Coexpression cluster: Cluster_194 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009536 plastid 59.72% (43/72) 2.09 0.0 0.0
GO:0009507 chloroplast 58.33% (42/72) 2.09 0.0 0.0
GO:0044444 cytoplasmic part 68.06% (49/72) 0.92 0.0 6e-06
GO:0044434 chloroplast part 20.83% (15/72) 2.24 0.0 8e-05
GO:0010027 thylakoid membrane organization 9.72% (7/72) 3.75 1e-06 8.8e-05
GO:0009668 plastid membrane organization 9.72% (7/72) 3.75 1e-06 8.8e-05
GO:0044435 plastid part 20.83% (15/72) 2.2 1e-06 9.1e-05
GO:0061024 membrane organization 9.72% (7/72) 3.66 1e-06 0.000118
GO:0009240 isopentenyl diphosphate biosynthetic process 9.72% (7/72) 3.52 3e-06 0.000161
GO:0046490 isopentenyl diphosphate metabolic process 9.72% (7/72) 3.52 3e-06 0.000161
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 9.72% (7/72) 3.55 2e-06 0.000176
GO:0009532 plastid stroma 12.5% (9/72) 2.54 2.4e-05 0.001221
GO:0009570 chloroplast stroma 12.5% (9/72) 2.54 2.4e-05 0.001221
GO:0019682 glyceraldehyde-3-phosphate metabolic process 9.72% (7/72) 3.02 2.6e-05 0.001226
GO:0042793 plastid transcription 5.56% (4/72) 4.4 3.9e-05 0.001766
GO:0008654 phospholipid biosynthetic process 9.72% (7/72) 2.79 6.9e-05 0.002898
GO:0006644 phospholipid metabolic process 9.72% (7/72) 2.71 9.9e-05 0.003915
GO:0006090 pyruvate metabolic process 9.72% (7/72) 2.68 0.00011 0.004109
GO:0016723 oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor 2.78% (2/72) 6.57 0.000189 0.004227
GO:0000293 ferric-chelate reductase activity 2.78% (2/72) 6.57 0.000189 0.004227
GO:0016722 oxidoreductase activity, oxidizing metal ions 2.78% (2/72) 6.57 0.000189 0.004227
GO:0019750 chloroplast localization 5.56% (4/72) 3.86 0.000172 0.004436
GO:0051644 plastid localization 5.56% (4/72) 3.86 0.000172 0.004436
GO:0044255 cellular lipid metabolic process 15.28% (11/72) 1.85 0.000211 0.004559
GO:0006081 cellular aldehyde metabolic process 9.72% (7/72) 2.64 0.00013 0.004575
GO:0009657 plastid organization 8.33% (6/72) 2.91 0.000151 0.004592
GO:0051656 establishment of organelle localization 5.56% (4/72) 3.83 0.000185 0.004593
GO:0051667 establishment of plastid localization 5.56% (4/72) 3.87 0.000166 0.004631
GO:0009902 chloroplast relocation 5.56% (4/72) 3.87 0.000166 0.004631
GO:0016120 carotene biosynthetic process 2.78% (2/72) 6.76 0.000142 0.004763
GO:0051186 cofactor metabolic process 13.89% (10/72) 2.04 0.00015 0.004781
GO:0008610 lipid biosynthetic process 13.89% (10/72) 1.95 0.000244 0.004817
GO:0016556 mRNA modification 5.56% (4/72) 3.73 0.000244 0.004955
GO:0042726 flavin-containing compound metabolic process 2.78% (2/72) 6.4 0.000243 0.005086
GO:0000272 polysaccharide catabolic process 4.17% (3/72) 4.57 0.000277 0.005309
GO:0034660 ncRNA metabolic process 8.33% (6/72) 2.71 0.000311 0.005805
GO:0005982 starch metabolic process 6.94% (5/72) 3.07 0.000327 0.005931
GO:0009658 chloroplast organization 6.94% (5/72) 3.02 0.000391 0.006905
GO:0016119 carotene metabolic process 2.78% (2/72) 5.99 0.000442 0.00724
GO:0006082 organic acid metabolic process 19.44% (14/72) 1.47 0.000436 0.007315
GO:0044237 cellular metabolic process 44.44% (32/72) 0.78 0.000467 0.007459
GO:0043436 oxoacid metabolic process 19.44% (14/72) 1.47 0.000434 0.007463
GO:0046246 terpene biosynthetic process 2.78% (2/72) 5.87 0.000522 0.00796
GO:0006790 sulfur compound metabolic process 11.11% (8/72) 2.11 0.000516 0.008046
GO:0000023 maltose metabolic process 5.56% (4/72) 3.32 0.0007 0.010443
GO:0009251 glucan catabolic process 2.78% (2/72) 5.48 0.000904 0.011892
GO:0005983 starch catabolic process 2.78% (2/72) 5.48 0.000904 0.011892
GO:0044247 cellular polysaccharide catabolic process 2.78% (2/72) 5.48 0.000904 0.011892
GO:0006629 lipid metabolic process 15.28% (11/72) 1.62 0.00082 0.011961
GO:0008152 metabolic process 47.22% (34/72) 0.7 0.000843 0.012032
GO:0019752 carboxylic acid metabolic process 18.06% (13/72) 1.44 0.000869 0.012141
GO:0016070 RNA metabolic process 15.28% (11/72) 1.59 0.000946 0.012204
GO:0019761 glucosinolate biosynthetic process 5.56% (4/72) 3.17 0.001039 0.012678
GO:0019758 glycosinolate biosynthetic process 5.56% (4/72) 3.17 0.001039 0.012678
GO:0016144 S-glycoside biosynthetic process 5.56% (4/72) 3.17 0.001039 0.012678
GO:0042214 terpene metabolic process 2.78% (2/72) 5.32 0.001133 0.013572
GO:1901659 glycosyl compound biosynthetic process 5.56% (4/72) 3.1 0.001259 0.013622
GO:0006351 transcription, DNA-templated 5.56% (4/72) 3.1 0.001233 0.013787
