Coexpression cluster: Cluster_172 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0030532 small nuclear ribonucleoprotein complex 3.33% (2/60) 7.54 4.9e-05 0.000752
GO:0097525 spliceosomal snRNP complex 3.33% (2/60) 7.54 4.9e-05 0.000752
GO:0003729 mRNA binding 3.33% (2/60) 7.54 4.9e-05 0.000752
GO:0120114 Sm-like protein family complex 3.33% (2/60) 7.54 4.9e-05 0.000752
GO:0043227 membrane-bounded organelle 10.0% (6/60) 3.22 4.6e-05 0.00112
GO:0016070 RNA metabolic process 10.0% (6/60) 3.22 4.6e-05 0.00112
GO:0043231 intracellular membrane-bounded organelle 10.0% (6/60) 3.22 4.6e-05 0.00112
GO:0044428 nuclear part 6.67% (4/60) 4.5 3.1e-05 0.001309
GO:0005634 nucleus 10.0% (6/60) 3.39 2.3e-05 0.001329
GO:0034622 cellular protein-containing complex assembly 5.0% (3/60) 5.02 0.000111 0.001577
GO:0065003 protein-containing complex assembly 5.0% (3/60) 4.88 0.000148 0.001933
GO:0006376 mRNA splice site selection 3.33% (2/60) 8.02 2.3e-05 0.001972
GO:0005685 U1 snRNP 3.33% (2/60) 8.02 2.3e-05 0.001972
GO:0022618 ribonucleoprotein complex assembly 3.33% (2/60) 6.64 0.00018 0.002035
GO:0071826 ribonucleoprotein complex subunit organization 3.33% (2/60) 6.64 0.00018 0.002035
GO:0022607 cellular component assembly 5.0% (3/60) 4.49 0.000335 0.003556
GO:0043933 protein-containing complex subunit organization 5.0% (3/60) 4.44 0.00037 0.003697
GO:0044424 intracellular part 15.0% (9/60) 1.93 0.000528 0.004988
GO:0044464 cell part 15.0% (9/60) 1.84 0.000844 0.007548
GO:0034457 Mpp10 complex 1.67% (1/60) 9.34 0.001538 0.010059
GO:0005732 small nucleolar ribonucleoprotein complex 1.67% (1/60) 9.34 0.001538 0.010059
GO:0044452 nucleolar part 1.67% (1/60) 9.34 0.001538 0.010059
GO:0032774 RNA biosynthetic process 5.0% (3/60) 3.75 0.001475 0.010902
GO:0090304 nucleic acid metabolic process 10.0% (6/60) 2.28 0.001437 0.011108
GO:0043226 organelle 10.0% (6/60) 2.29 0.001393 0.011273
GO:0043229 intracellular organelle 10.0% (6/60) 2.29 0.001393 0.011273
GO:0006396 RNA processing 5.0% (3/60) 3.64 0.001818 0.011444
GO:0006325 chromatin organization 3.33% (2/60) 4.88 0.002112 0.012824
GO:0032786 positive regulation of DNA-templated transcription, elongation 1.67% (1/60) 8.34 0.003075 0.015839
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 1.67% (1/60) 8.34 0.003075 0.015839
GO:0032784 regulation of DNA-templated transcription, elongation 1.67% (1/60) 8.34 0.003075 0.015839
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 1.67% (1/60) 8.34 0.003075 0.015839
GO:0045944 positive regulation of transcription by RNA polymerase II 1.67% (1/60) 8.34 0.003075 0.015839
GO:0044422 organelle part 6.67% (4/60) 2.63 0.003986 0.019363
GO:0044446 intracellular organelle part 6.67% (4/60) 2.63 0.003986 0.019363
GO:0006139 nucleobase-containing compound metabolic process 10.0% (6/60) 1.98 0.004154 0.019615
GO:0045893 positive regulation of transcription, DNA-templated 1.67% (1/60) 7.34 0.00614 0.023722
GO:1902680 positive regulation of RNA biosynthetic process 1.67% (1/60) 7.34 0.00614 0.023722
GO:0006354 DNA-templated transcription, elongation 1.67% (1/60) 7.34 0.00614 0.023722
GO:0016593 Cdc73/Paf1 complex 1.67% (1/60) 7.34 0.00614 0.023722
GO:1903508 positive regulation of nucleic acid-templated transcription 1.67% (1/60) 7.34 0.00614 0.023722
GO:0006368 transcription elongation from RNA polymerase II promoter 1.67% (1/60) 7.34 0.00614 0.023722
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 1.67% (1/60) 7.34 0.00614 0.023722
GO:0051254 positive regulation of RNA metabolic process 1.67% (1/60) 7.34 0.00614 0.023722
GO:0016043 cellular component organization 6.67% (4/60) 2.42 0.006653 0.024589
GO:0006725 cellular aromatic compound metabolic process 10.0% (6/60) 1.82 0.006838 0.024733
GO:0046483 heterocycle metabolic process 10.0% (6/60) 1.84 0.006578 0.02485
GO:1901360 organic cyclic compound metabolic process 10.0% (6/60) 1.8 0.007473 0.026468
GO:0008023 transcription elongation factor complex 1.67% (1/60) 7.02 0.007669 0.026607
GO:0034654 nucleobase-containing compound biosynthetic process 5.0% (3/60) 2.87 0.008145 0.027694
GO:0071840 cellular component organization or biogenesis 6.67% (4/60) 2.31 0.008796 0.02932
GO:0006383 transcription by RNA polymerase III 1.67% (1/60) 6.76 0.009196 0.030064
GO:0010557 positive regulation of macromolecule biosynthetic process 1.67% (1/60) 6.34 0.012243 0.034119
GO:0004674 protein serine/threonine kinase activity 1.67% (1/60) 6.34 0.012243 0.034119
