Coexpression cluster: Cluster_59 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044428 nuclear part 6.86% (7/102) 4.52 0.0 6e-06
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.94% (3/102) 6.68 3e-06 0.000117
GO:0000375 RNA splicing, via transesterification reactions 2.94% (3/102) 6.68 3e-06 0.000117
GO:0000398 mRNA splicing, via spliceosome 2.94% (3/102) 6.68 3e-06 0.000117
GO:0016070 RNA metabolic process 8.82% (9/102) 3.01 2e-06 0.000154
GO:0005681 spliceosomal complex 2.94% (3/102) 7.0 1e-06 0.000165
GO:0006397 mRNA processing 3.92% (4/102) 5.13 5e-06 0.000183
GO:0044424 intracellular part 14.71% (15/102) 1.96 7e-06 0.000209
GO:0008380 RNA splicing 2.94% (3/102) 6.0 1.3e-05 0.000295
GO:0016071 mRNA metabolic process 3.92% (4/102) 4.86 1.1e-05 0.000304
GO:0044464 cell part 14.71% (15/102) 1.88 1.3e-05 0.000316
GO:0006396 RNA processing 5.88% (6/102) 3.48 1.8e-05 0.000331
GO:0090304 nucleic acid metabolic process 8.82% (9/102) 2.62 1.7e-05 0.000342
GO:0044446 intracellular organelle part 6.86% (7/102) 2.77 8.2e-05 0.001333
GO:0044422 organelle part 6.86% (7/102) 2.77 8.2e-05 0.001333
GO:0006914 autophagy 1.96% (2/102) 6.83 0.000126 0.001716
GO:0061919 process utilizing autophagic mechanism 1.96% (2/102) 6.83 0.000126 0.001716
GO:0006139 nucleobase-containing compound metabolic process 8.82% (9/102) 2.25 0.000125 0.001908
GO:0006725 cellular aromatic compound metabolic process 8.82% (9/102) 2.11 0.000248 0.003036
GO:0046483 heterocycle metabolic process 8.82% (9/102) 2.12 0.000238 0.003066
GO:0006367 transcription initiation from RNA polymerase II promoter 1.96% (2/102) 6.25 0.000301 0.00335
GO:1901360 organic cyclic compound metabolic process 8.82% (9/102) 2.08 0.000297 0.003471
GO:0009966 regulation of signal transduction 1.96% (2/102) 5.72 0.000647 0.006339
GO:0010646 regulation of cell communication 1.96% (2/102) 5.72 0.000647 0.006339
GO:0023051 regulation of signaling 1.96% (2/102) 5.72 0.000647 0.006339
GO:0034641 cellular nitrogen compound metabolic process 9.8% (10/102) 1.74 0.000866 0.008163
GO:0048583 regulation of response to stimulus 1.96% (2/102) 5.42 0.000989 0.008978
GO:0005634 nucleus 4.9% (5/102) 2.51 0.00195 0.017059
GO:0006352 DNA-templated transcription, initiation 1.96% (2/102) 4.77 0.002431 0.020541
GO:0045944 positive regulation of transcription by RNA polymerase II 0.98% (1/102) 8.42 0.002924 0.021073
GO:0032784 regulation of DNA-templated transcription, elongation 0.98% (1/102) 8.42 0.002924 0.021073
GO:0032786 positive regulation of DNA-templated transcription, elongation 0.98% (1/102) 8.42 0.002924 0.021073
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 0.98% (1/102) 8.42 0.002924 0.021073
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 0.98% (1/102) 8.42 0.002924 0.021073
GO:1990904 ribonucleoprotein complex 4.9% (5/102) 2.35 0.00313 0.021912
GO:0032991 protein-containing complex 7.84% (8/102) 1.69 0.003407 0.023189
GO:0032774 RNA biosynthetic process 2.94% (3/102) 3.04 0.00596 0.03107
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 0.98% (1/102) 7.42 0.00584 0.031106
GO:1903508 positive regulation of nucleic acid-templated transcription 0.98% (1/102) 7.42 0.00584 0.031106
GO:0045893 positive regulation of transcription, DNA-templated 0.98% (1/102) 7.42 0.00584 0.031106
GO:0051254 positive regulation of RNA metabolic process 0.98% (1/102) 7.42 0.00584 0.031106
GO:1902680 positive regulation of RNA biosynthetic process 0.98% (1/102) 7.42 0.00584 0.031106
GO:0006376 mRNA splice site selection 0.98% (1/102) 7.42 0.00584 0.031106
GO:0000347 THO complex 0.98% (1/102) 7.42 0.00584 0.031106
GO:0000445 THO complex part of transcription export complex 0.98% (1/102) 7.42 0.00584 0.031106
GO:0005685 U1 snRNP 0.98% (1/102) 7.42 0.00584 0.031106
GO:0043227 membrane-bounded organelle 4.9% (5/102) 2.1 0.006367 0.031837
GO:0043231 intracellular membrane-bounded organelle 4.9% (5/102) 2.1 0.006367 0.031837
GO:0005575 cellular_component 15.69% (16/102) 1.0 0.00575 0.038073
GO:0097346 INO80-type complex 0.98% (1/102) 6.83 0.008748 0.039689
GO:0031011 Ino80 complex 0.98% (1/102) 6.83 0.008748 0.039689
GO:0033202 DNA helicase complex 0.98% (1/102) 6.83 0.008748 0.039689
GO:0070603 SWI/SNF superfamily-type complex 0.98% (1/102) 6.83 0.008748 0.039689
GO:0003723 RNA binding 3.92% (4/102) 2.34 0.008357 0.040947
GO:0006383 transcription by RNA polymerase III 0.98% (1/102) 6.42 0.011647 0.043235
GO:0035303 regulation of dephosphorylation 0.98% (1/102) 6.42 0.011647 0.043235
GO:0019212 phosphatase inhibitor activity 0.98% (1/102) 6.42 0.011647 0.043235
GO:0010921 regulation of phosphatase activity 0.98% (1/102) 6.42 0.011647 0.043235
