Coexpression cluster: Cluster_44 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009089 lysine biosynthetic process via diaminopimelate 4.17% (2/48) 10.1 1e-06 5.3e-05
GO:0006553 lysine metabolic process 4.17% (2/48) 10.1 1e-06 5.3e-05
GO:0009085 lysine biosynthetic process 4.17% (2/48) 10.1 1e-06 5.3e-05
GO:0046451 diaminopimelate metabolic process 4.17% (2/48) 10.1 1e-06 5.3e-05
GO:0043648 dicarboxylic acid metabolic process 4.17% (2/48) 8.36 1.6e-05 0.000631
GO:0009066 aspartate family amino acid metabolic process 4.17% (2/48) 7.16 9e-05 0.001764
GO:0003824 catalytic activity 27.08% (13/48) 1.73 9e-05 0.001942
GO:0008150 biological_process 31.25% (15/48) 1.57 8e-05 0.001958
GO:0009067 aspartate family amino acid biosynthetic process 4.17% (2/48) 7.29 7.5e-05 0.002094
GO:0003674 molecular_function 43.75% (21/48) 1.21 6.7e-05 0.002188
GO:0009987 cellular process 25.0% (12/48) 1.73 0.00018 0.003184
GO:0008168 methyltransferase activity 6.25% (3/48) 4.73 0.000205 0.003326
GO:0016741 transferase activity, transferring one-carbon groups 6.25% (3/48) 4.61 0.000265 0.003968
GO:1901607 alpha-amino acid biosynthetic process 4.17% (2/48) 5.96 0.000487 0.006785
GO:0047661 amino-acid racemase activity 2.08% (1/48) 10.69 0.000607 0.007395
GO:0008837 diaminopimelate epimerase activity 2.08% (1/48) 10.69 0.000607 0.007395
GO:0008652 amino acid biosynthetic process 4.17% (2/48) 5.54 0.000872 0.008953
GO:1901605 alpha-amino acid metabolic process 4.17% (2/48) 5.56 0.000848 0.009188
GO:0005975 carbohydrate metabolic process 8.33% (4/48) 3.26 0.000815 0.009347
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 2.08% (1/48) 9.69 0.001213 0.010286
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 2.08% (1/48) 9.69 0.001213 0.010286
GO:0036361 racemase activity, acting on amino acids and derivatives 2.08% (1/48) 9.69 0.001213 0.010286
GO:0030896 checkpoint clamp complex 2.08% (1/48) 9.69 0.001213 0.010286
GO:0043436 oxoacid metabolic process 6.25% (3/48) 3.74 0.001502 0.011265
GO:0019752 carboxylic acid metabolic process 6.25% (3/48) 3.74 0.001502 0.011265
GO:0000077 DNA damage checkpoint signaling 2.08% (1/48) 9.1 0.001819 0.011444
GO:0042770 signal transduction in response to DNA damage 2.08% (1/48) 9.1 0.001819 0.011444
GO:0031570 DNA integrity checkpoint signaling 2.08% (1/48) 9.1 0.001819 0.011444
GO:0055085 transmembrane transport 8.33% (4/48) 3.03 0.001452 0.011798
GO:0006082 organic acid metabolic process 6.25% (3/48) 3.68 0.001682 0.012148
GO:0016052 carbohydrate catabolic process 4.17% (2/48) 5.01 0.001787 0.012443
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 2.08% (1/48) 8.69 0.002425 0.012781
GO:1901988 negative regulation of cell cycle phase transition 2.08% (1/48) 8.69 0.002425 0.012781
GO:0045786 negative regulation of cell cycle 2.08% (1/48) 8.69 0.002425 0.012781
GO:0000075 cell cycle checkpoint signaling 2.08% (1/48) 8.69 0.002425 0.012781
GO:0010948 negative regulation of cell cycle process 2.08% (1/48) 8.69 0.002425 0.012781
GO:0046394 carboxylic acid biosynthetic process 4.17% (2/48) 4.85 0.002224 0.013551
GO:0016053 organic acid biosynthetic process 4.17% (2/48) 4.7 0.002749 0.014104
GO:0009916 alternative oxidase activity 2.08% (1/48) 8.1 0.003635 0.018177
GO:1901987 regulation of cell cycle phase transition 2.08% (1/48) 7.69 0.004844 0.02304
GO:0006396 RNA processing 4.17% (2/48) 4.29 0.004743 0.023124
GO:0006520 amino acid metabolic process 4.17% (2/48) 4.21 0.005306 0.024636
GO:0070403 NAD+ binding 2.08% (1/48) 7.52 0.005448 0.024707
GO:0051179 localization 8.33% (4/48) 2.45 0.006162 0.025035
GO:0016854 racemase and epimerase activity 2.08% (1/48) 7.36 0.006052 0.025109
GO:0008152 metabolic process 18.75% (9/48) 1.41 0.005928 0.025128
GO:0051234 establishment of localization 8.33% (4/48) 2.47 0.005866 0.025418
GO:0044283 small molecule biosynthetic process 4.17% (2/48) 4.07 0.006393 0.02544
GO:0010564 regulation of cell cycle process 2.08% (1/48) 7.23 0.006655 0.025446
GO:0016161 beta-amylase activity 2.08% (1/48) 7.23 0.006655 0.025446
GO:0006810 transport 8.33% (4/48) 2.48 0.005746 0.025467
GO:0044238 primary metabolic process 16.67% (8/48) 1.47 0.00737 0.027636
GO:0000272 polysaccharide catabolic process 2.08% (1/48) 6.99 0.00786 0.02892
GO:0042910 xenobiotic transmembrane transporter activity 2.08% (1/48) 6.88 0.008463 0.030003
GO:0016160 amylase activity 2.08% (1/48) 6.88 0.008463 0.030003
GO:0016740 transferase activity 10.42% (5/48) 1.96 0.009052 0.030967
GO:0044281 small molecule metabolic process 6.25% (3/48) 2.82 0.008951 0.031167
GO:0071704 organic substance metabolic process 16.67% (8/48) 1.39 0.010191 0.034263
GO:0016491 oxidoreductase activity 8.33% (4/48) 2.22 0.010529 0.034801
GO:0015297 antiporter activity 2.08% (1/48) 6.52 0.010868 0.035319
GO:0004743 pyruvate kinase activity 2.08% (1/48) 6.36 0.012068 0.036203
GO:0008173 RNA methyltransferase activity 2.08% (1/48) 6.36 0.012068 0.036203
GO:0030955 potassium ion binding 2.08% (1/48) 6.36 0.012068 0.036203
GO:0031420 alkali metal ion binding 2.08% (1/48) 6.36 0.012068 0.036203
GO:0008171 O-methyltransferase activity 2.08% (1/48) 6.44 0.011468 0.036659
GO:1901575 organic substance catabolic process 4.17% (2/48) 3.55 0.012823 0.037886
GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor 2.08% (1/48) 6.23 0.013267 0.038612
GO:0009056 catabolic process 4.17% (2/48) 3.5 0.013609 0.039026
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 4.17% (2/48) 3.48 0.013965 0.039466
GO:0031968 organelle outer membrane 2.08% (1/48) 6.04 0.015062 0.039691
GO:0016226 iron-sulfur cluster assembly 2.08% (1/48) 6.04 0.015062 0.039691
GO:0031163 metallo-sulfur cluster assembly 2.08% (1/48) 6.04 0.015062 0.039691
GO:0005741 mitochondrial outer membrane 2.08% (1/48) 6.04 0.015062 0.039691
