Coexpression cluster: Cluster_47 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044427 chromosomal part 14.51% (28/193) 5.78 0.0 0.0
GO:0044815 DNA packaging complex 11.92% (23/193) 5.96 0.0 0.0
GO:0032993 protein-DNA complex 11.92% (23/193) 5.96 0.0 0.0
GO:0000786 nucleosome 11.92% (23/193) 5.98 0.0 0.0
GO:0044422 organelle part 14.51% (28/193) 3.85 0.0 0.0
GO:0044446 intracellular organelle part 14.51% (28/193) 3.85 0.0 0.0
GO:0006259 DNA metabolic process 10.36% (20/193) 4.9 0.0 0.0
GO:0044464 cell part 23.32% (45/193) 2.55 0.0 0.0
GO:0044424 intracellular part 22.8% (44/193) 2.59 0.0 0.0
GO:0003677 DNA binding 18.65% (36/193) 2.76 0.0 0.0
GO:0003676 nucleic acid binding 22.28% (43/193) 2.2 0.0 0.0
GO:0006270 DNA replication initiation 3.63% (7/193) 7.3 0.0 0.0
GO:0032991 protein-containing complex 15.03% (29/193) 2.63 0.0 0.0
GO:0090304 nucleic acid metabolic process 10.88% (21/193) 2.92 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 11.92% (23/193) 2.68 0.0 0.0
GO:0097159 organic cyclic compound binding 30.05% (58/193) 1.39 0.0 0.0
GO:1901363 heterocyclic compound binding 30.05% (58/193) 1.39 0.0 0.0
GO:0046483 heterocycle metabolic process 11.92% (23/193) 2.55 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 11.92% (23/193) 2.55 0.0 0.0
GO:0005634 nucleus 8.29% (16/193) 3.26 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 11.92% (23/193) 2.51 0.0 0.0
GO:0005575 cellular_component 23.32% (45/193) 1.57 0.0 0.0
GO:0006260 DNA replication 3.63% (7/193) 5.72 0.0 0.0
GO:0043227 membrane-bounded organelle 8.29% (16/193) 2.86 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 8.29% (16/193) 2.86 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 11.92% (23/193) 2.02 0.0 0.0
GO:0005488 binding 35.75% (69/193) 0.86 0.0 1e-06
GO:0005524 ATP binding 12.44% (24/193) 1.79 0.0 1e-06
GO:0043226 organelle 9.33% (18/193) 2.17 0.0 1e-06
GO:0043229 intracellular organelle 9.33% (18/193) 2.17 0.0 1e-06
GO:0009987 cellular process 22.28% (43/193) 1.17 0.0 2e-06
GO:0008144 drug binding 12.44% (24/193) 1.66 1e-06 5e-06
GO:0035639 purine ribonucleoside triphosphate binding 12.44% (24/193) 1.57 2e-06 1.5e-05
GO:0032559 adenyl ribonucleotide binding 12.44% (24/193) 1.56 2e-06 1.7e-05
GO:0030554 adenyl nucleotide binding 12.44% (24/193) 1.56 2e-06 1.7e-05
GO:0044260 cellular macromolecule metabolic process 13.99% (27/193) 1.44 3e-06 1.7e-05
GO:0097367 carbohydrate derivative binding 12.95% (25/193) 1.41 9e-06 6e-05
GO:0032555 purine ribonucleotide binding 12.44% (24/193) 1.37 2e-05 0.000132
GO:0017076 purine nucleotide binding 12.44% (24/193) 1.36 2.2e-05 0.000142
GO:0032553 ribonucleotide binding 12.44% (24/193) 1.36 2.3e-05 0.000142
GO:0006275 regulation of DNA replication 1.04% (2/193) 7.5 3e-05 0.000176
GO:0006269 DNA replication, synthesis of RNA primer 1.04% (2/193) 7.5 3e-05 0.000176
GO:0003896 DNA primase activity 1.04% (2/193) 7.5 3e-05 0.000176
GO:0033554 cellular response to stress 2.59% (5/193) 3.59 6.2e-05 0.000335
GO:0006974 cellular response to DNA damage stimulus 2.59% (5/193) 3.59 6.2e-05 0.000335
GO:0051716 cellular response to stimulus 2.59% (5/193) 3.59 6.2e-05 0.000335
GO:0051301 cell division 1.04% (2/193) 6.91 9.1e-05 0.00048
GO:0036094 small molecule binding 12.95% (25/193) 1.2 9.5e-05 0.000491
GO:0000166 nucleotide binding 12.44% (24/193) 1.23 0.0001 0.000494
GO:1901265 nucleoside phosphate binding 12.44% (24/193) 1.23 0.0001 0.000494
GO:0006325 chromatin organization 2.07% (4/193) 3.91 0.000146 0.000711
GO:0007059 chromosome segregation 1.04% (2/193) 6.5 0.000181 0.000865
GO:0043168 anion binding 12.44% (24/193) 1.17 0.000185 0.000867
GO:0006807 nitrogen compound metabolic process 15.03% (29/193) 1.02 0.000223 0.001023
GO:0043170 macromolecule metabolic process 13.99% (27/193) 1.05 0.000276 0.001246
