Coexpression cluster: Cluster_25 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044281 small molecule metabolic process 24.0% (12/50) 3.78 0.0 0.0
GO:0055086 nucleobase-containing small molecule metabolic process 16.0% (8/50) 3.97 0.0 4e-06
GO:1901566 organonitrogen compound biosynthetic process 16.0% (8/50) 3.66 0.0 1.5e-05
GO:0044249 cellular biosynthetic process 20.0% (10/50) 3.0 0.0 2e-05
GO:1901576 organic substance biosynthetic process 20.0% (10/50) 2.92 1e-06 2.8e-05
GO:0009058 biosynthetic process 20.0% (10/50) 2.79 1e-06 4.5e-05
GO:0072522 purine-containing compound biosynthetic process 8.0% (4/50) 5.61 1e-06 4.8e-05
GO:1901135 carbohydrate derivative metabolic process 10.0% (5/50) 4.6 2e-06 5.4e-05
GO:0009116 nucleoside metabolic process 6.0% (3/50) 6.6 3e-06 7.8e-05
GO:1901657 glycosyl compound metabolic process 6.0% (3/50) 6.6 3e-06 7.8e-05
GO:0009117 nucleotide metabolic process 12.0% (6/50) 3.7 6e-06 0.000135
GO:0006753 nucleoside phosphate metabolic process 12.0% (6/50) 3.67 7e-06 0.000137
GO:0009987 cellular process 36.0% (18/50) 1.61 8e-06 0.000143
GO:0044237 cellular metabolic process 30.0% (15/50) 1.83 1e-05 0.000164
GO:0072521 purine-containing compound metabolic process 8.0% (4/50) 4.83 1.2e-05 0.000178
GO:1901564 organonitrogen compound metabolic process 26.0% (13/50) 1.96 1.7e-05 0.000234
GO:0034654 nucleobase-containing compound biosynthetic process 12.0% (6/50) 3.46 1.7e-05 0.000241
GO:0019637 organophosphate metabolic process 12.0% (6/50) 3.39 2.2e-05 0.000277
GO:0006807 nitrogen compound metabolic process 30.0% (15/50) 1.72 2.4e-05 0.000288
GO:0009084 glutamine family amino acid biosynthetic process 4.0% (2/50) 7.47 4.7e-05 0.000367
GO:0009064 glutamine family amino acid metabolic process 4.0% (2/50) 7.47 4.7e-05 0.000367
GO:0006188 IMP biosynthetic process 4.0% (2/50) 7.47 4.7e-05 0.000367
GO:0046040 IMP metabolic process 4.0% (2/50) 7.47 4.7e-05 0.000367
GO:0018130 heterocycle biosynthetic process 12.0% (6/50) 3.18 4.9e-05 0.000378
GO:0006164 purine nucleotide biosynthetic process 6.0% (3/50) 5.36 5.2e-05 0.000386
GO:1901293 nucleoside phosphate biosynthetic process 10.0% (5/50) 3.67 4.4e-05 0.000402
GO:0009165 nucleotide biosynthetic process 10.0% (5/50) 3.67 4.4e-05 0.000402
GO:0044283 small molecule biosynthetic process 8.0% (4/50) 4.43 3.5e-05 0.000405
GO:0006520 amino acid metabolic process 8.0% (4/50) 4.36 4.2e-05 0.00042
GO:0009127 purine nucleoside monophosphate biosynthetic process 4.0% (2/50) 7.15 7.7e-05 0.000432
GO:0009167 purine ribonucleoside monophosphate metabolic process 4.0% (2/50) 7.15 7.7e-05 0.000432
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 4.0% (2/50) 7.15 7.7e-05 0.000432
GO:0009123 nucleoside monophosphate metabolic process 4.0% (2/50) 7.15 7.7e-05 0.000432
GO:0009126 purine nucleoside monophosphate metabolic process 4.0% (2/50) 7.15 7.7e-05 0.000432
GO:0009124 nucleoside monophosphate biosynthetic process 4.0% (2/50) 7.15 7.7e-05 0.000432
GO:0009161 ribonucleoside monophosphate metabolic process 4.0% (2/50) 7.15 7.7e-05 0.000432
GO:0009156 ribonucleoside monophosphate biosynthetic process 4.0% (2/50) 7.15 7.7e-05 0.000432
GO:0019438 aromatic compound biosynthetic process 12.0% (6/50) 3.22 4.2e-05 0.000435
GO:0044271 cellular nitrogen compound biosynthetic process 14.0% (7/50) 2.79 6.1e-05 0.000435
GO:1901362 organic cyclic compound biosynthetic process 12.0% (6/50) 3.11 6.4e-05 0.000443
GO:0008652 amino acid biosynthetic process 6.0% (3/50) 5.47 4.1e-05 0.000446
GO:0006139 nucleobase-containing compound metabolic process 16.0% (8/50) 2.47 8.3e-05 0.000453
