Coexpression cluster: Cluster_140 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009536 plastid 97.1% (67/69) 2.79 0.0 0.0
GO:0044435 plastid part 73.91% (51/69) 4.02 0.0 0.0
GO:0044434 chloroplast part 71.01% (49/69) 4.01 0.0 0.0
GO:0009507 chloroplast 97.1% (67/69) 2.82 0.0 0.0
GO:0019682 glyceraldehyde-3-phosphate metabolic process 49.28% (34/69) 5.36 0.0 0.0
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 44.93% (31/69) 5.75 0.0 0.0
GO:0009240 isopentenyl diphosphate biosynthetic process 44.93% (31/69) 5.73 0.0 0.0
GO:0046490 isopentenyl diphosphate metabolic process 44.93% (31/69) 5.73 0.0 0.0
GO:0009532 plastid stroma 55.07% (38/69) 4.68 0.0 0.0
GO:0009570 chloroplast stroma 55.07% (38/69) 4.68 0.0 0.0
GO:0006081 cellular aldehyde metabolic process 50.72% (35/69) 5.03 0.0 0.0
GO:0008654 phospholipid biosynthetic process 46.38% (32/69) 5.04 0.0 0.0
GO:0006644 phospholipid metabolic process 46.38% (32/69) 4.96 0.0 0.0
GO:0006090 pyruvate metabolic process 44.93% (31/69) 4.89 0.0 0.0
GO:0044446 intracellular organelle part 73.91% (51/69) 2.7 0.0 0.0
GO:0044422 organelle part 73.91% (51/69) 2.7 0.0 0.0
GO:0044249 cellular biosynthetic process 75.36% (52/69) 2.51 0.0 0.0
GO:0051186 cofactor metabolic process 49.28% (34/69) 3.87 0.0 0.0
GO:0008610 lipid biosynthetic process 49.28% (34/69) 3.78 0.0 0.0
GO:1901135 carbohydrate derivative metabolic process 50.72% (35/69) 3.66 0.0 0.0
GO:0019637 organophosphate metabolic process 50.72% (35/69) 3.6 0.0 0.0
GO:0044255 cellular lipid metabolic process 50.72% (35/69) 3.58 0.0 0.0
GO:1901576 organic substance biosynthetic process 75.36% (52/69) 2.38 0.0 0.0
GO:0006082 organic acid metabolic process 59.42% (41/69) 3.08 0.0 0.0
GO:0043436 oxoacid metabolic process 59.42% (41/69) 3.08 0.0 0.0
GO:0019752 carboxylic acid metabolic process 57.97% (40/69) 3.12 0.0 0.0
GO:0009058 biosynthetic process 75.36% (52/69) 2.34 0.0 0.0
GO:0090407 organophosphate biosynthetic process 46.38% (32/69) 3.8 0.0 0.0
GO:0046148 pigment biosynthetic process 31.88% (22/69) 5.18 0.0 0.0
GO:0044444 cytoplasmic part 97.1% (67/69) 1.44 0.0 0.0
GO:0006629 lipid metabolic process 50.72% (35/69) 3.35 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 66.67% (46/69) 2.51 0.0 0.0
GO:0032787 monocarboxylic acid metabolic process 49.28% (34/69) 3.37 0.0 0.0
GO:0042440 pigment metabolic process 31.88% (22/69) 4.85 0.0 0.0
GO:0044237 cellular metabolic process 86.96% (60/69) 1.75 0.0 0.0
GO:0044281 small molecule metabolic process 60.87% (42/69) 2.62 0.0 0.0
GO:0006779 porphyrin-containing compound biosynthetic process 24.64% (17/69) 5.64 0.0 0.0
GO:0033014 tetrapyrrole biosynthetic process 24.64% (17/69) 5.6 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 49.28% (34/69) 3.11 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 63.77% (44/69) 2.39 0.0 0.0
GO:0009987 cellular process 92.75% (64/69) 1.39 0.0 0.0
GO:0008152 metabolic process 86.96% (60/69) 1.58 0.0 0.0
GO:0010027 thylakoid membrane organization 26.09% (18/69) 5.17 0.0 0.0
GO:0009668 plastid membrane organization 26.09% (18/69) 5.17 0.0 0.0
GO:0046483 heterocycle metabolic process 60.87% (42/69) 2.46 0.0 0.0
GO:0006796 phosphate-containing compound metabolic process 50.72% (35/69) 2.93 0.0 0.0
GO:0071704 organic substance metabolic process 84.06% (58/69) 1.65 0.0 0.0
GO:0006793 phosphorus metabolic process 50.72% (35/69) 2.91 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 63.77% (44/69) 2.32 0.0 0.0
GO:0061024 membrane organization 26.09% (18/69) 5.08 0.0 0.0
GO:0015995 chlorophyll biosynthetic process 21.74% (15/69) 5.76 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 44.93% (31/69) 3.13 0.0 0.0
GO:0006778 porphyrin-containing compound metabolic process 24.64% (17/69) 5.08 0.0 0.0
GO:0033013 tetrapyrrole metabolic process 24.64% (17/69) 5.06 0.0 0.0
GO:0044238 primary metabolic process 78.26% (54/69) 1.72 0.0 0.0
GO:0006807 nitrogen compound metabolic process 72.46% (50/69) 1.89 0.0 0.0
GO:0016070 RNA metabolic process 43.48% (30/69) 3.1 0.0 0.0
GO:0034660 ncRNA metabolic process 27.54% (19/69) 4.44 0.0 0.0
GO:0006790 sulfur compound metabolic process 33.33% (23/69) 3.7 0.0 0.0
GO:0009941 chloroplast envelope 30.43% (21/69) 3.96 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 42.03% (29/69) 3.02 0.0 0.0