GO:0006334 nucleosome assembly 1.55% (3/193) 4.44 0.000351 0.001553
GO:0065004 protein-DNA complex assembly 1.55% (3/193) 4.38 0.000395 0.001688
GO:0034728 nucleosome organization 1.55% (3/193) 4.38 0.000395 0.001688
GO:0008026 ATP-dependent helicase activity 1.04% (2/193) 5.91 0.00045 0.001831
GO:0070035 purine NTP-dependent helicase activity 1.04% (2/193) 5.91 0.00045 0.001831
GO:0071824 protein-DNA complex subunit organization 1.55% (3/193) 4.33 0.000442 0.00186
GO:0008017 microtubule binding 2.07% (4/193) 3.45 0.000501 0.002004
GO:0004518 nuclease activity 2.59% (5/193) 2.92 0.00054 0.002126
GO:0006281 DNA repair 2.07% (4/193) 3.39 0.000593 0.002299
GO:0051276 chromosome organization 1.55% (3/193) 4.18 0.000607 0.002314
GO:0044237 cellular metabolic process 15.03% (29/193) 0.92 0.000655 0.002425
GO:0016043 cellular component organization 3.63% (7/193) 2.28 0.000646 0.002426
GO:0015631 tubulin binding 2.07% (4/193) 3.31 0.000734 0.002677
GO:0006310 DNA recombination 1.04% (2/193) 5.5 0.000834 0.002956
GO:0051052 regulation of DNA metabolic process 1.04% (2/193) 5.5 0.000834 0.002956
GO:0071840 cellular component organization or biogenesis 3.63% (7/193) 2.2 0.000915 0.003197
GO:0005694 chromosome 1.04% (2/193) 5.33 0.001069 0.003631
GO:0003887 DNA-directed DNA polymerase activity 1.04% (2/193) 5.33 0.001069 0.003631
GO:0034061 DNA polymerase activity 1.04% (2/193) 5.04 0.001621 0.005433
GO:0044454 nuclear chromosome part 1.04% (2/193) 4.91 0.001938 0.00641
GO:0009059 macromolecule biosynthetic process 4.66% (9/193) 1.68 0.002175 0.007097
GO:0008092 cytoskeletal protein binding 2.07% (4/193) 2.8 0.002716 0.008747
GO:0016779 nucleotidyltransferase activity 2.07% (4/193) 2.64 0.004018 0.012774
GO:0006996 organelle organization 1.55% (3/193) 3.2 0.004319 0.013558
GO:0048478 replication fork protection 0.52% (1/193) 7.5 0.005533 0.013862
GO:0008156 negative regulation of DNA replication 0.52% (1/193) 7.5 0.005533 0.013862
GO:0032299 ribonuclease H2 complex 0.52% (1/193) 7.5 0.005533 0.013862
GO:0099513 polymeric cytoskeletal fiber 0.52% (1/193) 7.5 0.005533 0.013862
GO:0000444 MIS12/MIND type complex 0.52% (1/193) 7.5 0.005533 0.013862
GO:0000725 recombinational repair 0.52% (1/193) 7.5 0.005533 0.013862
GO:0099080 supramolecular complex 0.52% (1/193) 7.5 0.005533 0.013862
GO:0099512 supramolecular fiber 0.52% (1/193) 7.5 0.005533 0.013862
GO:0099081 supramolecular polymer 0.52% (1/193) 7.5 0.005533 0.013862
GO:0045005 DNA-dependent DNA replication maintenance of fidelity 0.52% (1/193) 7.5 0.005533 0.013862
GO:0090329 regulation of DNA-dependent DNA replication 0.52% (1/193) 7.5 0.005533 0.013862
GO:0000940 condensed chromosome outer kinetochore 0.52% (1/193) 7.5 0.005533 0.013862
GO:2000104 negative regulation of DNA-dependent DNA replication 0.52% (1/193) 7.5 0.005533 0.013862
GO:0000724 double-strand break repair via homologous recombination 0.52% (1/193) 7.5 0.005533 0.013862
GO:0051053 negative regulation of DNA metabolic process 0.52% (1/193) 7.5 0.005533 0.013862
GO:0005874 microtubule 0.52% (1/193) 7.5 0.005533 0.013862
GO:0000818 nuclear MIS12/MIND complex 0.52% (1/193) 7.5 0.005533 0.013862
GO:0005876 spindle microtubule 0.52% (1/193) 7.5 0.005533 0.013862
GO:0034622 cellular protein-containing complex assembly 1.55% (3/193) 3.11 0.005191 0.016093
GO:0044238 primary metabolic process 15.03% (29/193) 0.72 0.00526 0.016106
GO:0065003 protein-containing complex assembly 1.55% (3/193) 2.91 0.007519 0.018647
GO:0071704 organic substance metabolic process 15.03% (29/193) 0.65 0.009672 0.023749
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 0.52% (1/193) 6.5 0.011036 0.02511
GO:0009890 negative regulation of biosynthetic process 0.52% (1/193) 6.5 0.011036 0.02511
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 0.52% (1/193) 6.5 0.011036 0.02511