GO:1901137 carbohydrate derivative biosynthetic process 6.0% (3/50) 5.06 9.9e-05 0.000513
GO:0034641 cellular nitrogen compound metabolic process 18.0% (9/50) 2.24 9.7e-05 0.000516
GO:0090407 organophosphate biosynthetic process 10.0% (5/50) 3.39 0.000111 0.000564
GO:0071704 organic substance metabolic process 30.0% (15/50) 1.53 0.000114 0.000565
GO:0008150 biological_process 38.0% (19/50) 1.25 0.000133 0.000648
GO:0006725 cellular aromatic compound metabolic process 16.0% (8/50) 2.36 0.000142 0.000676
GO:0046483 heterocycle metabolic process 16.0% (8/50) 2.35 0.000147 0.000687
GO:0046394 carboxylic acid biosynthetic process 6.0% (3/50) 4.85 0.000153 0.000701
GO:1901360 organic cyclic compound metabolic process 16.0% (8/50) 2.32 0.000172 0.000774
GO:0016053 organic acid biosynthetic process 6.0% (3/50) 4.7 0.000208 0.000917
GO:0044238 primary metabolic process 28.0% (14/50) 1.49 0.000269 0.001161
GO:0043436 oxoacid metabolic process 8.0% (4/50) 3.65 0.000287 0.001172
GO:0006082 organic acid metabolic process 8.0% (4/50) 3.65 0.000287 0.001172
GO:0019752 carboxylic acid metabolic process 8.0% (4/50) 3.66 0.000277 0.001175
GO:0008152 metabolic process 30.0% (15/50) 1.4 0.0003 0.001205
GO:0006163 purine nucleotide metabolic process 6.0% (3/50) 4.5 0.000313 0.001236
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 4.0% (2/50) 5.77 0.000595 0.00231
GO:1901607 alpha-amino acid biosynthetic process 4.0% (2/50) 5.56 0.000798 0.003047
GO:0009152 purine ribonucleotide biosynthetic process 4.0% (2/50) 5.22 0.001291 0.004693
GO:0046390 ribose phosphate biosynthetic process 4.0% (2/50) 5.22 0.001291 0.004693
GO:0009260 ribonucleotide biosynthetic process 4.0% (2/50) 5.22 0.001291 0.004693
GO:1901605 alpha-amino acid metabolic process 4.0% (2/50) 5.15 0.001432 0.005044
GO:0016879 ligase activity, forming carbon-nitrogen bonds 4.0% (2/50) 5.15 0.001432 0.005044
GO:0006793 phosphorus metabolic process 16.0% (8/50) 1.82 0.001689 0.005772
GO:0006796 phosphate-containing compound metabolic process 16.0% (8/50) 1.82 0.001689 0.005772
GO:0016597 amino acid binding 2.0% (1/50) 8.47 0.002818 0.007418
GO:1901659 glycosyl compound biosynthetic process 2.0% (1/50) 8.47 0.002818 0.007418
GO:0034404 nucleobase-containing small molecule biosynthetic process 2.0% (1/50) 8.47 0.002818 0.007418
GO:0004055 argininosuccinate synthase activity 2.0% (1/50) 8.47 0.002818 0.007418
GO:0009163 nucleoside biosynthetic process 2.0% (1/50) 8.47 0.002818 0.007418
GO:0006166 purine ribonucleoside salvage 2.0% (1/50) 8.47 0.002818 0.007418
GO:0006190 inosine salvage 2.0% (1/50) 8.47 0.002818 0.007418
GO:0042455 ribonucleoside biosynthetic process 2.0% (1/50) 8.47 0.002818 0.007418
GO:0046128 purine ribonucleoside metabolic process 2.0% (1/50) 8.47 0.002818 0.007418
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity 2.0% (1/50) 8.47 0.002818 0.007418
GO:0042451 purine nucleoside biosynthetic process 2.0% (1/50) 8.47 0.002818 0.007418
GO:0042278 purine nucleoside metabolic process 2.0% (1/50) 8.47 0.002818 0.007418
GO:0043094 cellular metabolic compound salvage 2.0% (1/50) 8.47 0.002818 0.007418
GO:0003937 IMP cyclohydrolase activity 2.0% (1/50) 8.47 0.002818 0.007418
GO:0043174 nucleoside salvage 2.0% (1/50) 8.47 0.002818 0.007418
GO:0046102 inosine metabolic process 2.0% (1/50) 8.47 0.002818 0.007418
GO:0046103 inosine biosynthetic process 2.0% (1/50) 8.47 0.002818 0.007418
GO:0046129 purine ribonucleoside biosynthetic process 2.0% (1/50) 8.47 0.002818 0.007418
