Coexpression cluster: Cluster_469 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0051656 establishment of organelle localization 50.0% (2/4) 7.0 9e-05 0.003468
GO:0019750 chloroplast localization 50.0% (2/4) 7.03 8.7e-05 0.004174
GO:0051644 plastid localization 50.0% (2/4) 7.03 8.7e-05 0.004174
GO:0016072 rRNA metabolic process 50.0% (2/4) 5.85 0.000443 0.00531
GO:0044435 plastid part 75.0% (3/4) 4.04 0.000362 0.005352
GO:0009658 chloroplast organization 50.0% (2/4) 5.86 0.000435 0.005569
GO:0009534 chloroplast thylakoid 50.0% (2/4) 6.01 0.000354 0.005669
GO:0031976 plastid thylakoid 50.0% (2/4) 6.01 0.000354 0.005669
GO:0006364 rRNA processing 50.0% (2/4) 5.88 0.000428 0.005866
GO:0034470 ncRNA processing 50.0% (2/4) 5.67 0.000565 0.006384
GO:0061024 membrane organization 50.0% (2/4) 6.02 0.000351 0.006739
GO:0044434 chloroplast part 75.0% (3/4) 4.08 0.000334 0.007121
GO:0042651 thylakoid membrane 50.0% (2/4) 5.38 0.000845 0.007373
GO:0034357 photosynthetic membrane 50.0% (2/4) 5.38 0.000845 0.007373
GO:0010027 thylakoid membrane organization 50.0% (2/4) 6.11 0.000309 0.00742
GO:0009668 plastid membrane organization 50.0% (2/4) 6.11 0.000309 0.00742
GO:0009657 plastid organization 50.0% (2/4) 5.49 0.000726 0.007748
GO:0051640 organelle localization 50.0% (2/4) 6.27 0.000247 0.00791
GO:0034660 ncRNA metabolic process 50.0% (2/4) 5.3 0.00095 0.007932
GO:0055035 plastid thylakoid membrane 50.0% (2/4) 5.43 0.000789 0.007977
GO:0009579 thylakoid 50.0% (2/4) 5.39 0.00084 0.008061
GO:0051667 establishment of plastid localization 50.0% (2/4) 7.04 8.5e-05 0.008189
GO:0009902 chloroplast relocation 50.0% (2/4) 7.04 8.5e-05 0.008189
GO:0010190 cytochrome b6f complex assembly 25.0% (1/4) 9.74 0.001168 0.008307
GO:0009840 chloroplastic endopeptidase Clp complex 25.0% (1/4) 9.74 0.001168 0.008307
GO:0009368 endopeptidase Clp complex 25.0% (1/4) 9.74 0.001168 0.008307
GO:0044436 thylakoid part 50.0% (2/4) 5.17 0.001137 0.009099
GO:0034622 cellular protein-containing complex assembly 50.0% (2/4) 4.91 0.001624 0.010393
GO:0031984 organelle subcompartment 50.0% (2/4) 4.91 0.001624 0.010393
GO:0065003 protein-containing complex assembly 50.0% (2/4) 4.85 0.001761 0.010904
GO:0000175 3'-5'-exoribonuclease activity 25.0% (1/4) 9.28 0.001606 0.011013
GO:0045454 cell redox homeostasis 25.0% (1/4) 9.04 0.001898 0.011042
GO:0043933 protein-containing complex subunit organization 50.0% (2/4) 4.81 0.00185 0.011098
GO:0004532 exoribonuclease activity 25.0% (1/4) 8.93 0.002044 0.011211
GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters 25.0% (1/4) 8.93 0.002044 0.011211
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 25.0% (1/4) 8.83 0.00219 0.011678
GO:0017004 cytochrome complex assembly 25.0% (1/4) 8.74 0.002335 0.012119
GO:0008408 3'-5' exonuclease activity 25.0% (1/4) 8.28 0.00321 0.016219
GO:0016043 cellular component organization 75.0% (3/4) 2.88 0.003872 0.019062
GO:0022607 cellular component assembly 50.0% (2/4) 4.24 0.004043 0.019407
GO:0006396 RNA processing 50.0% (2/4) 4.14 0.004669 0.021863
GO:0071840 cellular component organization or biogenesis 75.0% (3/4) 2.78 0.004801 0.021947
GO:0046483 heterocycle metabolic process 75.0% (3/4) 2.76 0.004938 0.022047
GO:0044422 organelle part 75.0% (3/4) 2.72 0.005362 0.022879
GO:0044446 intracellular organelle part 75.0% (3/4) 2.73 0.005327 0.023246
GO:0034641 cellular nitrogen compound metabolic process 75.0% (3/4) 2.68 0.005847 0.024404
GO:0004527 exonuclease activity 25.0% (1/4) 7.38 0.005976 0.024414
GO:0006725 cellular aromatic compound metabolic process 75.0% (3/4) 2.63 0.006522 0.026089
GO:0033015 tetrapyrrole catabolic process 25.0% (1/4) 6.96 0.008011 0.028483
GO:0006787 porphyrin-containing compound catabolic process 25.0% (1/4) 6.96 0.008011 0.028483
GO:0046149 pigment catabolic process 25.0% (1/4) 6.96 0.008011 0.028483
GO:0015996 chlorophyll catabolic process 25.0% (1/4) 6.96 0.008011 0.028483
GO:0009773 photosynthetic electron transport in photosystem I 25.0% (1/4) 7.1 0.007284 0.028543
GO:1901360 organic cyclic compound metabolic process 75.0% (3/4) 2.56 0.007479 0.02872
GO:0051649 establishment of localization in cell 50.0% (2/4) 3.61 0.009508 0.032028
GO:0010287 plastoglobule 25.0% (1/4) 6.65 0.009897 0.032208
GO:0009507 chloroplast 75.0% (3/4) 2.45 0.009277 0.032387
GO:0009767 photosynthetic electron transport chain 25.0% (1/4) 6.72 0.009462 0.032441
GO:0009536 plastid 75.0% (3/4) 2.42 0.009814 0.032488
GO:0004540 ribonuclease activity 25.0% (1/4) 6.55 0.010622 0.033433
GO:0042793 plastid transcription 25.0% (1/4) 6.57 0.010477 0.033527
GO:0051641 cellular localization 50.0% (2/4) 3.48 0.011332 0.035094
GO:0006996 organelle organization 50.0% (2/4) 3.42 0.012337 0.0376
GO:0022900 electron transport chain 25.0% (1/4) 6.23 0.013228 0.039684
GO:0016070 RNA metabolic process 50.0% (2/4) 3.3 0.014346 0.042377
GO:0009987 cellular process 100.0% (4/4) 1.5 0.015567 0.045286
GO:0006399 tRNA metabolic process 25.0% (1/4) 5.97 0.015829 0.04536
GO:0044444 cytoplasmic part 100.0% (4/4) 1.48 0.016535 0.046688
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (4) (download table)

InterPro Domains

GO Terms

Family Terms