Coexpression cluster: Cluster_12 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044436 thylakoid part 5.69% (7/123) 5.03 0.0 0.0
GO:0009521 photosystem 4.88% (6/123) 5.04 0.0 3e-06
GO:0048038 quinone binding 3.25% (4/123) 6.16 0.0 1.1e-05
GO:0044425 membrane part 13.01% (16/123) 2.29 0.0 1.2e-05
GO:0009522 photosystem I 3.25% (4/123) 5.84 1e-06 2e-05
GO:0022900 electron transport chain 3.25% (4/123) 5.84 1e-06 2e-05
GO:0016651 oxidoreductase activity, acting on NAD(P)H 3.25% (4/123) 5.66 1e-06 2.3e-05
GO:0009579 thylakoid 2.44% (3/123) 7.01 1e-06 2.5e-05
GO:0015979 photosynthesis 4.07% (5/123) 4.82 1e-06 2.6e-05
GO:0016021 integral component of membrane 10.57% (13/123) 2.32 2e-06 3.9e-05
GO:0019684 photosynthesis, light reaction 2.44% (3/123) 6.74 2e-06 4e-05
GO:0031224 intrinsic component of membrane 10.57% (13/123) 2.3 3e-06 4.4e-05
GO:0098796 membrane protein complex 5.69% (7/123) 3.47 3e-06 4.6e-05
GO:0009767 photosynthetic electron transport chain 2.44% (3/123) 6.52 3e-06 4.9e-05
GO:0017004 cytochrome complex assembly 2.44% (3/123) 6.52 3e-06 4.9e-05
GO:0006091 generation of precursor metabolites and energy 4.07% (5/123) 4.34 5e-06 6.2e-05
GO:0051287 NAD binding 3.25% (4/123) 4.84 1.1e-05 0.000119
GO:0005575 cellular_component 21.14% (26/123) 1.32 1.1e-05 0.000123
GO:0044424 intracellular part 13.01% (16/123) 1.83 1.1e-05 0.000126
GO:0044464 cell part 13.01% (16/123) 1.75 2.2e-05 0.000225
GO:0032991 protein-containing complex 9.76% (12/123) 2.06 3.3e-05 0.000317
GO:0009772 photosynthetic electron transport in photosystem II 1.63% (2/123) 7.16 6.5e-05 0.000565
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 1.63% (2/123) 7.16 6.5e-05 0.000565
GO:0034641 cellular nitrogen compound metabolic process 10.57% (13/123) 1.78 0.000109 0.000914
GO:0044271 cellular nitrogen compound biosynthetic process 7.32% (9/123) 2.15 0.00021 0.001691
GO:0006397 mRNA processing 2.44% (3/123) 4.52 0.000299 0.002309
GO:0015002 heme-copper terminal oxidase activity 1.63% (2/123) 6.16 0.00032 0.002385
GO:0044237 cellular metabolic process 18.7% (23/123) 1.06 0.00054 0.003746
GO:0016071 mRNA metabolic process 2.44% (3/123) 4.24 0.000535 0.003838
GO:0044444 cytoplasmic part 6.5% (8/123) 2.09 0.000614 0.004113
GO:0006139 nucleobase-containing compound metabolic process 7.32% (9/123) 1.84 0.00097 0.005418
GO:0009987 cellular process 21.14% (26/123) 0.92 0.000964 0.005539
GO:0009055 electron transfer activity 3.25% (4/123) 3.2 0.000959 0.005667
GO:0005739 mitochondrion 1.63% (2/123) 5.42 0.000949 0.005782
GO:0009536 plastid 1.63% (2/123) 5.42 0.000949 0.005782
GO:0009507 chloroplast 1.63% (2/123) 5.42 0.000949 0.005782
GO:0034622 cellular protein-containing complex assembly 2.44% (3/123) 3.9 0.001069 0.005809
GO:0065003 protein-containing complex assembly 2.44% (3/123) 3.71 0.001564 0.008061
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.44% (3/123) 3.71 0.001564 0.008061
GO:0034654 nucleobase-containing compound biosynthetic process 4.07% (5/123) 2.54 0.001749 0.008789
GO:0009199 ribonucleoside triphosphate metabolic process 2.44% (3/123) 3.52 0.002298 0.009058
GO:0009205 purine ribonucleoside triphosphate metabolic process 2.44% (3/123) 3.52 0.002298 0.009058
GO:0009144 purine nucleoside triphosphate metabolic process 2.44% (3/123) 3.52 0.002298 0.009058
GO:0046034 ATP metabolic process 2.44% (3/123) 3.55 0.002182 0.009139
GO:1902600 proton transmembrane transport 2.44% (3/123) 3.49 0.002418 0.009169
GO:0043933 protein-containing complex subunit organization 2.44% (3/123) 3.49 0.002418 0.009169
GO:0009161 ribonucleoside monophosphate metabolic process 2.44% (3/123) 3.45 0.002668 0.009246
GO:0009123 nucleoside monophosphate metabolic process 2.44% (3/123) 3.45 0.002668 0.009246
GO:0009126 purine nucleoside monophosphate metabolic process 2.44% (3/123) 3.45 0.002668 0.009246
GO:0009167 purine ribonucleoside monophosphate metabolic process 2.44% (3/123) 3.45 0.002668 0.009246
GO:1901360 organic cyclic compound metabolic process 7.32% (9/123) 1.64 0.002501 0.00931