GO:0050483 IMP 5'-nucleotidase activity 2.0% (1/50) 8.47 0.002818 0.007418
GO:0043101 purine-containing compound salvage 2.0% (1/50) 8.47 0.002818 0.007418
GO:0003824 catalytic activity 30.0% (15/50) 1.04 0.003911 0.010176
GO:0006526 arginine biosynthetic process 2.0% (1/50) 7.47 0.005629 0.011407
GO:0006525 arginine metabolic process 2.0% (1/50) 7.47 0.005629 0.011407
GO:0009119 ribonucleoside metabolic process 2.0% (1/50) 7.47 0.005629 0.011407
GO:0016743 carboxyl- or carbamoyltransferase activity 2.0% (1/50) 7.47 0.005629 0.011407
GO:0006189 'de novo' IMP biosynthetic process 2.0% (1/50) 7.47 0.005629 0.011407
GO:0008253 5'-nucleotidase activity 2.0% (1/50) 7.47 0.005629 0.011407
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity 2.0% (1/50) 7.47 0.005629 0.011407
GO:0005338 nucleotide-sugar transmembrane transporter activity 2.0% (1/50) 7.47 0.005629 0.011407
GO:0006541 glutamine metabolic process 2.0% (1/50) 7.47 0.005629 0.011407
GO:0000139 Golgi membrane 2.0% (1/50) 7.47 0.005629 0.011407
GO:0019238 cyclohydrolase activity 2.0% (1/50) 7.47 0.005629 0.011407
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines 2.0% (1/50) 7.47 0.005629 0.011407
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity 2.0% (1/50) 7.47 0.005629 0.011407
GO:0015780 nucleotide-sugar transmembrane transport 2.0% (1/50) 7.47 0.005629 0.011407
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport 2.0% (1/50) 7.47 0.005629 0.011407
GO:0009446 putrescine biosynthetic process 2.0% (1/50) 7.47 0.005629 0.011407
GO:0008252 nucleotidase activity 2.0% (1/50) 7.47 0.005629 0.011407
GO:0009445 putrescine metabolic process 2.0% (1/50) 7.47 0.005629 0.011407
GO:0004668 protein-arginine deiminase activity 2.0% (1/50) 7.47 0.005629 0.011407
GO:0006542 glutamine biosynthetic process 2.0% (1/50) 7.47 0.005629 0.011407
GO:0022857 transmembrane transporter activity 8.0% (4/50) 2.55 0.004828 0.012422
GO:0019693 ribose phosphate metabolic process 4.0% (2/50) 4.19 0.005397 0.013289
GO:0009259 ribonucleotide metabolic process 4.0% (2/50) 4.19 0.005397 0.013289
GO:0009150 purine ribonucleotide metabolic process 4.0% (2/50) 4.19 0.005397 0.013289
GO:0005215 transporter activity 8.0% (4/50) 2.51 0.005335 0.013574
GO:0009309 amine biosynthetic process 2.0% (1/50) 6.89 0.008432 0.01609
GO:0042401 biogenic amine biosynthetic process 2.0% (1/50) 6.89 0.008432 0.01609
GO:0016842 amidine-lyase activity 2.0% (1/50) 6.89 0.008432 0.01609
GO:0043177 organic acid binding 2.0% (1/50) 6.89 0.008432 0.01609
GO:0006596 polyamine biosynthetic process 2.0% (1/50) 6.89 0.008432 0.01609
GO:0006595 polyamine metabolic process 2.0% (1/50) 6.89 0.008432 0.01609
GO:0003674 molecular_function 44.0% (22/50) 0.69 0.008111 0.016293
GO:0016880 acid-ammonia (or amide) ligase activity 2.0% (1/50) 6.47 0.011227 0.020404
GO:0016840 carbon-nitrogen lyase activity 2.0% (1/50) 6.47 0.011227 0.020404
GO:0004356 glutamate-ammonia ligase activity 2.0% (1/50) 6.47 0.011227 0.020404
GO:0016211 ammonia ligase activity 2.0% (1/50) 6.47 0.011227 0.020404
GO:1901264 carbohydrate derivative transport 2.0% (1/50) 6.47 0.011227 0.020404
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 2.0% (1/50) 6.47 0.011227 0.020404
GO:0016829 lyase activity 6.0% (3/50) 2.66 0.011805 0.021286
GO:0006576 biogenic amine metabolic process 2.0% (1/50) 6.15 0.014014 0.024878
GO:0098588 bounding membrane of organelle 2.0% (1/50) 6.15 0.014014 0.024878
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 2.0% (1/50) 5.89 0.016794 0.029357
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 2.0% (1/50) 5.89 0.016794 0.029357