GO:0010558 negative regulation of macromolecule biosynthetic process 0.52% (1/193) 6.5 0.011036 0.02511
GO:0005664 nuclear origin of replication recognition complex 0.52% (1/193) 6.5 0.011036 0.02511
GO:0031327 negative regulation of cellular biosynthetic process 0.52% (1/193) 6.5 0.011036 0.02511
GO:0031390 Ctf18 RFC-like complex 0.52% (1/193) 6.5 0.011036 0.02511
GO:0043933 protein-containing complex subunit organization 1.55% (3/193) 2.74 0.010375 0.025225
GO:0022607 cellular component assembly 1.55% (3/193) 2.62 0.012974 0.029251
GO:0000278 mitotic cell cycle 0.52% (1/193) 5.91 0.016509 0.034119
GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor 0.52% (1/193) 5.91 0.016509 0.034119
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor 0.52% (1/193) 5.91 0.016509 0.034119
GO:0006333 chromatin assembly or disassembly 0.52% (1/193) 5.91 0.016509 0.034119
GO:0031324 negative regulation of cellular metabolic process 0.52% (1/193) 5.91 0.016509 0.034119
GO:0051172 negative regulation of nitrogen compound metabolic process 0.52% (1/193) 5.91 0.016509 0.034119
GO:0061731 ribonucleoside-diphosphate reductase activity 0.52% (1/193) 5.91 0.016509 0.034119
GO:0007062 sister chromatid cohesion 0.52% (1/193) 5.91 0.016509 0.034119
GO:0006302 double-strand break repair 0.52% (1/193) 5.91 0.016509 0.034119
GO:0007064 mitotic sister chromatid cohesion 0.52% (1/193) 5.91 0.016509 0.034119
GO:0034645 cellular macromolecule biosynthetic process 3.63% (7/193) 1.41 0.017034 0.034626
GO:0004386 helicase activity 1.04% (2/193) 3.33 0.016962 0.034764
GO:0007049 cell cycle 0.52% (1/193) 5.5 0.021952 0.04426
GO:0006950 response to stress 2.59% (5/193) 1.61 0.024556 0.049111
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_15 0.171 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_39 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_52 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_53 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_82 0.03 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_97 0.038 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_117 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_126 0.064 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_163 0.031 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_187 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_196 0.026 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_199 0.031 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_200 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_204 0.051 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_236 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_249 0.085 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_250 0.019 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_40 0.034 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_49 0.04 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_114 0.062 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_119 0.014 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_126 0.019 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_156 0.018 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_25 0.08 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_55 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_75 0.045 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_85 0.026 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_95 0.067 Gene family Compare
Oryza sativa HCCA cluster Cluster_2 0.026 Gene family Compare
Oryza sativa HCCA cluster Cluster_52 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_65 0.023 Gene family Compare
Oryza sativa HCCA cluster Cluster_78 0.128 Gene family Compare
Oryza sativa HCCA cluster Cluster_96 0.022 Gene family Compare