GO:0051640 organelle localization 5.56% (4/72) 3.1 0.001233 0.013787
GO:0010207 photosystem II assembly 5.56% (4/72) 3.1 0.001233 0.013787
GO:0097659 nucleic acid-templated transcription 5.56% (4/72) 3.1 0.001233 0.013787
GO:0003824 catalytic activity 41.67% (30/72) 0.75 0.001258 0.013835
GO:0044281 small molecule metabolic process 22.22% (16/72) 1.17 0.001523 0.015968
GO:0019252 starch biosynthetic process 5.56% (4/72) 3.02 0.001509 0.01607
GO:0044272 sulfur compound biosynthetic process 8.33% (6/72) 2.26 0.001569 0.016202
GO:0005984 disaccharide metabolic process 5.56% (4/72) 2.98 0.001694 0.017218
GO:0005345 purine nucleobase transmembrane transporter activity 2.78% (2/72) 4.99 0.001813 0.018154
GO:0045436 lycopene beta cyclase activity 1.39% (1/72) 8.57 0.002629 0.018189
GO:0010028 xanthophyll cycle 1.39% (1/72) 8.57 0.002629 0.018189
GO:0071266 'de novo' L-methionine biosynthetic process 1.39% (1/72) 8.57 0.002629 0.018189
GO:0009661 chromoplast organization 1.39% (1/72) 8.57 0.002629 0.018189
GO:0009092 homoserine metabolic process 1.39% (1/72) 8.57 0.002629 0.018189
GO:0010303 limit dextrinase activity 1.39% (1/72) 8.57 0.002629 0.018189
GO:0004852 uroporphyrinogen-III synthase activity 1.39% (1/72) 8.57 0.002629 0.018189
GO:0051060 pullulanase activity 1.39% (1/72) 8.57 0.002629 0.018189
GO:0046422 violaxanthin de-epoxidase activity 1.39% (1/72) 8.57 0.002629 0.018189
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine 1.39% (1/72) 8.57 0.002629 0.018189
GO:0046502 uroporphyrinogen III metabolic process 1.39% (1/72) 8.57 0.002629 0.018189
GO:0010349 L-galactose dehydrogenase activity 1.39% (1/72) 8.57 0.002629 0.018189
GO:0047884 FAD diphosphatase activity 1.39% (1/72) 8.57 0.002629 0.018189
GO:0006780 uroporphyrinogen III biosynthetic process 1.39% (1/72) 8.57 0.002629 0.018189
GO:0033494 ferulate metabolic process 1.39% (1/72) 8.57 0.002629 0.018189
GO:0090407 organophosphate biosynthetic process 11.11% (8/72) 1.74 0.002658 0.0182
GO:0019760 glucosinolate metabolic process 5.56% (4/72) 2.91 0.001999 0.018633
GO:0019757 glycosinolate metabolic process 5.56% (4/72) 2.91 0.001999 0.018633
GO:0033013 tetrapyrrole metabolic process 5.56% (4/72) 2.91 0.001999 0.018633
GO:0016143 S-glycoside metabolic process 5.56% (4/72) 2.91 0.001999 0.018633
GO:0006778 porphyrin-containing compound metabolic process 5.56% (4/72) 2.93 0.001928 0.019028
GO:0044275 cellular carbohydrate catabolic process 2.78% (2/72) 4.87 0.002127 0.019553
GO:1901135 carbohydrate derivative metabolic process 12.5% (9/72) 1.64 0.002315 0.019912
GO:0031976 plastid thylakoid 5.56% (4/72) 2.84 0.002382 0.019978
GO:0009534 chloroplast thylakoid 5.56% (4/72) 2.84 0.002382 0.019978
GO:0009311 oligosaccharide metabolic process 5.56% (4/72) 2.86 0.002302 0.020057
GO:0006766 vitamin metabolic process 4.17% (3/72) 3.54 0.002217 0.020103
GO:0016226 iron-sulfur cluster assembly 4.17% (3/72) 3.53 0.002282 0.020148
GO:0031163 metallo-sulfur cluster assembly 4.17% (3/72) 3.53 0.002282 0.020148
GO:0044042 glucan metabolic process 6.94% (5/72) 2.35 0.003028 0.020317
GO:0006073 cellular glucan metabolic process 6.94% (5/72) 2.35 0.003028 0.020317
GO:1901576 organic substance biosynthetic process 27.78% (20/72) 0.94 0.002494 0.020406
GO:0015205 nucleobase transmembrane transporter activity 2.78% (2/72) 4.76 0.002466 0.020426
GO:0006364 rRNA processing 5.56% (4/72) 2.71 0.003344 0.022213
GO:1901657 glycosyl compound metabolic process 5.56% (4/72) 2.68 0.003606 0.023046
GO:0043085 positive regulation of catalytic activity 4.17% (3/72) 3.3 0.003572 0.023047
GO:0016072 rRNA metabolic process 5.56% (4/72) 2.68 0.003553 0.023144
GO:0009058 biosynthetic process 27.78% (20/72) 0.9 0.003549 0.023349
GO:0044093 positive regulation of molecular function 4.17% (3/72) 3.27 0.003748 0.023724
GO:0046483 heterocycle metabolic process 22.22% (16/72) 1.01 0.00467 0.029283
GO:0051187 cofactor catabolic process 4.17% (3/72) 3.13 0.004912 0.030517
GO:0004121 cystathionine beta-lyase activity 1.39% (1/72) 7.57 0.005252 0.030914
GO:0004856 xylulokinase activity 1.39% (1/72) 7.57 0.005252 0.030914
GO:0005363 maltose transmembrane transporter activity 1.39% (1/72) 7.57 0.005252 0.030914
GO:0016491 oxidoreductase activity 11.11% (8/72) 1.58 0.0051 0.031393
GO:0042364 water-soluble vitamin biosynthetic process 2.78% (2/72) 4.21 0.005232 0.03163
GO:0044249 cellular biosynthetic process 25.0% (18/72) 0.91 0.005198 0.031711
GO:0034470 ncRNA processing 5.56% (4/72) 2.5 0.005483 0.03199
