Coexpression cluster: Cluster_234 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 19.13% (22/115) 2.7 0.0 0.0
GO:0003723 RNA binding 9.57% (11/115) 3.62 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 10.43% (12/115) 2.91 0.0 4e-06
GO:0046483 heterocycle metabolic process 12.17% (14/115) 2.58 0.0 4e-06
GO:0044237 cellular metabolic process 24.35% (28/115) 1.62 0.0 4e-06
GO:1901360 organic cyclic compound metabolic process 12.17% (14/115) 2.54 0.0 5e-06
GO:0009987 cellular process 26.96% (31/115) 1.45 0.0 6e-06
GO:0044271 cellular nitrogen compound biosynthetic process 11.3% (13/115) 2.78 0.0 6e-06
GO:0016874 ligase activity 5.22% (6/115) 4.45 0.0 1e-05
GO:0044249 cellular biosynthetic process 12.17% (14/115) 2.4 0.0 1.2e-05
GO:0016070 RNA metabolic process 8.7% (10/115) 2.99 1e-06 1.4e-05
GO:0006725 cellular aromatic compound metabolic process 11.3% (13/115) 2.47 1e-06 1.5e-05
GO:0005840 ribosome 7.83% (9/115) 3.21 1e-06 1.5e-05
GO:1901576 organic substance biosynthetic process 12.17% (14/115) 2.33 1e-06 1.6e-05
GO:0006807 nitrogen compound metabolic process 21.74% (25/115) 1.55 1e-06 1.7e-05
GO:0043228 non-membrane-bounded organelle 7.83% (9/115) 3.06 2e-06 2.4e-05
GO:0043232 intracellular non-membrane-bounded organelle 7.83% (9/115) 3.06 2e-06 2.4e-05
GO:1990904 ribonucleoprotein complex 7.83% (9/115) 3.02 2e-06 2.8e-05
GO:0140101 catalytic activity, acting on a tRNA 4.35% (5/115) 4.57 2e-06 3.3e-05
GO:0009058 biosynthetic process 12.17% (14/115) 2.18 3e-06 3.7e-05
GO:0034660 ncRNA metabolic process 5.22% (6/115) 3.76 6e-06 7.4e-05
GO:0090304 nucleic acid metabolic process 8.7% (10/115) 2.6 7e-06 8.1e-05
GO:0071704 organic substance metabolic process 23.48% (27/115) 1.3 9e-06 8.1e-05
GO:0043043 peptide biosynthetic process 6.96% (8/115) 2.98 9e-06 8.4e-05
GO:0043039 tRNA aminoacylation 3.48% (4/115) 4.96 8e-06 8.5e-05
GO:0043038 amino acid activation 3.48% (4/115) 4.96 8e-06 8.5e-05
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.48% (4/115) 5.0 8e-06 8.6e-05
GO:0004812 aminoacyl-tRNA ligase activity 3.48% (4/115) 5.0 8e-06 8.6e-05
GO:0004853 uroporphyrinogen decarboxylase activity 1.74% (2/115) 8.24 1.1e-05 8.9e-05
GO:0043604 amide biosynthetic process 6.96% (8/115) 2.95 1e-05 8.9e-05
GO:0006518 peptide metabolic process 6.96% (8/115) 2.95 1e-05 8.9e-05
GO:0006139 nucleobase-containing compound metabolic process 9.57% (11/115) 2.36 1.1e-05 9e-05
GO:0140098 catalytic activity, acting on RNA 6.09% (7/115) 3.28 8e-06 9.1e-05
GO:0043603 cellular amide metabolic process 6.96% (8/115) 2.9 1.3e-05 0.000102
GO:0008173 RNA methyltransferase activity 2.61% (3/115) 5.92 1.5e-05 0.00012
GO:0043170 macromolecule metabolic process 18.26% (21/115) 1.43 2.8e-05 0.000213
GO:0006399 tRNA metabolic process 4.35% (5/115) 3.79 3.3e-05 0.000244
GO:0003676 nucleic acid binding 14.78% (17/115) 1.61 4e-05 0.000284
GO:0009059 macromolecule biosynthetic process 7.83% (9/115) 2.43 4.9e-05 0.000339
GO:1901564 organonitrogen compound metabolic process 16.52% (19/115) 1.47 5.1e-05 0.000349
GO:0006412 translation 6.09% (7/115) 2.81 6.9e-05 0.000455
GO:0003735 structural constituent of ribosome 6.09% (7/115) 2.79 7.3e-05 0.000472
GO:0008152 metabolic process 26.96% (31/115) 0.99 0.000103 0.000653
GO:0032991 protein-containing complex 9.57% (11/115) 1.98 0.000114 0.000707
GO:0005198 structural molecule activity 6.09% (7/115) 2.68 0.000119 0.000717
GO:0044444 cytoplasmic part 7.83% (9/115) 2.22 0.000144 0.00085
GO:0000049 tRNA binding 1.74% (2/115) 6.66 0.00016 0.000927
GO:0006457 protein folding 2.61% (3/115) 4.79 0.000177 0.000984
GO:0006418 tRNA aminoacylation for protein translation 2.61% (3/115) 4.79 0.000177 0.000984
GO:0034645 cellular macromolecule biosynthetic process 6.96% (8/115) 2.35 0.000185 0.001006
GO:1901363 heterocyclic compound binding 23.48% (27/115) 1.04 0.000202 0.001056
GO:0097159 organic cyclic compound binding 23.48% (27/115) 1.04 0.000202 0.001056
GO:0006396 RNA processing 4.35% (5/115) 3.04 0.000372 0.001907
GO:0006520 cellular amino acid metabolic process 3.48% (4/115) 3.56 0.000386 0.001942
GO:0005622 intracellular 4.35% (5/115) 2.98 0.000451 0.002231
