Coexpression cluster: Cluster_89 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 37.59% (50/133) 0.99 0.0 2.7e-05
GO:0051603 proteolysis involved in protein catabolic process 4.51% (6/133) 4.49 0.0 3.4e-05
GO:0008150 biological_process 26.32% (35/133) 1.32 0.0 3.9e-05
GO:1902494 catalytic complex 6.02% (8/133) 3.8 0.0 4.2e-05
GO:0140535 intracellular protein-containing complex 3.76% (5/133) 4.72 2e-06 9.3e-05
GO:0005839 proteasome core complex 3.01% (4/133) 5.43 2e-06 0.000126
GO:0032991 protein-containing complex 7.52% (10/133) 2.71 4e-06 0.00016
GO:0019346 transsulfuration 1.5% (2/133) 7.22 7.8e-05 0.002411
GO:0050667 homocysteine metabolic process 1.5% (2/133) 7.22 7.8e-05 0.002411
GO:0009092 homoserine metabolic process 1.5% (2/133) 7.22 7.8e-05 0.002411
GO:0030695 GTPase regulator activity 2.26% (3/133) 5.07 0.000102 0.002433
GO:0060589 nucleoside-triphosphatase regulator activity 2.26% (3/133) 5.07 0.000102 0.002433
GO:0043167 ion binding 13.53% (18/133) 1.47 8.7e-05 0.002457
GO:0030234 enzyme regulator activity 3.01% (4/133) 4.04 0.000112 0.002478
GO:0005488 binding 21.8% (29/133) 1.03 0.00014 0.002544
GO:0006508 proteolysis 4.51% (6/133) 2.98 0.000125 0.00258
GO:0016817 hydrolase activity, acting on acid anhydrides 5.26% (7/133) 2.59 0.000184 0.00259
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.26% (7/133) 2.66 0.000136 0.00262
GO:0006534 cysteine metabolic process 1.5% (2/133) 6.63 0.000183 0.002695
GO:0005575 cellular_component 13.53% (18/133) 1.4 0.000164 0.002822
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.26% (7/133) 2.59 0.000183 0.002824
GO:0016462 pyrophosphatase activity 5.26% (7/133) 2.6 0.000178 0.002895
GO:0140677 molecular function activator activity 2.26% (3/133) 4.67 0.000234 0.003147
GO:0019773 proteasome core complex, alpha-subunit complex 1.5% (2/133) 6.31 0.00029 0.003324
GO:0009069 serine family amino acid metabolic process 1.5% (2/133) 6.31 0.00029 0.003324
GO:0098772 molecular function regulator activity 3.01% (4/133) 3.71 0.000268 0.00345
GO:0050789 regulation of biological process 6.02% (8/133) 2.27 0.000282 0.003488
GO:0065007 biological regulation 6.02% (8/133) 2.23 0.000333 0.003677
GO:0036094 small molecule binding 9.77% (13/133) 1.59 0.000405 0.00432
GO:0008152 metabolic process 15.79% (21/133) 1.16 0.000438 0.004515
GO:0097159 organic cyclic compound binding 14.29% (19/133) 1.19 0.000624 0.00603
GO:1901363 heterocyclic compound binding 14.29% (19/133) 1.19 0.000624 0.00603
GO:0043168 anion binding 9.02% (12/133) 1.59 0.000713 0.006681
GO:0000096 sulfur amino acid metabolic process 1.5% (2/133) 5.57 0.000821 0.007458
GO:0005092 GDP-dissociation inhibitor activity 1.5% (2/133) 5.52 0.000888 0.007622
GO:1904949 ATPase complex 1.5% (2/133) 5.52 0.000888 0.007622
GO:0005737 cytoplasm 2.26% (3/133) 3.99 0.000926 0.007736
GO:0007264 small GTPase mediated signal transduction 1.5% (2/133) 5.41 0.001031 0.008165
GO:0009987 cellular process 15.79% (21/133) 1.07 0.001007 0.00819
GO:0050794 regulation of cellular process 5.26% (7/133) 2.13 0.001208 0.008888
GO:0051171 regulation of nitrogen compound metabolic process 4.51% (6/133) 2.36 0.001194 0.009
GO:0080090 regulation of primary metabolic process 4.51% (6/133) 2.36 0.001194 0.009
GO:0060255 regulation of macromolecule metabolic process 4.51% (6/133) 2.32 0.001379 0.00991
GO:0019222 regulation of metabolic process 4.51% (6/133) 2.31 0.001439 0.010103
GO:0071704 organic substance metabolic process 13.53% (18/133) 1.09 0.001963 0.013481
GO:0003824 catalytic activity 15.79% (21/133) 0.95 0.002662 0.017502
GO:0006355 regulation of DNA-templated transcription 3.76% (5/133) 2.37 0.00299 0.01777
GO:1903506 regulation of nucleic acid-templated transcription 3.76% (5/133) 2.37 0.00299 0.01777
GO:2001141 regulation of RNA biosynthetic process 3.76% (5/133) 2.37 0.00299 0.01777
GO:0051252 regulation of RNA metabolic process 3.76% (5/133) 2.36 0.003057 0.017825
GO:0044238 primary metabolic process 12.78% (17/133) 1.09 0.002655 0.017836
