Coexpression cluster: Cluster_2 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006091 generation of precursor metabolites and energy 10.76% (17/158) 5.52 0.0 0.0
GO:0009767 photosynthetic electron transport chain 8.23% (13/158) 6.68 0.0 0.0
GO:0019684 photosynthesis, light reaction 8.23% (13/158) 6.68 0.0 0.0
GO:0009536 plastid 9.49% (15/158) 5.67 0.0 0.0
GO:0009507 chloroplast 9.49% (15/158) 5.67 0.0 0.0
GO:0022900 electron transport chain 8.23% (13/158) 6.16 0.0 0.0
GO:0044424 intracellular part 20.89% (33/158) 2.47 0.0 0.0
GO:0009055 electron transfer activity 9.49% (15/158) 4.35 0.0 0.0
GO:0044464 cell part 20.89% (33/158) 2.39 0.0 0.0
GO:0005575 cellular_component 28.48% (45/158) 1.86 0.0 0.0
GO:0016168 chlorophyll binding 4.43% (7/158) 7.01 0.0 0.0
GO:0009521 photosystem 6.96% (11/158) 4.92 0.0 0.0
GO:0044436 thylakoid part 6.96% (11/158) 4.77 0.0 0.0
GO:0044444 cytoplasmic part 12.66% (20/158) 2.92 0.0 0.0
GO:0098796 membrane protein complex 8.23% (13/158) 3.84 0.0 0.0
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 3.8% (6/158) 6.46 0.0 0.0
GO:0009772 photosynthetic electron transport in photosystem II 3.8% (6/158) 6.46 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 10.13% (16/158) 3.15 0.0 0.0
GO:0043227 membrane-bounded organelle 10.13% (16/158) 3.15 0.0 0.0
GO:0015002 heme-copper terminal oxidase activity 3.8% (6/158) 6.28 0.0 0.0
GO:0043229 intracellular organelle 12.66% (20/158) 2.61 0.0 0.0
GO:0043226 organelle 12.66% (20/158) 2.61 0.0 0.0
GO:0004129 cytochrome-c oxidase activity 3.16% (5/158) 6.3 0.0 0.0
GO:0016675 oxidoreductase activity, acting on a heme group of donors 3.16% (5/158) 6.3 0.0 0.0
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor 3.16% (5/158) 6.3 0.0 0.0
GO:0045333 cellular respiration 2.53% (4/158) 7.2 0.0 0.0
GO:0015980 energy derivation by oxidation of organic compounds 2.53% (4/158) 7.2 0.0 0.0
GO:0009060 aerobic respiration 2.53% (4/158) 7.2 0.0 0.0
GO:0055114 oxidation-reduction process 14.56% (23/158) 2.03 0.0 0.0
GO:0044425 membrane part 12.03% (19/158) 2.22 0.0 0.0
GO:0015078 proton transmembrane transporter activity 4.43% (7/158) 4.13 0.0 1e-06
GO:0046906 tetrapyrrole binding 8.23% (13/158) 2.64 0.0 1e-06
GO:0032991 protein-containing complex 10.76% (17/158) 2.15 0.0 2e-06
GO:0016491 oxidoreductase activity 13.29% (21/158) 1.8 1e-06 5e-06
GO:0015077 monovalent inorganic cation transmembrane transporter activity 4.43% (7/158) 3.79 1e-06 5e-06
GO:0016651 oxidoreductase activity, acting on NAD(P)H 3.16% (5/158) 4.75 1e-06 7e-06
GO:0048037 cofactor binding 9.49% (15/158) 2.0 6e-06 3.6e-05
GO:0016020 membrane 8.86% (14/158) 2.02 1.1e-05 6.2e-05
GO:0022890 inorganic cation transmembrane transporter activity 4.43% (7/158) 3.22 1.1e-05 6.4e-05
GO:0044237 cellular metabolic process 18.35% (29/158) 1.21 1.8e-05 9.7e-05
GO:0008324 cation transmembrane transporter activity 4.43% (7/158) 3.04 2.5e-05 0.000126
GO:0003954 NADH dehydrogenase activity 1.9% (3/158) 5.67 2.5e-05 0.000128
GO:0008137 NADH dehydrogenase (ubiquinone) activity 1.9% (3/158) 5.67 2.5e-05 0.000128
GO:0050136 NADH dehydrogenase (quinone) activity 1.9% (3/158) 5.67 2.5e-05 0.000128
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 1.9% (3/158) 5.28 5.9e-05 0.000288
GO:0043168 anion binding 13.92% (22/158) 1.33 6.4e-05 0.000305
GO:0015318 inorganic molecular entity transmembrane transporter activity 4.43% (7/158) 2.72 0.000101 0.000471
GO:0009987 cellular process 19.62% (31/158) 0.99 0.000163 0.000744
GO:0015075 ion transmembrane transporter activity 4.43% (7/158) 2.58 0.000184 0.000824