GO:0006779 porphyrin-containing compound biosynthetic process 1.74% (2/115) 5.79 0.000581 0.002824
GO:0044464 cell part 11.3% (13/115) 1.5 0.000691 0.003131
GO:0044238 primary metabolic process 19.13% (22/115) 1.07 0.000662 0.003157
GO:0043226 organelle 7.83% (9/115) 1.91 0.000685 0.003157
GO:0043229 intracellular organelle 7.83% (9/115) 1.91 0.000685 0.003157
GO:0019898 extrinsic component of membrane 1.74% (2/115) 5.44 0.000956 0.004261
GO:0006778 porphyrin-containing compound metabolic process 1.74% (2/115) 5.34 0.0011 0.004827
GO:0044424 intracellular part 10.43% (12/115) 1.46 0.001394 0.00602
GO:0044281 small molecule metabolic process 5.22% (6/115) 2.29 0.00152 0.006462
GO:0033014 tetrapyrrole biosynthetic process 1.74% (2/115) 5.0 0.001776 0.007434
GO:0018130 heterocycle biosynthetic process 4.35% (5/115) 2.51 0.001928 0.007946
GO:0008150 biological_process 33.04% (38/115) 0.64 0.001987 0.008067
GO:0033013 tetrapyrrole metabolic process 1.74% (2/115) 4.72 0.002606 0.010272
GO:0009654 photosystem II oxygen evolving complex 1.74% (2/115) 4.72 0.002606 0.010272
GO:1901362 organic cyclic compound biosynthetic process 4.35% (5/115) 2.38 0.002841 0.01104
GO:2000038 regulation of stomatal complex development 0.87% (1/115) 8.24 0.003297 0.011072
GO:0003919 FMN adenylyltransferase activity 0.87% (1/115) 8.24 0.003297 0.011072
GO:0051239 regulation of multicellular organismal process 0.87% (1/115) 8.24 0.003297 0.011072
GO:0051240 positive regulation of multicellular organismal process 0.87% (1/115) 8.24 0.003297 0.011072
GO:0050793 regulation of developmental process 0.87% (1/115) 8.24 0.003297 0.011072
GO:0048582 positive regulation of post-embryonic development 0.87% (1/115) 8.24 0.003297 0.011072
GO:0048580 regulation of post-embryonic development 0.87% (1/115) 8.24 0.003297 0.011072
GO:2000026 regulation of multicellular organismal development 0.87% (1/115) 8.24 0.003297 0.011072
GO:2000123 positive regulation of stomatal complex development 0.87% (1/115) 8.24 0.003297 0.011072
GO:0051094 positive regulation of developmental process 0.87% (1/115) 8.24 0.003297 0.011072
GO:0019843 rRNA binding 1.74% (2/115) 4.6 0.003077 0.011786
GO:1990204 oxidoreductase complex 1.74% (2/115) 4.44 0.003852 0.012622
GO:0009523 photosystem II 1.74% (2/115) 4.44 0.003852 0.012622
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.74% (2/115) 4.39 0.004128 0.013367
GO:0004019 adenylosuccinate synthase activity 0.87% (1/115) 7.24 0.006583 0.020583
GO:0005542 folic acid binding 0.87% (1/115) 7.24 0.006583 0.020583
GO:0072341 modified amino acid binding 0.87% (1/115) 7.24 0.006583 0.020583
GO:0043436 oxoacid metabolic process 3.48% (4/115) 2.37 0.00764 0.023349
GO:0019752 carboxylic acid metabolic process 3.48% (4/115) 2.37 0.00764 0.023349
GO:0006082 organic acid metabolic process 3.48% (4/115) 2.37 0.007753 0.02343
GO:0015031 protein transport 2.61% (3/115) 2.75 0.010214 0.029875
GO:0015833 peptide transport 2.61% (3/115) 2.75 0.010214 0.029875
GO:0042886 amide transport 2.61% (3/115) 2.75 0.010214 0.029875
GO:0045184 establishment of protein localization 2.61% (3/115) 2.73 0.010628 0.030754
GO:0033036 macromolecule localization 2.61% (3/115) 2.71 0.011052 0.031314
GO:0008104 protein localization 2.61% (3/115) 2.71 0.011052 0.031314
GO:0019438 aromatic compound biosynthetic process 3.48% (4/115) 2.19 0.011816 0.033133
GO:0043177 organic acid binding 0.87% (1/115) 6.24 0.013124 0.034324
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 0.87% (1/115) 6.24 0.013124 0.034324
GO:0016423 tRNA (guanine) methyltransferase activity 0.87% (1/115) 6.24 0.013124 0.034324
GO:0031406 carboxylic acid binding 0.87% (1/115) 6.24 0.013124 0.034324
GO:0016831 carboxy-lyase activity 1.74% (2/115) 3.52 0.013309 0.034477
GO:0005488 binding 28.7% (33/115) 0.55 0.012546 0.034822
GO:0051536 iron-sulfur cluster binding 1.74% (2/115) 3.54 0.012834 0.034909
GO:0051540 metal cluster binding 1.74% (2/115) 3.54 0.012834 0.034909
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor 0.87% (1/115) 5.92 0.016378 0.042027
GO:0071705 nitrogen compound transport 2.61% (3/115) 2.42 0.018867 0.047962