GO:0015985 energy coupled proton transport, down electrochemical gradient 1.63% (2/123) 4.84 0.002182 0.00933
GO:0015986 ATP synthesis coupled proton transport 1.63% (2/123) 4.84 0.002182 0.00933
GO:0034062 5'-3' RNA polymerase activity 2.44% (3/123) 3.57 0.00207 0.009458
GO:0097747 RNA polymerase activity 2.44% (3/123) 3.57 0.00207 0.009458
GO:0034645 cellular macromolecule biosynthetic process 5.69% (7/123) 1.98 0.002119 0.009463
GO:0009141 nucleoside triphosphate metabolic process 2.44% (3/123) 3.42 0.002799 0.009535
GO:0043229 intracellular organelle 6.5% (8/123) 1.74 0.002894 0.009537
GO:0043226 organelle 6.5% (8/123) 1.74 0.002894 0.009537
GO:0006725 cellular aromatic compound metabolic process 7.32% (9/123) 1.69 0.002029 0.009708
GO:0046483 heterocycle metabolic process 7.32% (9/123) 1.69 0.002006 0.009834
GO:0022607 cellular component assembly 2.44% (3/123) 3.35 0.003215 0.010424
GO:0016070 RNA metabolic process 4.88% (6/123) 2.05 0.003403 0.010856
GO:0009059 macromolecule biosynthetic process 5.69% (7/123) 1.85 0.003493 0.010969
GO:0019438 aromatic compound biosynthetic process 4.07% (5/123) 2.25 0.004155 0.012847
GO:0097659 nucleic acid-templated transcription 2.44% (3/123) 3.18 0.004504 0.013121
GO:0006351 transcription, DNA-templated 2.44% (3/123) 3.18 0.004504 0.013121
GO:0009259 ribonucleotide metabolic process 2.44% (3/123) 3.18 0.004504 0.013121
GO:0009150 purine ribonucleotide metabolic process 2.44% (3/123) 3.18 0.004504 0.013121
GO:0018130 heterocycle biosynthetic process 4.07% (5/123) 2.21 0.004641 0.013327
GO:0006163 purine nucleotide metabolic process 2.44% (3/123) 3.14 0.004869 0.013783
GO:0072521 purine-containing compound metabolic process 2.44% (3/123) 3.12 0.005057 0.014118
GO:0019693 ribose phosphate metabolic process 2.44% (3/123) 3.1 0.00525 0.014456
GO:0044249 cellular biosynthetic process 7.32% (9/123) 1.45 0.005838 0.015857
GO:1901362 organic cyclic compound biosynthetic process 4.07% (5/123) 2.07 0.006997 0.018751
GO:0015672 monovalent inorganic cation transport 2.44% (3/123) 2.94 0.007187 0.019009
GO:0009117 nucleotide metabolic process 2.44% (3/123) 2.9 0.007668 0.020016
GO:1901566 organonitrogen compound biosynthetic process 4.88% (6/123) 1.8 0.007922 0.020415
GO:0098655 cation transmembrane transport 2.44% (3/123) 2.84 0.008685 0.021031
GO:0098660 inorganic ion transmembrane transport 2.44% (3/123) 2.84 0.008685 0.021031
GO:0098662 inorganic cation transmembrane transport 2.44% (3/123) 2.84 0.008685 0.021031
GO:0006753 nucleoside phosphate metabolic process 2.44% (3/123) 2.84 0.008685 0.021031
GO:1901576 organic substance biosynthetic process 7.32% (9/123) 1.37 0.008389 0.021344
GO:0045333 cellular respiration 0.81% (1/123) 6.74 0.009316 0.021522
GO:0009512 cytochrome b6f complex 0.81% (1/123) 6.74 0.009316 0.021522
GO:0015980 energy derivation by oxidation of organic compounds 0.81% (1/123) 6.74 0.009316 0.021522
GO:0009060 aerobic respiration 0.81% (1/123) 6.74 0.009316 0.021522
GO:0055114 oxidation-reduction process 9.76% (12/123) 1.11 0.00964 0.022018
GO:0016779 nucleotidyltransferase activity 2.44% (3/123) 2.71 0.010946 0.02472
GO:0034220 ion transmembrane transport 2.44% (3/123) 2.68 0.011559 0.025815
GO:0048037 cofactor binding 7.32% (9/123) 1.29 0.011985 0.026184
GO:0017144 drug metabolic process 2.44% (3/123) 2.67 0.011873 0.026225
GO:0016168 chlorophyll binding 0.81% (1/123) 6.16 0.013941 0.029497
GO:0032774 RNA biosynthetic process 2.44% (3/123) 2.59 0.013859 0.029636
GO:0055086 nucleobase-containing small molecule metabolic process 2.44% (3/123) 2.59 0.013859 0.029636
GO:0090304 nucleic acid metabolic process 4.88% (6/123) 1.59 0.015062 0.031536
GO:0006396 RNA processing 2.44% (3/123) 2.51 0.016024 0.032533
GO:0005840 ribosome 3.25% (4/123) 2.06 0.015759 0.032655
GO:0003735 structural constituent of ribosome 3.25% (4/123) 2.05 0.016273 0.032708
GO:0006412 translation 3.25% (4/123) 2.06 0.016015 0.032846
GO:0043043 peptide biosynthetic process 3.25% (4/123) 2.04 0.016797 0.033427