GO:0090304 nucleic acid metabolic process 16.67% (12/72) 1.19 0.005676 0.032555
GO:0019748 secondary metabolic process 8.33% (6/72) 1.89 0.005633 0.032587
GO:0006767 water-soluble vitamin metabolic process 2.78% (2/72) 4.14 0.005743 0.032655
GO:0035304 regulation of protein dephosphorylation 4.17% (3/72) 3.03 0.006031 0.033725
GO:0035303 regulation of dephosphorylation 4.17% (3/72) 3.02 0.006151 0.03383
GO:0044446 intracellular organelle part 22.22% (16/72) 0.97 0.006011 0.033896
GO:0044422 organelle part 22.22% (16/72) 0.97 0.006143 0.034063
GO:0009706 chloroplast inner membrane 2.78% (2/72) 4.08 0.006275 0.034229
GO:0009250 glucan biosynthetic process 5.56% (4/72) 2.43 0.006547 0.035427
GO:0019216 regulation of lipid metabolic process 2.78% (2/72) 4.02 0.006828 0.036653
GO:0009528 plastid inner membrane 2.78% (2/72) 3.99 0.007113 0.037879
GO:0018904 ether metabolic process 1.39% (1/72) 6.99 0.007868 0.039695
GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity 1.39% (1/72) 6.99 0.007868 0.039695
GO:0031304 intrinsic component of mitochondrial inner membrane 1.39% (1/72) 6.99 0.007868 0.039695
GO:0004829 threonine-tRNA ligase activity 1.39% (1/72) 6.99 0.007868 0.039695
GO:0006435 threonyl-tRNA aminoacylation 1.39% (1/72) 6.99 0.007868 0.039695
GO:0003935 GTP cyclohydrolase II activity 1.39% (1/72) 6.99 0.007868 0.039695
GO:1901360 organic cyclic compound metabolic process 23.61% (17/72) 0.89 0.007985 0.039985
GO:0034641 cellular nitrogen compound metabolic process 22.22% (16/72) 0.92 0.008142 0.040467
GO:0008299 isoprenoid biosynthetic process 5.56% (4/72) 2.36 0.00774 0.040896
GO:0042440 pigment metabolic process 5.56% (4/72) 2.33 0.008387 0.04108
GO:0032774 RNA biosynthetic process 5.56% (4/72) 2.33 0.008387 0.04108
GO:0015996 chlorophyll catabolic process 2.78% (2/72) 3.79 0.009254 0.043728
GO:0006787 porphyrin-containing compound catabolic process 2.78% (2/72) 3.79 0.009254 0.043728
GO:0033015 tetrapyrrole catabolic process 2.78% (2/72) 3.79 0.009254 0.043728
GO:0046149 pigment catabolic process 2.78% (2/72) 3.79 0.009254 0.043728
GO:0044550 secondary metabolite biosynthetic process 5.56% (4/72) 2.29 0.009069 0.044097
GO:0009110 vitamin biosynthetic process 2.78% (2/72) 3.74 0.009912 0.046511
GO:0030026 cellular manganese ion homeostasis 1.39% (1/72) 6.57 0.010477 0.047182
GO:0003933 GTP cyclohydrolase activity 1.39% (1/72) 6.57 0.010477 0.047182
GO:0015369 calcium:proton antiporter activity 1.39% (1/72) 6.57 0.010477 0.047182
GO:0006720 isoprenoid metabolic process 5.56% (4/72) 2.24 0.010212 0.047256
GO:0019637 organophosphate metabolic process 11.11% (8/72) 1.41 0.010188 0.047474
GO:0009451 RNA modification 5.56% (4/72) 2.23 0.010649 0.047639
GO:0015994 chlorophyll metabolic process 4.17% (3/72) 2.74 0.010415 0.047865
GO:0009579 thylakoid 5.56% (4/72) 2.22 0.010873 0.048315
GO:0043231 intracellular membrane-bounded organelle 75.0% (54/72) 0.29 0.010957 0.048368
GO:0006098 pentose-phosphate shunt 4.17% (3/72) 2.7 0.011256 0.049364
GO:0006725 cellular aromatic compound metabolic process 22.22% (16/72) 0.87 0.011524 0.049888
GO:0043227 membrane-bounded organelle 75.0% (54/72) 0.28 0.011451 0.049894
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_1 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_124 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_134 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_148 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_173 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_185 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_206 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_235 0.023 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_38 0.018 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_106 0.018 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_122 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_167 0.018 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_16 0.028 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_72 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_78 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_96 0.014 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_142 0.024 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_144 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_161 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_165 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_27 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_36 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_40 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_54 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_74 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_80 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_126 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_147 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_153 0.029 Gene family Compare
