Coexpression cluster: Cluster_148 (HCCA cluster)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 12.28% (14/114) 2.93 0.0 2e-06
GO:0006725 cellular aromatic compound metabolic process 13.16% (15/114) 2.53 0.0 5e-06
GO:0006139 nucleobase-containing compound metabolic process 12.28% (14/114) 2.59 0.0 6e-06
GO:0016070 RNA metabolic process 9.65% (11/114) 3.04 0.0 6e-06
GO:1901360 organic cyclic compound metabolic process 13.16% (15/114) 2.49 0.0 6e-06
GO:0046483 heterocycle metabolic process 13.16% (15/114) 2.54 0.0 8e-06
GO:0034641 cellular nitrogen compound metabolic process 14.04% (16/114) 2.19 0.0 2e-05
GO:0006396 RNA processing 6.14% (7/114) 3.84 1e-06 2.6e-05
GO:0005488 binding 41.23% (47/114) 0.9 3e-06 0.000113
GO:0003676 nucleic acid binding 14.91% (17/114) 1.71 1.5e-05 0.000505
GO:0097159 organic cyclic compound binding 27.19% (31/114) 1.1 2.4e-05 0.000647
GO:1901363 heterocyclic compound binding 27.19% (31/114) 1.1 2.4e-05 0.000647
GO:0003674 molecular_function 57.89% (66/114) 0.56 4.1e-05 0.001035
GO:0044238 primary metabolic process 24.56% (28/114) 1.13 4.8e-05 0.001121
GO:0016853 isomerase activity 4.39% (5/114) 3.53 7.5e-05 0.001643
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor 1.75% (2/114) 6.85 0.000111 0.001724
GO:0004784 superoxide dismutase activity 1.75% (2/114) 6.85 0.000111 0.001724
GO:0016874 ligase activity 4.39% (5/114) 3.49 8.7e-05 0.001773
GO:0071704 organic substance metabolic process 24.56% (28/114) 1.07 9.4e-05 0.001808
GO:0140098 catalytic activity, acting on RNA 5.26% (6/114) 3.02 0.000102 0.001859
GO:0043167 ion binding 23.68% (27/114) 1.09 0.000111 0.001903
GO:0034660 ncRNA metabolic process 4.39% (5/114) 3.33 0.000146 0.002169
GO:0035639 purine ribonucleoside triphosphate binding 14.04% (16/114) 1.49 0.000174 0.002475
GO:0008152 metabolic process 29.82% (34/114) 0.84 0.000347 0.004721
GO:0044237 cellular metabolic process 19.3% (22/114) 1.11 0.000451 0.005895
GO:0000166 nucleotide binding 15.79% (18/114) 1.26 0.000487 0.005903
GO:1901265 nucleoside phosphate binding 15.79% (18/114) 1.26 0.000487 0.005903
GO:0006801 superoxide metabolic process 1.75% (2/114) 5.39 0.000995 0.009039
GO:0006265 DNA topological change 1.75% (2/114) 5.39 0.000995 0.009039
GO:0003916 DNA topoisomerase activity 1.75% (2/114) 5.39 0.000995 0.009039
GO:0003697 single-stranded DNA binding 1.75% (2/114) 5.39 0.000995 0.009039
GO:0072593 reactive oxygen species metabolic process 1.75% (2/114) 5.39 0.000995 0.009039
GO:0043168 anion binding 15.79% (18/114) 1.19 0.000834 0.009088
GO:0006399 tRNA metabolic process 3.51% (4/114) 3.27 0.000813 0.009168
GO:0006807 nitrogen compound metabolic process 18.42% (21/114) 1.08 0.000789 0.009212
GO:0036094 small molecule binding 15.79% (18/114) 1.18 0.000916 0.009663
GO:0032555 purine ribonucleotide binding 14.04% (16/114) 1.23 0.001272 0.011244
GO:0071103 DNA conformation change 1.75% (2/114) 5.15 0.001403 0.011471
GO:0017076 purine nucleotide binding 14.04% (16/114) 1.22 0.001341 0.011536
GO:0032553 ribonucleotide binding 14.04% (16/114) 1.21 0.001385 0.011611
GO:0097367 carbohydrate derivative binding 14.04% (16/114) 1.21 0.001458 0.01163
GO:0043170 macromolecule metabolic process 16.67% (19/114) 1.05 0.001887 0.014353
GO:0034470 ncRNA processing 2.63% (3/114) 3.63 0.001851 0.014411
GO:0006520 cellular amino acid metabolic process 3.51% (4/114) 2.9 0.002093 0.015556
GO:0009987 cellular process 20.18% (23/114) 0.85 0.003442 0.025012
GO:0003723 RNA binding 4.39% (5/114) 2.3 0.003613 0.025686
GO:0006423 cysteinyl-tRNA aminoacylation 0.88% (1/114) 7.85 0.004327 0.02721
GO:0006426 glycyl-tRNA aminoacylation 0.88% (1/114) 7.85 0.004327 0.02721
GO:0004817 cysteine-tRNA ligase activity 0.88% (1/114) 7.85 0.004327 0.02721
GO:0004834 tryptophan synthase activity 0.88% (1/114) 7.85 0.004327 0.02721
GO:0004820 glycine-tRNA ligase activity 0.88% (1/114) 7.85 0.004327 0.02721
GO:0008150 biological_process 35.96% (41/114) 0.55 0.004519 0.027883
GO:0003677 DNA binding 7.02% (8/114) 1.61 0.004889 0.028549
GO:0005524 ATP binding 10.53% (12/114) 1.27 0.004105 0.028558
GO:0004222 metalloendopeptidase activity 1.75% (2/114) 4.27 0.004813 0.028618
GO:0051276 chromosome organization 1.75% (2/114) 4.27 0.004813 0.028618
GO:0032549 ribonucleoside binding 3.51% (4/114) 2.46 0.006181 0.033135
GO:0032561 guanyl ribonucleotide binding 3.51% (4/114) 2.46 0.006181 0.033135
GO:0005525 GTP binding 3.51% (4/114) 2.46 0.006181 0.033135
GO:0032550 purine ribonucleoside binding 3.51% (4/114) 2.46 0.006181 0.033135
GO:0001883 purine nucleoside binding 3.51% (4/114) 2.46 0.006181 0.033135
GO:0001882 nucleoside binding 3.51% (4/114) 2.45 0.00631 0.033281
GO:0140101 catalytic activity, acting on a tRNA 2.63% (3/114) 2.99 0.006424 0.033344
GO:0019001 guanyl nucleotide binding 3.51% (4/114) 2.42 0.006845 0.034972
GO:0008144 drug binding 10.53% (12/114) 1.17 0.007019 0.035309
GO:0008237 metallopeptidase activity 1.75% (2/114) 3.95 0.007459 0.036406
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 1.75% (2/114) 3.95 0.007459 0.036406
GO:0004134 4-alpha-glucanotransferase activity 0.88% (1/114) 6.85 0.008636 0.04034
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.88% (1/114) 6.85 0.008636 0.04034
GO:0004133 glycogen debranching enzyme activity 0.88% (1/114) 6.85 0.008636 0.04034