GO:0008175 tRNA methyltransferase activity 0.87% (1/115) 5.66 0.019622 0.049418
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_30 0.081 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.092 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_132 0.024 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_140 0.119 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_182 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_192 0.052 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_206 0.031 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_208 0.022 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_214 0.049 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_238 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_265 0.034 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_38 0.014 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_71 0.026 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_85 0.018 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_8 0.094 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_9 0.048 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_10 0.026 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_64 0.023 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_84 0.033 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.164 Gene family Compare
Oryza sativa HCCA cluster Cluster_80 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_126 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_170 0.136 Gene family Compare
Oryza sativa HCCA cluster Cluster_226 0.04 Gene family Compare
Picea abies HCCA cluster Cluster_186 0.059 Gene family Compare
Picea abies HCCA cluster Cluster_205 0.045 Gene family Compare
Picea abies HCCA cluster Cluster_267 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_275 0.02 Gene family Compare
Picea abies HCCA cluster Cluster_332 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_345 0.024 Gene family Compare
Picea abies HCCA cluster Cluster_373 0.025 Gene family Compare
Picea abies HCCA cluster Cluster_403 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_476 0.022 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_11 0.025 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_43 0.063 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_82 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_165 0.031 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_176 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_203 0.031 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_206 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_2 0.062 Gene family Compare
Vitis vinifera HCCA cluster Cluster_55 0.068 Gene family Compare
Vitis vinifera HCCA cluster Cluster_58 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_81 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_104 0.034 Gene family Compare
Vitis vinifera HCCA cluster Cluster_120 0.088 Gene family Compare
Vitis vinifera HCCA cluster Cluster_148 0.082 Gene family Compare
Vitis vinifera HCCA cluster Cluster_203 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_211 0.083 Gene family Compare
Zea mays HCCA cluster Cluster_45 0.026 Gene family Compare
Zea mays HCCA cluster Cluster_53 0.06 Gene family Compare
Zea mays HCCA cluster Cluster_69 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_70 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_75 0.09 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.046 Gene family Compare
Zea mays HCCA cluster Cluster_163 0.09 Gene family Compare
Zea mays HCCA cluster Cluster_209 0.035 Gene family Compare
Zea mays HCCA cluster Cluster_215 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_233 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_246 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_258 0.081 Gene family Compare
Zea mays HCCA cluster Cluster_297 0.032 Gene family Compare
Zea mays HCCA cluster Cluster_313 0.026 Gene family Compare
Zea mays HCCA cluster Cluster_354 0.023 Gene family Compare
Sequences (115) (download table)

InterPro Domains

GO Terms

Family Terms