GO:0035639 purine ribonucleoside triphosphate binding 7.52% (10/133) 1.48 0.003382 0.01802
GO:0006520 amino acid metabolic process 2.26% (3/133) 3.33 0.003465 0.018149
GO:0009894 regulation of catabolic process 0.75% (1/133) 8.22 0.00336 0.018214
GO:0000502 proteasome complex 0.75% (1/133) 8.22 0.00336 0.018214
GO:0042176 regulation of protein catabolic process 0.75% (1/133) 8.22 0.00336 0.018214
GO:0019219 regulation of nucleobase-containing compound metabolic process 3.76% (5/133) 2.34 0.003265 0.01868
GO:1901265 nucleoside phosphate binding 8.27% (11/133) 1.41 0.002987 0.018836
GO:0000166 nucleotide binding 8.27% (11/133) 1.41 0.002987 0.018836
GO:0032555 purine ribonucleotide binding 7.52% (10/133) 1.45 0.003939 0.020284
GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity 1.5% (2/133) 4.31 0.004659 0.020864
GO:0046961 proton-transporting ATPase activity, rotational mechanism 1.5% (2/133) 4.31 0.004659 0.020864
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism 1.5% (2/133) 4.31 0.004659 0.020864
GO:0042625 ATPase-coupled ion transmembrane transporter activity 1.5% (2/133) 4.31 0.004659 0.020864
GO:0032553 ribonucleotide binding 7.52% (10/133) 1.43 0.00425 0.021526
GO:0009889 regulation of biosynthetic process 3.76% (5/133) 2.23 0.004574 0.021746
GO:0010556 regulation of macromolecule biosynthetic process 3.76% (5/133) 2.23 0.004574 0.021746
GO:0031326 regulation of cellular biosynthetic process 3.76% (5/133) 2.23 0.004574 0.021746
GO:0016787 hydrolase activity 6.77% (9/133) 1.5 0.004957 0.021882
GO:0097367 carbohydrate derivative binding 7.52% (10/133) 1.42 0.004537 0.022613
GO:0010468 regulation of gene expression 3.76% (5/133) 2.18 0.005203 0.022646
GO:0016887 ATP hydrolysis activity 2.26% (3/133) 3.1 0.005344 0.022937
GO:1901564 organonitrogen compound metabolic process 9.77% (13/133) 1.17 0.005533 0.023419
GO:0031011 Ino80 complex 0.75% (1/133) 7.22 0.006709 0.02624
GO:0070603 SWI/SNF superfamily-type complex 0.75% (1/133) 7.22 0.006709 0.02624
GO:0097346 INO80-type complex 0.75% (1/133) 7.22 0.006709 0.02624
GO:1901605 alpha-amino acid metabolic process 1.5% (2/133) 4.09 0.006288 0.026255
GO:0017076 purine nucleotide binding 7.52% (10/133) 1.34 0.006489 0.026381
GO:0031323 regulation of cellular metabolic process 3.76% (5/133) 2.08 0.006839 0.026415
GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity 1.5% (2/133) 4.07 0.006463 0.026626
GO:0003924 GTPase activity 3.01% (4/133) 2.4 0.007236 0.027603
GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 0.75% (1/133) 6.89 0.008379 0.029421
GO:1905369 endopeptidase complex 0.75% (1/133) 6.89 0.008379 0.029421
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity 0.75% (1/133) 6.89 0.008379 0.029421
GO:0016229 steroid dehydrogenase activity 0.75% (1/133) 6.89 0.008379 0.029421
GO:0120013 lipid transfer activity 0.75% (1/133) 6.89 0.008379 0.029421
GO:0120009 intermembrane lipid transfer 0.75% (1/133) 6.89 0.008379 0.029421
GO:0006807 nitrogen compound metabolic process 10.53% (14/133) 1.05 0.008017 0.03021
GO:0030170 pyridoxal phosphate binding 1.5% (2/133) 3.81 0.009143 0.031392
GO:0070279 vitamin B6 binding 1.5% (2/133) 3.81 0.009143 0.031392
GO:0022853 active monoatomic ion transmembrane transporter activity 1.5% (2/133) 3.77 0.00956 0.032463
GO:0006790 sulfur compound metabolic process 1.5% (2/133) 3.66 0.011085 0.037232
GO:0043632 modification-dependent macromolecule catabolic process 1.5% (2/133) 3.52 0.013436 0.042365
GO:0006511 ubiquitin-dependent protein catabolic process 1.5% (2/133) 3.52 0.013436 0.042365
GO:0019941 modification-dependent protein catabolic process 1.5% (2/133) 3.52 0.013436 0.042365
GO:0019842 vitamin binding 1.5% (2/133) 3.54 0.01295 0.043027
GO:0006694 steroid biosynthetic process 0.75% (1/133) 6.22 0.013373 0.043496
GO:0008202 steroid metabolic process 0.75% (1/133) 6.22 0.013373 0.043496
GO:0016043 cellular component organization 2.26% (3/133) 2.58 0.014283 0.044581
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_111 0.006 OrthoFinder output from all 39 species Compare