GO:0009526 plastid envelope 30.43% (21/69) 3.95 0.0 0.0
GO:0015994 chlorophyll metabolic process 21.74% (15/69) 5.12 0.0 0.0
GO:0071840 cellular component organization or biogenesis 55.07% (38/69) 2.33 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 52.17% (36/69) 2.44 0.0 0.0
GO:0031975 envelope 30.43% (21/69) 3.79 0.0 0.0
GO:0031967 organelle envelope 30.43% (21/69) 3.79 0.0 0.0
GO:0009579 thylakoid 24.64% (17/69) 4.37 0.0 0.0
GO:1901362 organic cyclic compound biosynthetic process 42.03% (29/69) 2.8 0.0 0.0
GO:0016109 tetraterpenoid biosynthetic process 17.39% (12/69) 5.56 0.0 0.0
GO:0016117 carotenoid biosynthetic process 17.39% (12/69) 5.56 0.0 0.0
GO:0051667 establishment of plastid localization 17.39% (12/69) 5.52 0.0 0.0
GO:0009902 chloroplast relocation 17.39% (12/69) 5.52 0.0 0.0
GO:0009073 aromatic amino acid family biosynthetic process 17.39% (12/69) 5.52 0.0 0.0
GO:0051644 plastid localization 17.39% (12/69) 5.5 0.0 0.0
GO:0019750 chloroplast localization 17.39% (12/69) 5.5 0.0 0.0
GO:0016108 tetraterpenoid metabolic process 17.39% (12/69) 5.49 0.0 0.0
GO:0016116 carotenoid metabolic process 17.39% (12/69) 5.49 0.0 0.0
GO:0022607 cellular component assembly 30.43% (21/69) 3.52 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 59.42% (41/69) 1.97 0.0 0.0
GO:0051656 establishment of organelle localization 17.39% (12/69) 5.48 0.0 0.0
GO:0090304 nucleic acid metabolic process 43.48% (30/69) 2.57 0.0 0.0
GO:0018130 heterocycle biosynthetic process 34.78% (24/69) 3.04 0.0 0.0
GO:0006098 pentose-phosphate shunt 18.84% (13/69) 4.87 0.0 0.0
GO:0009658 chloroplast organization 20.29% (14/69) 4.56 0.0 0.0
GO:0051156 glucose 6-phosphate metabolic process 18.84% (13/69) 4.83 0.0 0.0
GO:0009072 aromatic amino acid family metabolic process 20.29% (14/69) 4.53 0.0 0.0
GO:0016226 iron-sulfur cluster assembly 15.94% (11/69) 5.46 0.0 0.0
GO:0031163 metallo-sulfur cluster assembly 15.94% (11/69) 5.46 0.0 0.0
GO:0006739 NADP metabolic process 18.84% (13/69) 4.79 0.0 0.0
GO:0016043 cellular component organization 47.83% (33/69) 2.23 0.0 0.0
GO:0006733 oxidoreduction coenzyme metabolic process 23.19% (16/69) 3.9 0.0 0.0
GO:0051188 cofactor biosynthetic process 24.64% (17/69) 3.68 0.0 0.0
GO:0045893 positive regulation of transcription, DNA-templated 23.19% (16/69) 3.81 0.0 0.0
GO:1902680 positive regulation of RNA biosynthetic process 23.19% (16/69) 3.81 0.0 0.0
GO:0051254 positive regulation of RNA metabolic process 23.19% (16/69) 3.81 0.0 0.0
GO:1903508 positive regulation of nucleic acid-templated transcription 23.19% (16/69) 3.81 0.0 0.0
GO:0008299 isoprenoid biosynthetic process 20.29% (14/69) 4.23 0.0 0.0
GO:0051640 organelle localization 17.39% (12/69) 4.75 0.0 0.0
GO:0009657 plastid organization 20.29% (14/69) 4.19 0.0 0.0
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 23.19% (16/69) 3.77 0.0 0.0
GO:0044436 thylakoid part 21.74% (15/69) 3.97 0.0 0.0
GO:0010628 positive regulation of gene expression 23.19% (16/69) 3.74 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 20.29% (14/69) 4.14 0.0 0.0
GO:0010557 positive regulation of macromolecule biosynthetic process 23.19% (16/69) 3.73 0.0 0.0
GO:0055035 plastid thylakoid membrane 20.29% (14/69) 4.13 0.0 0.0
GO:0006655 phosphatidylglycerol biosynthetic process 13.04% (9/69) 5.83 0.0 0.0
GO:0046471 phosphatidylglycerol metabolic process 13.04% (9/69) 5.8 0.0 0.0
GO:0031328 positive regulation of cellular biosynthetic process 23.19% (16/69) 3.71 0.0 0.0
GO:0006720 isoprenoid metabolic process 20.29% (14/69) 4.11 0.0 0.0
GO:0051173 positive regulation of nitrogen compound metabolic process 23.19% (16/69) 3.68 0.0 0.0
GO:0034357 photosynthetic membrane 20.29% (14/69) 4.08 0.0 0.0
GO:0042651 thylakoid membrane 20.29% (14/69) 4.08 0.0 0.0
GO:0016114 terpenoid biosynthetic process 18.84% (13/69) 4.32 0.0 0.0
GO:0010604 positive regulation of macromolecule metabolic process 23.19% (16/69) 3.66 0.0 0.0
GO:0031325 positive regulation of cellular metabolic process 23.19% (16/69) 3.64 0.0 0.0
GO:0006721 terpenoid metabolic process 18.84% (13/69) 4.18 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 31.88% (22/69) 2.77 0.0 0.0
GO:0008652 cellular amino acid biosynthetic process 21.74% (15/69) 3.72 0.0 0.0