GO:0009891 positive regulation of biosynthetic process 1.67% (1/60) 6.34 0.012243 0.034119
GO:0010604 positive regulation of macromolecule metabolic process 1.67% (1/60) 6.34 0.012243 0.034119
GO:0010628 positive regulation of gene expression 1.67% (1/60) 6.34 0.012243 0.034119
GO:0031325 positive regulation of cellular metabolic process 1.67% (1/60) 6.34 0.012243 0.034119
GO:0031328 positive regulation of cellular biosynthetic process 1.67% (1/60) 6.34 0.012243 0.034119
GO:0051173 positive regulation of nitrogen compound metabolic process 1.67% (1/60) 6.34 0.012243 0.034119
GO:0009893 positive regulation of metabolic process 1.67% (1/60) 6.34 0.012243 0.034119
GO:0019438 aromatic compound biosynthetic process 5.0% (3/60) 2.52 0.015463 0.041074
GO:0018130 heterocycle biosynthetic process 5.0% (3/60) 2.53 0.015343 0.041401
GO:0003723 RNA binding 5.0% (3/60) 2.53 0.015223 0.04174
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_21 0.042 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_47 0.023 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_48 0.026 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_61 0.042 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_77 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_84 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_93 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_103 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_157 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_197 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_202 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_215 0.018 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_31 0.023 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_45 0.021 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_194 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_10 0.042 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_99 0.02 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_120 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_2 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_13 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_26 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_28 0.043 Gene family Compare
Oryza sativa HCCA cluster Cluster_65 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_67 0.027 Gene family Compare
Oryza sativa HCCA cluster Cluster_173 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_182 0.053 Gene family Compare
Oryza sativa HCCA cluster Cluster_205 0.025 Gene family Compare
Oryza sativa HCCA cluster Cluster_276 0.022 Gene family Compare
Oryza sativa HCCA cluster Cluster_284 0.027 Gene family Compare
Oryza sativa HCCA cluster Cluster_311 0.023 Gene family Compare
Picea abies HCCA cluster Cluster_73 0.029 Gene family Compare
Picea abies HCCA cluster Cluster_175 0.023 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_55 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_91 0.027 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_102 0.036 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_138 0.038 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_181 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_59 0.02 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_121 0.086 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_127 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_176 0.029 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_211 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_254 0.103 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_309 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_39 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_85 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_91 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_101 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_107 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_149 0.046 Gene family Compare
Vitis vinifera HCCA cluster Cluster_193 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_206 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_15 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_137 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_272 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_346 0.03 Gene family Compare
Sequences (60) (download table)

InterPro Domains

GO Terms

Family Terms