Abrodictyum obscurum HCCA Cluster_183 0.005 OrthoFinder output from all 39 species Compare
Actinostachys digitata HCCA Cluster_189 0.005 OrthoFinder output from all 39 species Compare
Angiopteris evecta HCCA Cluster_56 0.016 OrthoFinder output from all 39 species Compare
Angiopteris evecta HCCA Cluster_62 0.005 OrthoFinder output from all 39 species Compare
Angiopteris evecta HCCA Cluster_73 0.007 OrthoFinder output from all 39 species Compare
Angiopteris evecta HCCA Cluster_146 0.004 OrthoFinder output from all 39 species Compare
Adiantum latifolium HCCA Cluster_20 0.05 OrthoFinder output from all 39 species Compare
Adiantum latifolium HCCA Cluster_24 0.054 OrthoFinder output from all 39 species Compare
Adiantum latifolium HCCA Cluster_26 0.005 OrthoFinder output from all 39 species Compare
Adiantum latifolium HCCA Cluster_85 0.033 OrthoFinder output from all 39 species Compare
Adiantum latifolium HCCA Cluster_130 0.006 OrthoFinder output from all 39 species Compare
Alsophila latebrosa HCCA Cluster_46 0.008 OrthoFinder output from all 39 species Compare
Alsophila latebrosa HCCA Cluster_170 0.004 OrthoFinder output from all 39 species Compare
Amblovenatum opulentum HCCA Cluster_105 0.003 OrthoFinder output from all 39 species Compare
Alsophila spinulosa HCCA Cluster_68 0.005 OrthoFinder output from all 39 species Compare
Cibotium barometz HCCA Cluster_37 0.004 OrthoFinder output from all 39 species Compare
Cibotium barometz HCCA Cluster_40 0.005 OrthoFinder output from all 39 species Compare
Cibotium barometz HCCA Cluster_46 0.003 OrthoFinder output from all 39 species Compare
Cibotium barometz HCCA Cluster_86 0.003 OrthoFinder output from all 39 species Compare
Cibotium barometz HCCA Cluster_100 0.003 OrthoFinder output from all 39 species Compare
Cibotium barometz HCCA Cluster_218 0.005 OrthoFinder output from all 39 species Compare
Dicranopteris curranii HCCA Cluster_74 0.088 OrthoFinder output from all 39 species Compare
Dicranopteris curranii HCCA Cluster_76 0.086 OrthoFinder output from all 39 species Compare
Dicranopteris curranii HCCA Cluster_77 0.01 OrthoFinder output from all 39 species Compare
Dicranopteris curranii HCCA Cluster_120 0.005 OrthoFinder output from all 39 species Compare
Dicranopteris curranii HCCA Cluster_148 0.006 OrthoFinder output from all 39 species Compare
Dicranopteris curranii HCCA Cluster_150 0.005 OrthoFinder output from all 39 species Compare
Dicranopteris curranii HCCA Cluster_194 0.033 OrthoFinder output from all 39 species Compare
Dicranopteris curranii HCCA Cluster_220 0.005 OrthoFinder output from all 39 species Compare
Davallia denticulata HCCA Cluster_48 0.005 OrthoFinder output from all 39 species Compare
Davallia denticulata HCCA Cluster_49 0.011 OrthoFinder output from all 39 species Compare
Davallia denticulata HCCA Cluster_50 0.004 OrthoFinder output from all 39 species Compare
Davallia denticulata HCCA Cluster_73 0.07 OrthoFinder output from all 39 species Compare
Davallia denticulata HCCA Cluster_78 0.007 OrthoFinder output from all 39 species Compare
Davallia denticulata HCCA Cluster_102 0.003 OrthoFinder output from all 39 species Compare
Davallia denticulata HCCA Cluster_118 0.089 OrthoFinder output from all 39 species Compare
Davallia denticulata HCCA Cluster_166 0.006 OrthoFinder output from all 39 species Compare
Lygodium flexuosum HCCA Cluster_161 0.006 OrthoFinder output from all 39 species Compare
Physcomitrella patens HCCA Cluster_10 0.005 OrthoFinder output from all 39 species Compare
Pyrrosia piloselloides HCCA Cluster_244 0.004 OrthoFinder output from all 39 species Compare
Salvinia molesta HCCA Cluster_17 0.005 OrthoFinder output from all 39 species Compare
Stenochlaena palustris HCCA Cluster_24 0.006 OrthoFinder output from all 39 species Compare
Tectaria incisa HCCA Cluster_52 0.015 OrthoFinder output from all 39 species Compare
Tectaria incisa HCCA Cluster_150 0.005 OrthoFinder output from all 39 species Compare
Sequences (133) (download table)

InterPro Domains

GO Terms

Family Terms