GO:0009059 macromolecule biosynthetic process 33.33% (23/69) 2.65 0.0 0.0
GO:0072524 pyridine-containing compound metabolic process 20.29% (14/69) 3.86 0.0 0.0
GO:0006732 coenzyme metabolic process 23.19% (16/69) 3.45 0.0 0.0
GO:0009891 positive regulation of biosynthetic process 23.19% (16/69) 3.44 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 97.1% (67/69) 0.66 0.0 0.0
GO:0043227 membrane-bounded organelle 97.1% (67/69) 0.66 0.0 0.0
GO:0009893 positive regulation of metabolic process 23.19% (16/69) 3.35 0.0 0.0
GO:0043229 intracellular organelle 97.1% (67/69) 0.64 0.0 0.0
GO:0046394 carboxylic acid biosynthetic process 28.99% (20/69) 2.77 0.0 0.0
GO:0016053 organic acid biosynthetic process 28.99% (20/69) 2.77 0.0 0.0
GO:0043226 organelle 97.1% (67/69) 0.64 0.0 0.0
GO:0043170 macromolecule metabolic process 53.62% (37/69) 1.64 0.0 0.0
GO:0006520 cellular amino acid metabolic process 23.19% (16/69) 3.25 0.0 0.0
GO:0046496 nicotinamide nucleotide metabolic process 18.84% (13/69) 3.8 0.0 0.0
GO:0019362 pyridine nucleotide metabolic process 18.84% (13/69) 3.78 0.0 0.0
GO:0006364 rRNA processing 15.94% (11/69) 4.23 0.0 0.0
GO:0016072 rRNA metabolic process 15.94% (11/69) 4.2 0.0 0.0
GO:0009117 nucleotide metabolic process 23.19% (16/69) 3.08 0.0 0.0
GO:0006753 nucleoside phosphate metabolic process 23.19% (16/69) 3.08 0.0 0.0
GO:0009965 leaf morphogenesis 14.49% (10/69) 4.39 0.0 0.0
GO:0048522 positive regulation of cellular process 23.19% (16/69) 3.05 0.0 0.0
GO:0034470 ncRNA processing 15.94% (11/69) 4.03 0.0 0.0
GO:0044283 small molecule biosynthetic process 28.99% (20/69) 2.53 0.0 0.0
GO:0055086 nucleobase-containing small molecule metabolic process 23.19% (16/69) 2.94 0.0 0.0
GO:0051649 establishment of localization in cell 26.09% (18/69) 2.67 0.0 0.0
GO:0046474 glycerophospholipid biosynthetic process 13.04% (9/69) 4.35 0.0 0.0
GO:0006396 RNA processing 21.74% (15/69) 2.93 0.0 0.0
GO:0051641 cellular localization 26.09% (18/69) 2.54 0.0 0.0
GO:0006650 glycerophospholipid metabolic process 13.04% (9/69) 4.26 0.0 0.0
GO:0045017 glycerolipid biosynthetic process 13.04% (9/69) 4.23 0.0 0.0
GO:0006412 translation 15.94% (11/69) 3.58 0.0 0.0
GO:0009653 anatomical structure morphogenesis 24.64% (17/69) 2.58 0.0 0.0
GO:0043043 peptide biosynthetic process 15.94% (11/69) 3.56 0.0 0.0
GO:0044272 sulfur compound biosynthetic process 17.39% (12/69) 3.33 0.0 0.0
GO:0048518 positive regulation of biological process 23.19% (16/69) 2.68 0.0 0.0
GO:0090626 plant epidermis morphogenesis 11.59% (8/69) 4.5 0.0 0.0
GO:0010103 stomatal complex morphogenesis 11.59% (8/69) 4.5 0.0 0.0
GO:0046486 glycerolipid metabolic process 13.04% (9/69) 4.12 0.0 0.0
GO:0006518 peptide metabolic process 15.94% (11/69) 3.51 0.0 0.0
GO:0043933 protein-containing complex subunit organization 17.39% (12/69) 3.29 0.0 0.0
GO:0019693 ribose phosphate metabolic process 18.84% (13/69) 3.08 0.0 0.0
GO:1905392 plant organ morphogenesis 14.49% (10/69) 3.68 0.0 0.0
GO:0043604 amide biosynthetic process 15.94% (11/69) 3.42 0.0 0.0
GO:0003723 RNA binding 17.39% (12/69) 3.21 0.0 0.0
GO:0008150 biological_process 100.0% (69/69) 0.39 0.0 0.0
GO:0009069 serine family amino acid metabolic process 13.04% (9/69) 3.81 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 18.84% (13/69) 2.9 0.0 0.0
GO:0043228 non-membrane-bounded organelle 18.84% (13/69) 2.9 0.0 0.0
GO:0010207 photosystem II assembly 11.59% (8/69) 4.16 0.0 0.0
GO:0034622 cellular protein-containing complex assembly 15.94% (11/69) 3.26 0.0 0.0
GO:0006636 unsaturated fatty acid biosynthetic process 8.7% (6/69) 5.09 0.0 0.0
GO:0033559 unsaturated fatty acid metabolic process 8.7% (6/69) 5.09 0.0 0.0
GO:0072596 establishment of protein localization to chloroplast 8.7% (6/69) 5.07 0.0 0.0
GO:0045036 protein targeting to chloroplast 8.7% (6/69) 5.07 0.0 0.0
GO:0072598 protein localization to chloroplast 8.7% (6/69) 5.07 0.0 0.0
GO:0065003 protein-containing complex assembly 15.94% (11/69) 3.2 0.0 0.0
GO:0042793 plastid transcription 8.7% (6/69) 5.05 0.0 0.0
GO:1990904 ribonucleoprotein complex 15.94% (11/69) 3.13 0.0 0.0
GO:0044424 intracellular part 97.1% (67/69) 0.43 0.0 0.0
GO:0019344 cysteine biosynthetic process 11.59% (8/69) 3.95 0.0 0.0
GO:0006534 cysteine metabolic process 11.59% (8/69) 3.94 0.0 0.0