GO:0051336 regulation of hydrolase activity 0.98% (1/102) 6.42 0.011647 0.043235
GO:0043666 regulation of phosphoprotein phosphatase activity 0.98% (1/102) 6.42 0.011647 0.043235
GO:0000428 DNA-directed RNA polymerase complex 0.98% (1/102) 6.42 0.011647 0.043235
GO:1904949 ATPase complex 0.98% (1/102) 6.42 0.011647 0.043235
GO:0055029 nuclear DNA-directed RNA polymerase complex 0.98% (1/102) 6.42 0.011647 0.043235
GO:0004864 protein phosphatase inhibitor activity 0.98% (1/102) 6.42 0.011647 0.043235
GO:0005666 RNA polymerase III complex 0.98% (1/102) 6.42 0.011647 0.043235
GO:0035304 regulation of protein dephosphorylation 0.98% (1/102) 6.42 0.011647 0.043235
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_6 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_14 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_66 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_82 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_92 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_96 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_98 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_107 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_117 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_163 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_174 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_213 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_215 0.033 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_224 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_227 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_240 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_260 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_272 0.014 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_81 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_95 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_120 0.038 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_124 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_26 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_65 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_73 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_134 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_189 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_297 0.025 Gene family Compare
Picea abies HCCA cluster Cluster_221 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_324 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_326 0.021 Gene family Compare
Picea abies HCCA cluster Cluster_343 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_386 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_481 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_140 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_172 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_181 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_198 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_101 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_121 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_162 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_217 0.021 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_270 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_56 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_70 0.021 Gene family Compare
Vitis vinifera HCCA cluster Cluster_123 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_154 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_167 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_171 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_194 0.02 Gene family Compare
Vitis vinifera HCCA cluster Cluster_224 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_228 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_230 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_236 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_15 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_18 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_110 0.024 Gene family Compare
Zea mays HCCA cluster Cluster_144 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_148 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_167 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_168 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_172 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_178 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_190 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_214 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_257 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_302 0.014 Gene family Compare
Sequences (102) (download table)

InterPro Domains

GO Terms

Family Terms