GO:0016020 membrane 8.0% (4/50) 2.0 0.017459 0.030288
GO:0016874 ligase activity 4.0% (2/50) 3.22 0.019429 0.033453
GO:1901505 carbohydrate derivative transmembrane transporter activity 2.0% (1/50) 5.47 0.02233 0.0376
GO:0015932 nucleobase-containing compound transmembrane transporter activity 2.0% (1/50) 5.47 0.02233 0.0376
GO:0009308 amine metabolic process 2.0% (1/50) 5.47 0.02233 0.0376
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 2.0% (1/50) 5.15 0.027835 0.046191
GO:0008519 ammonium transmembrane transporter activity 2.0% (1/50) 5.15 0.027835 0.046191
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Actinostachys digitata HCCA Cluster_264 0.015 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_284 0.022 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_76 0.02 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_137 0.019 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_13 0.017 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_26 0.06 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_40 0.024 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_77 0.024 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_5 0.032 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_10 0.018 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_26 0.016 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_43 0.03 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.023 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_65 0.026 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_74 0.022 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_79 0.027 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_103 0.019 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_16 0.019 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_72 0.015 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_123 0.016 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_126 0.026 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_41 0.032 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_151 0.015 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_29 0.02 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_105 0.019 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_142 0.02 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_251 0.018 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_188 0.025 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_238 0.02 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_379 0.018 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_130 0.017 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_130 0.021 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_231 0.016 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_8 0.035 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_26 0.015 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_51 0.016 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_111 0.015 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_3 0.017 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_92 0.025 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_147 0.023 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_182 0.022 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_38 0.022 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_96 0.023 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_114 0.016 OrthoFinder output from all 47 species Compare
Sequences (50) (download table)

InterPro Domains

GO Terms

Family Terms