GO:0009070 serine family amino acid biosynthetic process 11.59% (8/69) 3.93 0.0 0.0
GO:0043603 cellular amide metabolic process 15.94% (11/69) 3.08 0.0 0.0
GO:0009295 nucleoid 7.25% (5/69) 5.37 0.0 1e-06
GO:0005840 ribosome 13.04% (9/69) 3.43 0.0 1e-06
GO:0000096 sulfur amino acid metabolic process 13.04% (9/69) 3.43 0.0 1e-06
GO:0042254 ribosome biogenesis 8.7% (6/69) 4.5 0.0 1e-06
GO:0003735 structural constituent of ribosome 13.04% (9/69) 3.31 0.0 1e-06
GO:0022613 ribonucleoprotein complex biogenesis 8.7% (6/69) 4.42 0.0 1e-06
GO:0016556 mRNA modification 8.7% (6/69) 4.37 0.0 2e-06
GO:0030154 cell differentiation 14.49% (10/69) 2.92 1e-06 3e-06
GO:1901605 alpha-amino acid metabolic process 14.49% (10/69) 2.91 1e-06 3e-06
GO:0000097 sulfur amino acid biosynthetic process 11.59% (8/69) 3.42 1e-06 3e-06
GO:0090698 post-embryonic plant morphogenesis 11.59% (8/69) 3.4 1e-06 3e-06
GO:0032774 RNA biosynthetic process 11.59% (8/69) 3.39 1e-06 3e-06
GO:0009534 chloroplast thylakoid 10.14% (7/69) 3.71 1e-06 4e-06
GO:0031976 plastid thylakoid 10.14% (7/69) 3.71 1e-06 4e-06
GO:0005982 starch metabolic process 10.14% (7/69) 3.62 2e-06 6e-06
GO:0032502 developmental process 34.78% (24/69) 1.46 2e-06 7e-06
GO:0005198 structural molecule activity 13.04% (9/69) 2.98 2e-06 7e-06
GO:0006633 fatty acid biosynthetic process 8.7% (6/69) 4.0 2e-06 7e-06
GO:0006996 organelle organization 20.29% (14/69) 2.12 3e-06 1.1e-05
GO:0044260 cellular macromolecule metabolic process 34.78% (24/69) 1.39 4e-06 1.4e-05
GO:1901607 alpha-amino acid biosynthetic process 11.59% (8/69) 3.07 5e-06 1.7e-05
GO:0080090 regulation of primary metabolic process 27.54% (19/69) 1.64 5e-06 1.8e-05
GO:1903506 regulation of nucleic acid-templated transcription 24.64% (17/69) 1.78 5e-06 1.8e-05
GO:2001141 regulation of RNA biosynthetic process 24.64% (17/69) 1.78 5e-06 1.8e-05
GO:0006355 regulation of transcription, DNA-templated 24.64% (17/69) 1.78 5e-06 1.8e-05
GO:0006351 transcription, DNA-templated 8.7% (6/69) 3.75 6e-06 1.9e-05
GO:0097659 nucleic acid-templated transcription 8.7% (6/69) 3.75 6e-06 1.9e-05
GO:0051252 regulation of RNA metabolic process 24.64% (17/69) 1.77 6e-06 2e-05
GO:0004853 uroporphyrinogen decarboxylase activity 2.9% (2/69) 8.63 6e-06 2e-05
GO:0019252 starch biosynthetic process 8.7% (6/69) 3.67 8e-06 2.5e-05
GO:0051171 regulation of nitrogen compound metabolic process 26.09% (18/69) 1.65 9e-06 2.9e-05
GO:0006631 fatty acid metabolic process 11.59% (8/69) 2.93 1e-05 3.2e-05
GO:2000112 regulation of cellular macromolecule biosynthetic process 24.64% (17/69) 1.69 1.2e-05 3.8e-05
GO:0010556 regulation of macromolecule biosynthetic process 24.64% (17/69) 1.69 1.2e-05 3.8e-05
GO:0019219 regulation of nucleobase-containing compound metabolic process 24.64% (17/69) 1.69 1.2e-05 3.9e-05
GO:0044464 cell part 97.1% (67/69) 0.3 1.4e-05 4.4e-05
GO:0008135 translation factor activity, RNA binding 7.25% (5/69) 4.02 1.4e-05 4.5e-05
GO:0031326 regulation of cellular biosynthetic process 24.64% (17/69) 1.66 1.6e-05 5e-05
GO:0032991 protein-containing complex 20.29% (14/69) 1.89 1.8e-05 5.5e-05
GO:0072330 monocarboxylic acid biosynthetic process 14.49% (10/69) 2.4 1.8e-05 5.5e-05
GO:0009451 RNA modification 10.14% (7/69) 3.1 1.8e-05 5.5e-05
GO:0051002 ligase activity, forming nitrogen-metal bonds 2.9% (2/69) 8.05 1.9e-05 5.7e-05
GO:0016851 magnesium chelatase activity 2.9% (2/69) 8.05 1.9e-05 5.7e-05
GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes 2.9% (2/69) 8.05 1.9e-05 5.7e-05
GO:0060255 regulation of macromolecule metabolic process 26.09% (18/69) 1.57 1.9e-05 5.8e-05
GO:0031323 regulation of cellular metabolic process 26.09% (18/69) 1.55 2.5e-05 7.4e-05
GO:0010468 regulation of gene expression 24.64% (17/69) 1.61 2.5e-05 7.5e-05
GO:0009889 regulation of biosynthetic process 24.64% (17/69) 1.59 3e-05 9e-05
GO:0019222 regulation of metabolic process 27.54% (19/69) 1.46 3.1e-05 9.2e-05
GO:0019684 photosynthesis, light reaction 7.25% (5/69) 3.74 3.7e-05 0.000108
GO:0010007 magnesium chelatase complex 2.9% (2/69) 7.63 3.7e-05 0.00011
GO:0000023 maltose metabolic process 7.25% (5/69) 3.71 4.2e-05 0.000122
GO:0044042 glucan metabolic process 10.14% (7/69) 2.9 4.3e-05 0.000124
GO:0006073 cellular glucan metabolic process 10.14% (7/69) 2.9 4.3e-05 0.000124
