Coexpression cluster: Cluster_47 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032991 protein-containing complex 16.3% (15/92) 2.8 0.0 1e-06
GO:0044424 intracellular part 17.39% (16/92) 2.25 0.0 2.8e-05
GO:0044464 cell part 17.39% (16/92) 2.17 0.0 4.1e-05
GO:0044428 nuclear part 5.43% (5/92) 4.22 8e-06 0.00041
GO:0044451 nucleoplasm part 4.35% (4/92) 5.03 7e-06 0.000456
GO:1990904 ribonucleoprotein complex 6.52% (6/92) 2.9 0.000158 0.004302
GO:0044271 cellular nitrogen compound biosynthetic process 8.7% (8/92) 2.4 0.000144 0.004343
GO:0043248 proteasome assembly 2.17% (2/92) 6.58 0.000179 0.004433
GO:0034641 cellular nitrogen compound metabolic process 11.96% (11/92) 1.96 0.000121 0.004699
GO:0006352 DNA-templated transcription, initiation 3.26% (3/92) 4.89 0.000141 0.004793
GO:0016070 RNA metabolic process 7.61% (7/92) 2.69 0.000109 0.00493
GO:0005575 cellular_component 20.65% (19/92) 1.28 0.000222 0.005041
GO:0032774 RNA biosynthetic process 4.35% (4/92) 3.42 0.000546 0.009901
GO:0090575 RNA polymerase II transcription factor complex 2.17% (2/92) 5.84 0.000533 0.010355
GO:0044798 nuclear transcription factor complex 2.17% (2/92) 5.84 0.000533 0.010355
GO:0009059 macromolecule biosynthetic process 7.61% (7/92) 2.27 0.000653 0.010448
GO:0006367 transcription initiation from RNA polymerase II promoter 2.17% (2/92) 5.7 0.00065 0.011049
GO:0090304 nucleic acid metabolic process 7.61% (7/92) 2.23 0.00074 0.011184
GO:0043232 intracellular non-membrane-bounded organelle 5.43% (5/92) 2.63 0.001314 0.014294
GO:0043228 non-membrane-bounded organelle 5.43% (5/92) 2.63 0.001314 0.014294
GO:0018130 heterocycle biosynthetic process 5.43% (5/92) 2.63 0.001314 0.014294
GO:0034470 ncRNA processing 3.26% (3/92) 3.94 0.000999 0.014302
GO:0004298 threonine-type endopeptidase activity 2.17% (2/92) 5.07 0.001585 0.014374
GO:0005839 proteasome core complex 2.17% (2/92) 5.07 0.001585 0.014374
GO:0070003 threonine-type peptidase activity 2.17% (2/92) 5.07 0.001585 0.014374
GO:1901360 organic cyclic compound metabolic process 8.7% (8/92) 1.89 0.001449 0.014596
GO:0005667 transcription factor complex 2.17% (2/92) 5.16 0.001402 0.014667
GO:0006725 cellular aromatic compound metabolic process 8.7% (8/92) 1.94 0.001189 0.014701
GO:0046483 heterocycle metabolic process 8.7% (8/92) 1.94 0.001177 0.015239
GO:0019438 aromatic compound biosynthetic process 5.43% (5/92) 2.67 0.001169 0.015904
GO:1901362 organic cyclic compound biosynthetic process 5.43% (5/92) 2.49 0.002026 0.017219
GO:0019843 rRNA binding 2.17% (2/92) 4.91 0.001984 0.017411
GO:0006807 nitrogen compound metabolic process 18.48% (17/92) 1.08 0.002309 0.019028
GO:0044444 cytoplasmic part 6.52% (6/92) 2.1 0.002878 0.020602
GO:0044422 organelle part 5.43% (5/92) 2.38 0.002851 0.020956
GO:0044446 intracellular organelle part 5.43% (5/92) 2.38 0.002851 0.020956
GO:0043170 macromolecule metabolic process 17.39% (16/92) 1.11 0.002676 0.021406
GO:0006139 nucleobase-containing compound metabolic process 7.61% (7/92) 1.9 0.0028 0.021757
GO:0044249 cellular biosynthetic process 8.7% (8/92) 1.7 0.003241 0.022606
GO:0006366 transcription by RNA polymerase II 1.09% (1/92) 8.16 0.003492 0.023166
GO:0034227 tRNA thio-modification 1.09% (1/92) 8.16 0.003492 0.023166
GO:0034654 nucleobase-containing compound biosynthetic process 4.35% (4/92) 2.64 0.003989 0.025836
GO:1901576 organic substance biosynthetic process 8.7% (8/92) 1.62 0.004588 0.029022
GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity 1.09% (1/92) 7.16 0.006972 0.035118
GO:0034312 diol biosynthetic process 1.09% (1/92) 7.16 0.006972 0.035118
GO:0046146 tetrahydrobiopterin metabolic process 1.09% (1/92) 7.16 0.006972 0.035118
GO:0006729 tetrahydrobiopterin biosynthetic process 1.09% (1/92) 7.16 0.006972 0.035118
GO:0005672 transcription factor TFIIA complex 1.09% (1/92) 7.16 0.006972 0.035118
GO:0008541 proteasome regulatory particle, lid subcomplex 1.09% (1/92) 7.16 0.006972 0.035118
GO:0005786 signal recognition particle, endoplasmic reticulum targeting 1.09% (1/92) 7.16 0.006972 0.035118
GO:0034311 diol metabolic process 1.09% (1/92) 7.16 0.006972 0.035118
GO:0030942 endoplasmic reticulum signal peptide binding 1.09% (1/92) 7.16 0.006972 0.035118
GO:0005840 ribosome 4.35% (4/92) 2.48 0.005836 0.035275
GO:0009987 cellular process 20.65% (19/92) 0.89 0.005708 0.035286
GO:0008033 tRNA processing 2.17% (2/92) 3.95 0.00742 0.036038
GO:0006396 RNA processing 3.26% (3/92) 2.93 0.007315 0.036174
GO:0034660 ncRNA metabolic process 3.26% (3/92) 2.9 0.007675 0.036625
GO:0003723 RNA binding 4.35% (4/92) 2.29 0.00935 0.041692
GO:0043229 intracellular organelle 6.52% (6/92) 1.74 0.00931 0.042204
GO:0043226 organelle 6.52% (6/92) 1.74 0.00931 0.042204
GO:0018193 peptidyl-amino acid modification 2.17% (2/92) 3.8 0.009053 0.042456
GO:0034622 cellular protein-containing complex assembly 2.17% (2/92) 3.74 0.009925 0.04354
