 4.17 0.005541 0.038096
GO:0034660 ncRNA metabolic process 2.99% (2/67) 3.42 0.014993 0.038655
GO:0000105 histidine biosynthetic process 1.49% (1/67) 6.06 0.014944 0.039138
GO:0006547 histidine metabolic process 1.49% (1/67) 6.06 0.014944 0.039138
GO:0051128 regulation of cellular component organization 1.49% (1/67) 6.06 0.014944 0.039138
GO:0016043 cellular component organization 2.99% (2/67) 3.31 0.017363 0.044075
GO:0071840 cellular component organization or biogenesis 2.99% (2/67) 3.25 0.018856 0.046437
GO:0140098 catalytic activity, acting on RNA 2.99% (2/67) 3.25 0.018856 0.046437
GO:0005488 binding 20.9% (14/67) 0.86 0.019209 0.046611
GO:0008652 cellular amino acid biosynthetic process 1.49% (1/67) 5.57 0.020859 0.049881
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_205 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_181 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_226 0.027 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_10 0.03 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_36 0.029 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_25 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_73 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_167 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_168 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_202 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_313 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_64 0.032 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_69 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_132 0.034 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_184 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_146 0.028 Archaeplastida Compare
Oryza sativa HCCA Cluster_312 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_203 0.034 Archaeplastida Compare
Picea abies HCCA Cluster_156 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_276 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_408 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_462 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_9 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_255 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_159 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_13 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_304 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_355 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_104 0.015 LandPlants Compare
Amborella trichopoda HCCA Cluster_106 0.016 LandPlants Compare
Amborella trichopoda HCCA Cluster_218 0.017 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_112 0.017 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_181 0.019 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_226 0.018 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_243 0.016 LandPlants Compare
Gingko biloba HCCA Cluster_167 0.026 LandPlants Compare
Gingko biloba HCCA Cluster_168 0.022 LandPlants Compare
Gingko biloba HCCA Cluster_202 0.022 LandPlants Compare
Gingko biloba HCCA Cluster_245 0.017 LandPlants Compare
Gingko biloba HCCA Cluster_262 0.015 LandPlants Compare
Gingko biloba HCCA Cluster_313 0.016 LandPlants Compare
Gingko biloba HCCA Cluster_340 0.017 LandPlants Compare
Marchantia polymorpha HCCA Cluster_2 0.016 LandPlants Compare
Marchantia polymorpha HCCA Cluster_64 0.031 LandPlants Compare
Marchantia polymorpha HCCA Cluster_69 0.02 LandPlants Compare
Marchantia polymorpha HCCA Cluster_116 0.016 LandPlants Compare
Marchantia polymorpha HCCA Cluster_132 0.034 LandPlants Compare
Marchantia polymorpha HCCA Cluster_143 0.017 LandPlants Compare
Marchantia polymorpha HCCA Cluster_184 0.019 LandPlants Compare
Oryza sativa HCCA Cluster_97 0.015 LandPlants Compare
Oryza sativa HCCA Cluster_127 0.017 LandPlants Compare
Oryza sativa HCCA Cluster_146 0.017 LandPlants Compare
Oryza sativa HCCA Cluster_312 0.026 LandPlants Compare
Physcomitrella patens HCCA Cluster_129 0.016 LandPlants Compare
Physcomitrella patens HCCA Cluster_203 0.034 LandPlants Compare
Physcomitrella patens HCCA Cluster_205 0.016 LandPlants Compare
Physcomitrella patens HCCA Cluster_229 0.015 LandPlants Compare
Physcomitrella patens HCCA Cluster_304 0.018 LandPlants Compare
Picea abies HCCA Cluster_156 0.02 LandPlants Compare
Picea abies HCCA Cluster_276 0.02 LandPlants Compare
Picea abies HCCA Cluster_408 0.019 LandPlants Compare
Picea abies HCCA Cluster_462 0.023 LandPlants Compare
Picea abies HCCA Cluster_477 0.016 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_53 0.015 LandPlants Compare
Solanum lycopersicum HCCA Cluster_9 0.025 LandPlants Compare
Solanum lycopersicum HCCA Cluster_162 0.017 LandPlants Compare
Solanum lycopersicum HCCA Cluster_255 0.016 LandPlants Compare
Solanum lycopersicum HCCA Cluster_274 0.017 LandPlants Compare
Vitis vinifera HCCA Cluster_4 0.016 LandPlants Compare
Vitis vinifera HCCA Cluster_88 0.015 LandPlants Compare
Vitis vinifera HCCA Cluster_159 0.028 LandPlants Compare
Vitis vinifera HCCA Cluster_239 0.016 LandPlants Compare
Zea mays HCCA Cluster_13 0.021 LandPlants Compare
Zea mays HCCA Cluster_162 0.015 LandPlants Compare
Zea mays HCCA Cluster_279 0.018 LandPlants Compare
Zea mays HCCA Cluster_295 0.018 LandPlants Compare
Zea mays HCCA Cluster_304 0.014 LandPlants Compare
Zea mays HCCA Cluster_355 0.021 LandPlants Compare
Zea mays HCCA Cluster_358 0.016 LandPlants Compare
Sequences (67) (download table)

InterPro Domains

GO Terms

Family Terms