GO:0003746 translation elongation factor activity 4.35% (3/69) 5.41 4.8e-05 0.000138
GO:0009250 glucan biosynthetic process 8.7% (6/69) 3.08 7.9e-05 0.000226
GO:0044085 cellular component biogenesis 8.7% (6/69) 3.01 0.000101 0.000288
GO:0006766 vitamin metabolic process 5.8% (4/69) 4.02 0.000112 0.000318
GO:0005984 disaccharide metabolic process 7.25% (5/69) 3.36 0.000129 0.000365
GO:0031984 organelle subcompartment 10.14% (7/69) 2.61 0.00015 0.000424
GO:0009106 lipoate metabolic process 4.35% (3/69) 4.86 0.000152 0.000427
GO:0009735 response to cytokinin 7.25% (5/69) 3.31 0.000152 0.000427
GO:0016853 isomerase activity 7.25% (5/69) 3.25 0.000183 0.000509
GO:0009311 oligosaccharide metabolic process 7.25% (5/69) 3.24 0.000191 0.00053
GO:0051234 establishment of localization 26.09% (18/69) 1.3 0.000225 0.000624
GO:0016071 mRNA metabolic process 8.7% (6/69) 2.77 0.000251 0.00069
GO:0032544 plastid translation 2.9% (2/69) 6.31 0.000278 0.000762
GO:0006546 glycine catabolic process 4.35% (3/69) 4.52 0.00031 0.000846
GO:0002376 immune system process 11.59% (8/69) 2.2 0.000344 0.000935
GO:0042135 neurotransmitter catabolic process 4.35% (3/69) 4.46 0.000346 0.000935
GO:0009071 serine family amino acid catabolic process 4.35% (3/69) 4.46 0.000346 0.000935
GO:0009790 embryo development 10.14% (7/69) 2.4 0.000366 0.000977
GO:0009793 embryo development ending in seed dormancy 10.14% (7/69) 2.4 0.000366 0.000977
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 4.35% (3/69) 4.44 0.000366 0.000984
GO:0042737 drug catabolic process 5.8% (4/69) 3.52 0.000414 0.001101
GO:0006544 glycine metabolic process 4.35% (3/69) 4.36 0.000428 0.001133
GO:0016859 cis-trans isomerase activity 4.35% (3/69) 4.33 0.00045 0.001187
GO:0051179 localization 26.09% (18/69) 1.2 0.000524 0.001376
GO:0044264 cellular polysaccharide metabolic process 10.14% (7/69) 2.31 0.000531 0.001389
GO:0042133 neurotransmitter metabolic process 4.35% (3/69) 4.15 0.000654 0.001704
GO:0001505 regulation of neurotransmitter levels 4.35% (3/69) 4.11 0.000712 0.00185
GO:1901606 alpha-amino acid catabolic process 5.8% (4/69) 3.31 0.000722 0.001869
GO:0009063 cellular amino acid catabolic process 5.8% (4/69) 3.3 0.000739 0.001906
GO:0048869 cellular developmental process 14.49% (10/69) 1.74 0.000749 0.001922
GO:0003676 nucleic acid binding 20.29% (14/69) 1.38 0.000756 0.001934
GO:0009543 chloroplast thylakoid lumen 4.35% (3/69) 4.07 0.000774 0.001966
GO:0031978 plastid thylakoid lumen 4.35% (3/69) 4.07 0.000774 0.001966
GO:0034654 nucleobase-containing compound biosynthetic process 11.59% (8/69) 2.0 0.000847 0.002143
GO:0019748 secondary metabolic process 10.14% (7/69) 2.17 0.00091 0.002293
GO:0009508 plastid chromosome 2.9% (2/69) 5.46 0.000933 0.002334
GO:0000229 cytoplasmic chromosome 2.9% (2/69) 5.46 0.000933 0.002334
GO:0008266 poly(U) RNA binding 2.9% (2/69) 5.38 0.001041 0.002585
GO:0008187 poly-pyrimidine tract binding 2.9% (2/69) 5.38 0.001041 0.002585
GO:0044262 cellular carbohydrate metabolic process 10.14% (7/69) 2.12 0.001145 0.002835
GO:0072594 establishment of protein localization to organelle 8.7% (6/69) 2.35 0.001153 0.002843
GO:0033365 protein localization to organelle 8.7% (6/69) 2.34 0.001192 0.002928
GO:0033692 cellular polysaccharide biosynthetic process 8.7% (6/69) 2.33 0.001231 0.003013
GO:0005976 polysaccharide metabolic process 10.14% (7/69) 2.08 0.001297 0.003164
GO:0015979 photosynthesis 5.8% (4/69) 3.07 0.00134 0.003256
GO:0031408 oxylipin biosynthetic process 2.9% (2/69) 5.17 0.001399 0.003389
GO:0031977 thylakoid lumen 4.35% (3/69) 3.76 0.001442 0.00348
GO:0003674 molecular_function 89.86% (62/69) 0.26 0.0015 0.003608
GO:0006783 heme biosynthetic process 2.9% (2/69) 5.11 0.00153 0.003667
GO:0031407 oxylipin metabolic process 2.9% (2/69) 5.05 0.001666 0.00398
GO:0016143 S-glycoside metabolic process 5.8% (4/69) 2.97 0.001709 0.004039
GO:0019760 glucosinolate metabolic process 5.8% (4/69) 2.97 0.001709 0.004039
GO:0019757 glycosinolate metabolic process 5.8% (4/69) 2.97 0.001709 0.004039
GO:0034637 cellular carbohydrate biosynthetic process 8.7% (6/69) 2.23 0.001768 0.004149
GO:0044267 cellular protein metabolic process 18.84% (13/69) 1.32 0.001765 0.004157
GO:0042168 heme metabolic process 2.9% (2/69) 4.93 0.001956 0.004575