GO:0009058 biosynthetic process 8.7% (8/92) 1.42 0.010301 0.044475
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_85 0.026 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_97 0.026 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_146 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_149 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_152 0.037 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_168 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_182 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_189 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_228 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_237 0.041 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_257 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_270 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_277 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_81 0.023 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_95 0.021 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_105 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_10 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_38 0.022 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_60 0.026 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_68 0.02 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_87 0.028 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_101 0.026 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_124 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_3 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_148 0.042 Gene family Compare
Oryza sativa HCCA cluster Cluster_167 0.026 Gene family Compare
Oryza sativa HCCA cluster Cluster_196 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_228 0.023 Gene family Compare
Oryza sativa HCCA cluster Cluster_242 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_256 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_283 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_322 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_5 0.026 Gene family Compare
Picea abies HCCA cluster Cluster_76 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_93 0.021 Gene family Compare
Picea abies HCCA cluster Cluster_161 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_239 0.02 Gene family Compare
Picea abies HCCA cluster Cluster_302 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_318 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_406 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_428 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_441 0.021 Gene family Compare
Picea abies HCCA cluster Cluster_473 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_67 0.028 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_109 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_110 0.02 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_130 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_148 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_188 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_13 0.063 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_100 0.047 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_121 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_131 0.04 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_150 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_165 0.022 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_187 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_204 0.02 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_211 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_229 0.025 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_237 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_240 0.021 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_297 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_304 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_306 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_32 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_35 0.026 Gene family Compare
Zea mays HCCA cluster Cluster_54 0.036 Gene family Compare
Zea mays HCCA cluster Cluster_78 0.023 Gene family Compare
Zea mays HCCA cluster Cluster_130 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_144 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_162 0.025 Gene family Compare
Zea mays HCCA cluster Cluster_182 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_214 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_259 0.038 Gene family Compare
Zea mays HCCA cluster Cluster_274 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_294 0.029 Gene family Compare
Zea mays HCCA cluster Cluster_310 0.023 Gene family Compare
Zea mays HCCA cluster Cluster_316 0.054 Gene family Compare
Sequences (92) (download table)

InterPro Domains

GO Terms

Family Terms