Oryza sativa HCCA cluster Cluster_159 0.033 Gene family Compare
Oryza sativa HCCA cluster Cluster_173 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_210 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_223 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_259 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_291 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_299 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_323 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_327 0.034 Gene family Compare
Picea abies HCCA cluster Cluster_25 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_122 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_125 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_182 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_194 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_199 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_202 0.021 Gene family Compare
Picea abies HCCA cluster Cluster_219 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_332 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_403 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_478 0.031 Gene family Compare
Picea abies HCCA cluster Cluster_492 0.022 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_11 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_43 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_87 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_97 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_101 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_149 0.021 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_17 0.036 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_85 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.025 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_103 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_125 0.022 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_185 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_214 0.048 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_219 0.024 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_239 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_245 0.041 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_246 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_273 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_280 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_307 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_2 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_50 0.027 Gene family Compare
Vitis vinifera HCCA cluster Cluster_55 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_63 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_116 0.023 Gene family Compare
Vitis vinifera HCCA cluster Cluster_120 0.028 Gene family Compare
Vitis vinifera HCCA cluster Cluster_139 0.032 Gene family Compare
Vitis vinifera HCCA cluster Cluster_145 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_159 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_160 0.021 Gene family Compare
Vitis vinifera HCCA cluster Cluster_180 0.049 Gene family Compare
Vitis vinifera HCCA cluster Cluster_197 0.022 Gene family Compare
Vitis vinifera HCCA cluster Cluster_212 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_56 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_118 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_132 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_143 0.043 Gene family Compare
Zea mays HCCA cluster Cluster_163 0.03 Gene family Compare
Zea mays HCCA cluster Cluster_165 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_210 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_222 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_246 0.041 Gene family Compare
Zea mays HCCA cluster Cluster_282 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_291 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_313 0.028 Gene family Compare
Zea mays HCCA cluster Cluster_325 0.015 Gene family Compare
Sequences (72) (download table)

InterPro Domains

GO Terms

Family Terms