GO:0016020 membrane 31.88% (22/69) 0.89 0.002044 0.004766
GO:0004418 hydroxymethylbilane synthase activity 1.45% (1/69) 8.63 0.00252 0.005795
GO:0004366 glycerol-3-phosphate O-acyltransferase activity 1.45% (1/69) 8.63 0.00252 0.005795
GO:0050518 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity 1.45% (1/69) 8.63 0.00252 0.005795
GO:0051744 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity 1.45% (1/69) 8.63 0.00252 0.005795
GO:0010267 production of ta-siRNAs involved in RNA interference 4.35% (3/69) 3.42 0.002797 0.00641
GO:0000271 polysaccharide biosynthetic process 8.7% (6/69) 2.09 0.002898 0.00662
GO:1901657 glycosyl compound metabolic process 5.8% (4/69) 2.74 0.003092 0.00704
GO:0006414 translational elongation 2.9% (2/69) 4.59 0.003142 0.007129
GO:0035196 production of miRNAs involved in gene silencing by miRNA 4.35% (3/69) 3.22 0.004175 0.009442
GO:0017144 drug metabolic process 10.14% (7/69) 1.78 0.004192 0.00945
GO:0044282 small molecule catabolic process 8.7% (6/69) 1.97 0.004327 0.009722
GO:0009695 jasmonic acid biosynthetic process 4.35% (3/69) 3.17 0.004549 0.010188
GO:0042180 cellular ketone metabolic process 4.35% (3/69) 3.16 0.004646 0.01037
GO:0003727 single-stranded RNA binding 2.9% (2/69) 4.27 0.004816 0.010715
GO:0000313 organellar ribosome 1.45% (1/69) 7.63 0.005034 0.01088
GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity 1.45% (1/69) 7.63 0.005034 0.01088
GO:0080085 signal recognition particle, chloroplast targeting 1.45% (1/69) 7.63 0.005034 0.01088
GO:0009547 plastid ribosome 1.45% (1/69) 7.63 0.005034 0.01088
GO:0051084 'de novo' posttranslational protein folding 1.45% (1/69) 7.63 0.005034 0.01088
GO:0006458 'de novo' protein folding 1.45% (1/69) 7.63 0.005034 0.01088
GO:0016869 intramolecular transferase activity, transferring amino groups 1.45% (1/69) 7.63 0.005034 0.01088
GO:0051085 chaperone cofactor-dependent protein refolding 1.45% (1/69) 7.63 0.005034 0.01088
GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity 1.45% (1/69) 7.63 0.005034 0.01088
GO:0005694 chromosome 2.9% (2/69) 4.21 0.005286 0.01139
GO:0030422 production of siRNA involved in RNA interference 4.35% (3/69) 3.09 0.005358 0.011507
GO:1901363 heterocyclic compound binding 21.74% (15/69) 1.02 0.005638 0.012071
GO:0070918 production of small RNA involved in gene silencing by RNA 4.35% (3/69) 3.06 0.005682 0.012089
GO:0031050 dsRNA fragmentation 4.35% (3/69) 3.06 0.005682 0.012089
GO:0065007 biological regulation 33.33% (23/69) 0.75 0.005741 0.012178
GO:0097159 organic cyclic compound binding 21.74% (15/69) 1.01 0.005983 0.012651
GO:0006457 protein folding 5.8% (4/69) 2.45 0.006212 0.013095
GO:0019216 regulation of lipid metabolic process 2.9% (2/69) 4.08 0.006288 0.013214
GO:0051607 defense response to virus 4.35% (3/69) 3.0 0.006364 0.013334
GO:0007275 multicellular organism development 10.14% (7/69) 1.67 0.006389 0.013345
GO:0000272 polysaccharide catabolic process 2.9% (2/69) 4.05 0.00655 0.013598
GO:0042335 cuticle development 2.9% (2/69) 4.05 0.00655 0.013598
GO:0048481 plant ovule development 4.35% (3/69) 2.98 0.006602 0.013664
GO:0009694 jasmonic acid metabolic process 4.35% (3/69) 2.94 0.007094 0.014638
GO:0006091 generation of precursor metabolites and energy 7.25% (5/69) 2.05 0.007264 0.014945
GO:0030385 ferredoxin:thioredoxin reductase activity 1.45% (1/69) 7.05 0.007541 0.015374
GO:0010275 NAD(P)H dehydrogenase complex assembly 1.45% (1/69) 7.05 0.007541 0.015374
GO:0080183 response to photooxidative stress 1.45% (1/69) 7.05 0.007541 0.015374
GO:0000038 very long-chain fatty acid metabolic process 2.9% (2/69) 3.9 0.007938 0.016135
GO:0016874 ligase activity 4.35% (3/69) 2.85 0.008416 0.017057
GO:0098542 defense response to other organism 10.14% (7/69) 1.58 0.008899 0.017982
GO:0019761 glucosinolate biosynthetic process 4.35% (3/69) 2.82 0.008983 0.017992
GO:0019758 glycosinolate biosynthetic process 4.35% (3/69) 2.82 0.008983 0.017992
GO:0016144 S-glycoside biosynthetic process 4.35% (3/69) 2.82 0.008983 0.017992
GO:0050794 regulation of cellular process 26.09% (18/69) 0.83 0.009365 0.018702
GO:0016831 carboxy-lyase activity 2.9% (2/69) 3.77 0.009445 0.018808
GO:0048046 apoplast 5.8% (4/69) 2.27 0.009491 0.018845
