Coexpression cluster: Cluster_55 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901605 alpha-amino acid metabolic process 8.11% (6/74) 6.07 0.0 0.0
GO:0008652 cellular amino acid biosynthetic process 8.11% (6/74) 6.11 0.0 0.0
GO:0006520 cellular amino acid metabolic process 9.46% (7/74) 5.0 0.0 0.0
GO:1901607 alpha-amino acid biosynthetic process 6.76% (5/74) 6.2 0.0 0.0
GO:0046394 carboxylic acid biosynthetic process 8.11% (6/74) 4.66 0.0 5e-06
GO:0016053 organic acid biosynthetic process 8.11% (6/74) 4.66 0.0 5e-06
GO:0003824 catalytic activity 41.89% (31/74) 1.33 0.0 7e-06
GO:0006082 organic acid metabolic process 9.46% (7/74) 3.81 1e-06 1.3e-05
GO:0019752 carboxylic acid metabolic process 9.46% (7/74) 3.82 1e-06 1.4e-05
GO:0043436 oxoacid metabolic process 9.46% (7/74) 3.82 1e-06 1.4e-05
GO:0044283 small molecule biosynthetic process 8.11% (6/74) 4.32 1e-06 1.5e-05
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 2.7% (2/74) 8.88 4e-06 5.5e-05
GO:0006525 arginine metabolic process 2.7% (2/74) 8.88 4e-06 5.5e-05
GO:0006526 arginine biosynthetic process 2.7% (2/74) 8.88 4e-06 5.5e-05
GO:0036361 racemase activity, acting on amino acids and derivatives 2.7% (2/74) 8.88 4e-06 5.5e-05
GO:0016853 isomerase activity 6.76% (5/74) 4.46 3e-06 5.6e-05
GO:0044281 small molecule metabolic process 9.46% (7/74) 3.14 1.5e-05 0.000171
GO:0016854 racemase and epimerase activity 2.7% (2/74) 7.88 2.7e-05 0.000292
GO:0008152 metabolic process 31.08% (23/74) 1.2 7.6e-05 0.000796
GO:0009064 glutamine family amino acid metabolic process 2.7% (2/74) 7.07 9.3e-05 0.000873
GO:0009084 glutamine family amino acid biosynthetic process 2.7% (2/74) 7.07 9.3e-05 0.000873
GO:0009067 aspartate family amino acid biosynthetic process 2.7% (2/74) 6.88 0.000123 0.00111
GO:0009066 aspartate family amino acid metabolic process 2.7% (2/74) 6.56 0.000198 0.001701
GO:0016872 intramolecular lyase activity 2.7% (2/74) 6.42 0.000241 0.00199
GO:0008150 biological_process 39.19% (29/74) 0.89 0.000307 0.00243
GO:0003674 molecular_function 54.05% (40/74) 0.65 0.000429 0.003269
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 2.7% (2/74) 5.79 0.000592 0.004183
GO:1901566 organonitrogen compound biosynthetic process 8.11% (6/74) 2.55 0.000578 0.004238
GO:0009058 biosynthetic process 10.81% (8/74) 2.01 0.000841 0.005742
GO:0009072 aromatic amino acid family metabolic process 2.7% (2/74) 5.24 0.001291 0.008519
GO:0008837 diaminopimelate epimerase activity 1.35% (1/74) 8.88 0.002122 0.011055
GO:0004358 glutamate N-acetyltransferase activity 1.35% (1/74) 8.88 0.002122 0.011055
GO:0004055 argininosuccinate synthase activity 1.35% (1/74) 8.88 0.002122 0.011055
GO:0004635 phosphoribosyl-AMP cyclohydrolase activity 1.35% (1/74) 8.88 0.002122 0.011055
GO:0047661 amino-acid racemase activity 1.35% (1/74) 8.88 0.002122 0.011055
GO:0004834 tryptophan synthase activity 1.35% (1/74) 8.88 0.002122 0.011055
GO:0016879 ligase activity, forming carbon-nitrogen bonds 2.7% (2/74) 5.02 0.001737 0.011096
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 2.7% (2/74) 4.84 0.002247 0.011407
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 2.7% (2/74) 4.88 0.002114 0.013078
GO:0046916 cellular transition metal ion homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0098771 inorganic ion homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0055082 cellular chemical homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0055080 cation homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0055076 transition metal ion homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0055072 iron ion homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0055065 metal ion homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0050801 ion homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0048878 chemical homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0030003 cellular cation homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0006879 cellular iron ion homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0006875 cellular metal ion homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0006873 cellular ion homeostasis 1.35% (1/74) 7.88 0.004239 0.01526
GO:0019238 cyclohydrolase activity 1.35% (1/74) 7.88 0.004239 0.01526
GO:0005975 carbohydrate metabolic process 6.76% (5/74) 2.34 0.003152 0.015601
GO:0008199 ferric iron binding 1.35% (1/74) 7.3 0.006352 0.019055
GO:0006529 asparagine biosynthetic process 1.35% (1/74) 7.3 0.006352 0.019055
GO:0006528 asparagine metabolic process 1.35% (1/74) 7.3 0.006352 0.019055
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity 1.35% (1/74) 7.3 0.006352 0.019055
GO:0006553 lysine metabolic process 1.35% (1/74) 7.3 0.006352 0.019055
GO:0046451 diaminopimelate metabolic process 1.35% (1/74) 7.3 0.006352 0.019055
GO:0004645 phosphorylase activity 1.35% (1/74) 7.3 0.006352 0.019055
GO:0008184 glycogen phosphorylase activity 1.35% (1/74) 7.3 0.006352 0.019055
GO:0030259 lipid glycosylation 1.35% (1/74) 7.3 0.006352 0.019055
GO:0009089 lysine biosynthetic process via diaminopimelate 1.35% (1/74) 7.3 0.006352 0.019055
GO:0009085 lysine biosynthetic process 1.35% (1/74) 7.3 0.006352 0.019055
GO:0050662 coenzyme binding 5.41% (4/74) 2.62 0.004176 0.020168
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 2.7% (2/74) 3.97 0.007259 0.021136
GO:0044249 cellular biosynthetic process 8.11% (6/74) 1.81 0.007235 0.021382
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 1.35% (1/74) 6.88 0.00846 0.024276
GO:1901576 organic substance biosynthetic process 8.11% (6/74) 1.74 0.009122 0.025802
GO:0016746 transferase activity, transferring acyl groups 4.05% (3/74) 2.79 0.009425 0.026283
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 2.7% (2/74) 3.69 0.010588 0.027585
GO:0000105 histidine biosynthetic process 1.35% (1/74) 6.56 0.010564 0.027888
GO:0006547 histidine metabolic process 1.35% (1/74) 6.56 0.010564 0.027888
GO:0052803 imidazole-containing compound metabolic process 1.35% (1/74) 6.56 0.010564 0.027888
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor 1.35% (1/74) 6.56 0.010564 0.027888
GO:0043648 dicarboxylic acid metabolic process 1.35% (1/74) 6.3 0.012663 0.031342
GO:0006568 tryptophan metabolic process 1.35% (1/74) 6.3 0.012663 0.031342
GO:0006586 indolalkylamine metabolic process 1.35% (1/74) 6.3 0.012663 0.031342