GO:0043604 amide biosynthetic process 3.25% (4/123) 1.99 0.018432 0.035624
GO:0006518 peptide metabolic process 3.25% (4/123) 1.99 0.018432 0.035624
GO:0008152 metabolic process 24.39% (30/123) 0.55 0.018112 0.035691
GO:0009058 biosynthetic process 7.32% (9/123) 1.17 0.01933 0.036311
GO:0005198 structural molecule activity 3.25% (4/123) 1.98 0.018999 0.036369
GO:1901135 carbohydrate derivative metabolic process 2.44% (3/123) 2.41 0.019189 0.036387
GO:0043603 cellular amide metabolic process 3.25% (4/123) 1.93 0.021371 0.039775
GO:0009145 purine nucleoside triphosphate biosynthetic process 1.63% (2/123) 3.07 0.02375 0.039781
GO:0006754 ATP biosynthetic process 1.63% (2/123) 3.07 0.02375 0.039781
GO:0009201 ribonucleoside triphosphate biosynthetic process 1.63% (2/123) 3.07 0.02375 0.039781
GO:0009142 nucleoside triphosphate biosynthetic process 1.63% (2/123) 3.07 0.02375 0.039781
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 1.63% (2/123) 3.07 0.02375 0.039781
GO:0043228 non-membrane-bounded organelle 3.25% (4/123) 1.89 0.023265 0.040664
GO:0043232 intracellular non-membrane-bounded organelle 3.25% (4/123) 1.89 0.023265 0.040664
GO:0004129 cytochrome-c oxidase activity 0.81% (1/123) 5.42 0.023128 0.041139
GO:0016675 oxidoreductase activity, acting on a heme group of donors 0.81% (1/123) 5.42 0.023128 0.041139
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor 0.81% (1/123) 5.42 0.023128 0.041139
GO:0070069 cytochrome complex 0.81% (1/123) 5.42 0.023128 0.041139
GO:1990904 ribonucleoprotein complex 3.25% (4/123) 1.9 0.022943 0.042307
GO:0009124 nucleoside monophosphate biosynthetic process 1.63% (2/123) 2.96 0.027331 0.044302
GO:0009156 ribonucleoside monophosphate biosynthetic process 1.63% (2/123) 2.96 0.027331 0.044302
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 1.63% (2/123) 2.96 0.027331 0.044302
GO:0009127 purine nucleoside monophosphate biosynthetic process 1.63% (2/123) 2.96 0.027331 0.044302
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 0.81% (1/123) 5.16 0.027689 0.044525
GO:0019637 organophosphate metabolic process 2.44% (3/123) 2.19 0.028509 0.045478
GO:0009260 ribonucleotide biosynthetic process 1.63% (2/123) 2.86 0.031114 0.04848
GO:0009152 purine ribonucleotide biosynthetic process 1.63% (2/123) 2.86 0.031114 0.04848
GO:0046390 ribose phosphate biosynthetic process 1.63% (2/123) 2.86 0.031114 0.04848
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_79 0.023 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_80 0.132 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_165 0.037 Gene family Compare
Oryza sativa HCCA cluster Cluster_21 0.032 Gene family Compare
Oryza sativa HCCA cluster Cluster_83 0.032 Gene family Compare
Oryza sativa HCCA cluster Cluster_104 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_157 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_243 0.063 Gene family Compare
Picea abies HCCA cluster Cluster_20 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_26 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_106 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_284 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_28 0.073 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_2 0.077 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_3 0.027 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_4 0.042 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_110 0.038 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_120 0.065 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_132 0.031 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_157 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_191 0.032 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_192 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_220 0.056 Gene family Compare
Vitis vinifera HCCA cluster Cluster_21 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_48 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_64 0.023 Gene family Compare
Sequences (123) (download table)

InterPro Domains

GO Terms

Family Terms