Oryza sativa HCCA cluster Cluster_123 0.051 Gene family Compare
Oryza sativa HCCA cluster Cluster_145 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_151 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_177 0.032 Gene family Compare
Oryza sativa HCCA cluster Cluster_199 0.036 Gene family Compare
Oryza sativa HCCA cluster Cluster_224 0.089 Gene family Compare
Oryza sativa HCCA cluster Cluster_237 0.051 Gene family Compare
Oryza sativa HCCA cluster Cluster_256 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_27 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_76 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_87 0.085 Gene family Compare
Picea abies HCCA cluster Cluster_118 0.041 Gene family Compare
Picea abies HCCA cluster Cluster_136 0.025 Gene family Compare
Picea abies HCCA cluster Cluster_164 0.023 Gene family Compare
Picea abies HCCA cluster Cluster_180 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_200 0.062 Gene family Compare
Picea abies HCCA cluster Cluster_258 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_288 0.103 Gene family Compare
Picea abies HCCA cluster Cluster_289 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_293 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_344 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_353 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_375 0.029 Gene family Compare
Picea abies HCCA cluster Cluster_384 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_406 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_429 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_479 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_8 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_41 0.036 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_66 0.029 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_67 0.022 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_109 0.04 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_113 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_127 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_152 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_170 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_128 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_232 0.029 Gene family Compare
Vitis vinifera HCCA cluster Cluster_39 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_42 0.2 Gene family Compare
Vitis vinifera HCCA cluster Cluster_85 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_88 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_92 0.071 Gene family Compare
Vitis vinifera HCCA cluster Cluster_96 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_122 0.036 Gene family Compare
Vitis vinifera HCCA cluster Cluster_158 0.082 Gene family Compare
Vitis vinifera HCCA cluster Cluster_172 0.022 Gene family Compare
Vitis vinifera HCCA cluster Cluster_215 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_37 0.225 Gene family Compare
Zea mays HCCA cluster Cluster_51 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_56 0.048 Gene family Compare
Zea mays HCCA cluster Cluster_129 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_148 0.029 Gene family Compare
Zea mays HCCA cluster Cluster_162 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_164 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_183 0.046 Gene family Compare
Zea mays HCCA cluster Cluster_188 0.054 Gene family Compare
Zea mays HCCA cluster Cluster_193 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_286 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_288 0.031 Gene family Compare
Zea mays HCCA cluster Cluster_328 0.023 Gene family Compare
Zea mays HCCA cluster Cluster_352 0.02 Gene family Compare
Sequences (193) (download table)

InterPro Domains

GO Terms

Family Terms