GO:0042430 indole-containing compound metabolic process 1.35% (1/74) 6.3 0.012663 0.031342
GO:0016874 ligase activity 2.7% (2/74) 3.51 0.013525 0.033062
GO:0044238 primary metabolic process 17.57% (13/74) 0.94 0.015797 0.038143
GO:0030170 pyridoxal phosphate binding 2.7% (2/74) 3.31 0.017459 0.041154
GO:0070279 vitamin B6 binding 2.7% (2/74) 3.31 0.017459 0.041154
GO:0008080 N-acetyltransferase activity 1.35% (1/74) 5.71 0.018936 0.044109
GO:0019842 vitamin binding 2.7% (2/74) 3.17 0.021062 0.048492
GO:0071704 organic substance metabolic process 17.57% (13/74) 0.88 0.022203 0.049957
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_10 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_13 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_36 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_53 0.024 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_63 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_98 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_109 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_130 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_132 0.065 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_144 0.022 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_168 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_169 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_179 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_187 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_204 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_221 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_245 0.022 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_246 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_273 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_12 0.017 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_20 0.022 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_79 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_118 0.023 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_121 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_142 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_4 0.014 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_9 0.018 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_19 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_23 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_40 0.018 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_84 0.03 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_103 0.022 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_142 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_21 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_40 0.021 Gene family Compare
Oryza sativa HCCA cluster Cluster_111 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_142 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_162 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_185 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_187 0.022 Gene family Compare
Oryza sativa HCCA cluster Cluster_197 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_198 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_235 0.023 Gene family Compare
Oryza sativa HCCA cluster Cluster_236 0.033 Gene family Compare
Oryza sativa HCCA cluster Cluster_277 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_279 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_304 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_324 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_332 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_64 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_129 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_373 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_456 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_458 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_31 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_107 0.02 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_164 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_204 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_210 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_10 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_35 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_66 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_158 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_174 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_294 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_24 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_38 0.029 Gene family Compare
Vitis vinifera HCCA cluster Cluster_50 0.033 Gene family Compare
Vitis vinifera HCCA cluster Cluster_54 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_57 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_79 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_98 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_119 0.023 Gene family Compare
Vitis vinifera HCCA cluster Cluster_122 0.021 Gene family Compare
Vitis vinifera HCCA cluster Cluster_129 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_168 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_184 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_185 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_197 0.022 Gene family Compare
Vitis vinifera HCCA cluster Cluster_200 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_201 0.039 Gene family Compare
Vitis vinifera HCCA cluster Cluster_208 0.031 Gene family Compare
Vitis vinifera HCCA cluster Cluster_235 0.034 Gene family Compare
Vitis vinifera HCCA cluster Cluster_238 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_4 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_13 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_46 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_156 0.039 Gene family Compare
Zea mays HCCA cluster Cluster_162 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_207 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_209 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_264 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_269 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_289 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_354 0.015 Gene family Compare
Sequences (74) (download table)

InterPro Domains

GO Terms

Family Terms