GO:0050789 regulation of biological process 28.99% (20/69) 0.76 0.009846 0.019492
GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors 1.45% (1/69) 6.63 0.010042 0.019709
GO:0009539 photosystem II reaction center 1.45% (1/69) 6.63 0.010042 0.019709
GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition 1.45% (1/69) 6.63 0.010042 0.019709
GO:1901659 glycosyl compound biosynthetic process 4.35% (3/69) 2.74 0.010338 0.020175
GO:0009615 response to virus 4.35% (3/69) 2.74 0.010338 0.020175
GO:0042446 hormone biosynthetic process 8.7% (6/69) 1.7 0.010501 0.020433
GO:0009108 coenzyme biosynthetic process 5.8% (4/69) 2.22 0.010723 0.020806
GO:1901615 organic hydroxy compound metabolic process 8.7% (6/69) 1.68 0.010967 0.021219
GO:0006605 protein targeting 8.7% (6/69) 1.68 0.011171 0.021553
GO:0045087 innate immune response 7.25% (5/69) 1.89 0.011269 0.021681
GO:0006955 immune response 7.25% (5/69) 1.87 0.011781 0.022603
GO:0008312 7S RNA binding 1.45% (1/69) 6.31 0.012537 0.023786
GO:0043489 RNA stabilization 1.45% (1/69) 6.31 0.012537 0.023786
GO:0061077 chaperone-mediated protein folding 1.45% (1/69) 6.31 0.012537 0.023786
GO:1902369 negative regulation of RNA catabolic process 1.45% (1/69) 6.31 0.012537 0.023786
GO:0009814 defense response, incompatible interaction 5.8% (4/69) 2.13 0.013363 0.025282
GO:0005048 signal sequence binding 1.45% (1/69) 6.05 0.015026 0.028117
GO:0043487 regulation of RNA stability 1.45% (1/69) 6.05 0.015026 0.028117
GO:0016987 sigma factor activity 1.45% (1/69) 6.05 0.015026 0.028117
GO:0045038 protein import into chloroplast thylakoid membrane 1.45% (1/69) 6.05 0.015026 0.028117
GO:0006952 defense response 11.59% (8/69) 1.3 0.015572 0.029059
GO:0042445 hormone metabolic process 8.7% (6/69) 1.56 0.016286 0.030308
GO:0046395 carboxylic acid catabolic process 5.8% (4/69) 2.04 0.016385 0.030328
GO:0016054 organic acid catabolic process 5.8% (4/69) 2.04 0.016385 0.030328
GO:0016553 base conversion or substitution editing 1.45% (1/69) 5.83 0.017508 0.03232
GO:0016051 carbohydrate biosynthetic process 8.7% (6/69) 1.53 0.017854 0.032869
GO:0034613 cellular protein localization 8.7% (6/69) 1.52 0.018432 0.033841
GO:0031330 negative regulation of cellular catabolic process 1.45% (1/69) 5.63 0.019985 0.036206
GO:0048564 photosystem I assembly 1.45% (1/69) 5.63 0.019985 0.036206
GO:0009533 chloroplast stromal thylakoid 1.45% (1/69) 5.63 0.019985 0.036206
GO:0010190 cytochrome b6f complex assembly 1.45% (1/69) 5.63 0.019985 0.036206
GO:0019538 protein metabolic process 18.84% (13/69) 0.9 0.019804 0.036262
GO:0070727 cellular macromolecule localization 8.7% (6/69) 1.45 0.02217 0.040059
GO:0042819 vitamin B6 biosynthetic process 1.45% (1/69) 5.46 0.022455 0.040149
GO:0000304 response to singlet oxygen 1.45% (1/69) 5.46 0.022455 0.040149
GO:0042816 vitamin B6 metabolic process 1.45% (1/69) 5.46 0.022455 0.040149
GO:0009895 negative regulation of catabolic process 1.45% (1/69) 5.46 0.022455 0.040149
GO:0016830 carbon-carbon lyase activity 2.9% (2/69) 3.08 0.023568 0.042029
GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione 2.9% (2/69) 3.06 0.024036 0.04253
GO:0006089 lactate metabolic process 2.9% (2/69) 3.06 0.024036 0.04253
GO:0061727 methylglyoxal catabolic process to lactate 2.9% (2/69) 3.06 0.024036 0.04253
GO:0051596 methylglyoxal catabolic process 2.9% (2/69) 3.05 0.024508 0.043031
GO:0009438 methylglyoxal metabolic process 2.9% (2/69) 3.05 0.024508 0.043031
GO:0042182 ketone catabolic process 2.9% (2/69) 3.05 0.024508 0.043031
GO:0005786 signal recognition particle, endoplasmic reticulum targeting 1.45% (1/69) 5.31 0.024919 0.043529
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor 1.45% (1/69) 5.31 0.024919 0.043529
GO:0046185 aldehyde catabolic process 2.9% (2/69) 3.03 0.024984 0.043531
GO:0010218 response to far red light 2.9% (2/69) 3.0 0.025947 0.044866
GO:1901575 organic substance catabolic process 11.59% (8/69) 1.16 0.025905 0.044906
GO:0009056 catabolic process 13.04% (9/69) 1.07 0.026057 0.044941
GO:0006886 intracellular protein transport 8.7% (6/69) 1.4 0.0259 0.045012
GO:0003747 translation release factor activity 1.45% (1/69) 5.17 0.027377 0.04663
GO:0008079 translation termination factor activity 1.45% (1/69) 5.17 0.027377 0.04663
GO:0042646 plastid nucleoid 1.45% (1/69) 5.17 0.027377 0.04663