GO:0016779 nucleotidyltransferase activity 2.63% (3/114) 2.82 0.008908 0.041027
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_5 0.022 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_39 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_51 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.15 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_97 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_132 0.043 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_140 0.029 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_192 0.047 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_206 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_208 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_214 0.05 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_238 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_245 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_246 0.033 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_265 0.017 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_38 0.014 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_100 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_198 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_6 0.02 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_8 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_37 0.02 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_40 0.014 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_64 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_66 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_69 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_84 0.03 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_98 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_140 0.021 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_142 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.118 Gene family Compare
Oryza sativa HCCA cluster Cluster_67 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_80 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_126 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_170 0.067 Gene family Compare
Oryza sativa HCCA cluster Cluster_174 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_226 0.028 Gene family Compare
Oryza sativa HCCA cluster Cluster_250 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_288 0.033 Gene family Compare
Oryza sativa HCCA cluster Cluster_299 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_36 0.02 Gene family Compare
Picea abies HCCA cluster Cluster_186 0.021 Gene family Compare
Picea abies HCCA cluster Cluster_194 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_205 0.034 Gene family Compare
Picea abies HCCA cluster Cluster_275 0.028 Gene family Compare
Picea abies HCCA cluster Cluster_345 0.063 Gene family Compare
Picea abies HCCA cluster Cluster_458 0.027 Gene family Compare
Picea abies HCCA cluster Cluster_488 0.032 Gene family Compare
Picea abies HCCA cluster Cluster_492 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_43 0.06 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_55 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_64 0.026 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_101 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_108 0.02 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_114 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_115 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_149 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_165 0.038 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_176 0.02 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_15 0.069 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_48 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_85 0.079 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.055 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_127 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_141 0.068 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_183 0.034 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_206 0.026 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_231 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_234 0.082 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_244 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_245 0.037 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_282 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_2 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_29 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_104 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_53 0.129 Gene family Compare
Zea mays HCCA cluster Cluster_101 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.109 Gene family Compare
Zea mays HCCA cluster Cluster_163 0.029 Gene family Compare
Zea mays HCCA cluster Cluster_209 0.036 Gene family Compare
Zea mays HCCA cluster Cluster_215 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_233 0.075 Gene family Compare
Zea mays HCCA cluster Cluster_246 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_271 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_297 0.026 Gene family Compare
Zea mays HCCA cluster Cluster_331 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_354 0.024 Gene family Compare
Sequences (114) (download table)

InterPro Domains

GO Terms

Family Terms