GO:0015291 secondary active transmembrane transporter activity 2.08% (1/48) 6.04 0.015062 0.039691
GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors 2.08% (1/48) 5.99 0.01566 0.040181
GO:0016798 hydrolase activity, acting on glycosyl bonds 4.17% (2/48) 3.4 0.015616 0.040602
GO:0022857 transmembrane transporter activity 6.25% (3/48) 2.49 0.016376 0.040939
GO:0031072 heat shock protein binding 2.08% (1/48) 5.93 0.016258 0.041172
GO:0006139 nucleobase-containing compound metabolic process 6.25% (3/48) 2.47 0.01712 0.04173
GO:0005215 transporter activity 6.25% (3/48) 2.47 0.01692 0.041764
GO:0048523 negative regulation of cellular process 2.08% (1/48) 5.69 0.01924 0.046318
GO:0030554 adenyl nucleotide binding 8.33% (4/48) 1.95 0.019864 0.047237
GO:0046483 heterocycle metabolic process 6.25% (3/48) 2.35 0.02107 0.049502
GO:0006725 cellular aromatic compound metabolic process 6.25% (3/48) 2.34 0.021467 0.049835
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_37 0.022 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_317 0.015 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_155 0.021 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_34 0.02 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_51 0.016 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_82 0.015 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_106 0.016 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_124 0.033 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_32 0.023 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_210 0.02 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_227 0.027 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_51 0.019 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_52 0.016 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_101 0.028 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_220 0.016 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_74 0.023 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_81 0.022 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_41 0.017 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_60 0.023 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_15 0.02 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_43 0.016 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_59 0.017 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_168 0.017 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_178 0.02 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_182 0.024 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_148 0.024 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_138 0.024 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_148 0.031 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_150 0.036 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_14 0.023 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_145 0.019 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_117 0.023 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_132 0.023 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_17 0.018 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_163 0.016 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_79 0.026 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_184 0.018 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_6 0.019 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_32 0.019 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_101 0.018 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_127 0.02 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_176 0.022 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_111 0.019 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_88 0.017 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_176 0.018 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_145 0.023 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_30 0.018 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_84 0.019 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_96 0.022 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_24 0.016 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_146 0.015 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_255 0.033 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_258 0.022 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_55 0.02 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_115 0.021 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_161 0.027 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_57 0.016 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_8 0.031 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_81 0.032 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_153 0.024 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_2 0.02 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_37 0.019 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_93 0.017 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_38 0.018 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_159 0.024 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_178 0.025 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_44 0.027 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_28 0.018 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_144 0.026 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_11 0.02 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_38 0.022 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_54 0.025 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_97 0.016 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_125 0.019 OrthoFinder output from all 47 species Compare
Sequences (48) (download table)

InterPro Domains

GO Terms

Family Terms