GO:0048500 signal recognition particle 1.45% (1/69) 5.17 0.027377 0.04663
GO:0006415 translational termination 1.45% (1/69) 5.17 0.027377 0.04663
GO:0010114 response to red light 2.9% (2/69) 2.93 0.02842 0.048285
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_182 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_214 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_265 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_47 0.024 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_71 0.021 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_85 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_8 0.102 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_9 0.049 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_84 0.04 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_87 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.048 Gene family Compare
Oryza sativa HCCA cluster Cluster_8 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_21 0.048 Gene family Compare
Oryza sativa HCCA cluster Cluster_80 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_153 0.023 Gene family Compare
Oryza sativa HCCA cluster Cluster_170 0.189 Gene family Compare
Oryza sativa HCCA cluster Cluster_226 0.038 Gene family Compare
Oryza sativa HCCA cluster Cluster_288 0.028 Gene family Compare
Oryza sativa HCCA cluster Cluster_299 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_302 0.026 Gene family Compare
Oryza sativa HCCA cluster Cluster_325 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_186 0.052 Gene family Compare
Picea abies HCCA cluster Cluster_205 0.041 Gene family Compare
Picea abies HCCA cluster Cluster_332 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_373 0.026 Gene family Compare
Picea abies HCCA cluster Cluster_427 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_456 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_476 0.054 Gene family Compare
Picea abies HCCA cluster Cluster_478 0.024 Gene family Compare
Picea abies HCCA cluster Cluster_492 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_11 0.043 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_43 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_165 0.034 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_167 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_203 0.026 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_48 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.052 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_141 0.046 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_145 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_149 0.064 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_165 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_183 0.03 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_234 0.119 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_291 0.043 Gene family Compare
Vitis vinifera HCCA cluster Cluster_2 0.037 Gene family Compare
Vitis vinifera HCCA cluster Cluster_55 0.06 Gene family Compare
Vitis vinifera HCCA cluster Cluster_81 0.027 Gene family Compare
Vitis vinifera HCCA cluster Cluster_95 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_120 0.111 Gene family Compare
Vitis vinifera HCCA cluster Cluster_148 0.029 Gene family Compare
Vitis vinifera HCCA cluster Cluster_203 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_211 0.025 Gene family Compare
Zea mays HCCA cluster Cluster_45 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_53 0.031 Gene family Compare
Zea mays HCCA cluster Cluster_69 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_70 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_75 0.082 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_143 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_163 0.098 Gene family Compare
Zea mays HCCA cluster Cluster_176 0.031 Gene family Compare
Zea mays HCCA cluster Cluster_209 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_246 0.023 Gene family Compare
Zea mays HCCA cluster Cluster_258 0.087 Gene family Compare
Zea mays HCCA cluster Cluster_297 0.028 Gene family Compare
Zea mays HCCA cluster Cluster_313 0.059 Gene family Compare
Sequences (69) (download table)

InterPro Domains

GO Terms

Family Terms