GO:0009539 photosystem II reaction center 1.27% (2/158) 6.46 0.000202 0.000885
GO:0015979 photosynthesis 2.53% (4/158) 3.66 0.000295 0.001265
GO:0005524 ATP binding 9.49% (15/158) 1.4 0.000611 0.002574
GO:0010109 regulation of photosynthesis 1.27% (2/158) 5.62 0.000719 0.002811
GO:0043467 regulation of generation of precursor metabolites and energy 1.27% (2/158) 5.62 0.000719 0.002811
GO:0042548 regulation of photosynthesis, light reaction 1.27% (2/158) 5.62 0.000719 0.002811
GO:0042549 photosystem II stabilization 1.27% (2/158) 5.62 0.000719 0.002811
GO:0097159 organic cyclic compound binding 20.25% (32/158) 0.82 0.000929 0.003507
GO:1901363 heterocyclic compound binding 20.25% (32/158) 0.82 0.000929 0.003507
GO:0008152 metabolic process 22.78% (36/158) 0.75 0.001055 0.003915
GO:0017004 cytochrome complex assembly 1.27% (2/158) 5.33 0.001092 0.003985
GO:0008144 drug binding 9.49% (15/158) 1.27 0.001457 0.005231
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 1.27% (2/158) 4.88 0.00206 0.007275
GO:0035639 purine ribonucleoside triphosphate binding 9.49% (15/158) 1.18 0.002701 0.00939
GO:0032559 adenyl ribonucleotide binding 9.49% (15/158) 1.17 0.002898 0.009918
GO:0030554 adenyl nucleotide binding 9.49% (15/158) 1.17 0.002973 0.010017
GO:1901265 nucleoside phosphate binding 10.76% (17/158) 1.02 0.004573 0.014949
GO:0000166 nucleotide binding 10.76% (17/158) 1.02 0.004573 0.014949
GO:0009579 thylakoid 1.27% (2/158) 4.2 0.005271 0.016977
GO:0048038 quinone binding 1.27% (2/158) 4.14 0.005713 0.018132
GO:0015985 energy coupled proton transport, down electrochemical gradient 1.27% (2/158) 3.98 0.007134 0.021701
GO:0015986 ATP synthesis coupled proton transport 1.27% (2/158) 3.98 0.007134 0.021701
GO:0009523 photosystem II 1.27% (2/158) 3.98 0.007134 0.021701
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 1.27% (2/158) 3.88 0.008162 0.024155
GO:0036094 small molecule binding 10.76% (17/158) 0.93 0.00813 0.024391
GO:0016984 ribulose-bisphosphate carboxylase activity 0.63% (1/158) 6.79 0.00904 0.026395
GO:0032555 purine ribonucleotide binding 9.49% (15/158) 0.98 0.009353 0.026951
GO:0017076 purine nucleotide binding 9.49% (15/158) 0.97 0.009841 0.02799
GO:0032553 ribonucleotide binding 9.49% (15/158) 0.97 0.009992 0.028054
GO:0097367 carbohydrate derivative binding 9.49% (15/158) 0.96 0.010825 0.030008
GO:0043167 ion binding 14.56% (23/158) 0.72 0.012303 0.03368
GO:0009522 photosystem I 1.27% (2/158) 3.46 0.014209 0.038418
GO:0016021 integral component of membrane 5.06% (8/158) 1.33 0.015252 0.040733
GO:0044271 cellular nitrogen compound biosynthetic process 4.43% (7/158) 1.42 0.016327 0.043079
GO:0020037 heme binding 3.8% (6/158) 1.56 0.016848 0.043926
GO:0031224 intrinsic component of membrane 5.06% (8/158) 1.29 0.01747 0.045012
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_79 0.036 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_80 0.1 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_165 0.053 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_19 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_21 0.033 Gene family Compare
Oryza sativa HCCA cluster Cluster_83 0.034 Gene family Compare
Oryza sativa HCCA cluster Cluster_89 0.025 Gene family Compare
Oryza sativa HCCA cluster Cluster_91 0.022 Gene family Compare
Oryza sativa HCCA cluster Cluster_139 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_143 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_243 0.055 Gene family Compare
Oryza sativa HCCA cluster Cluster_326 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_334 0.033 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_28 0.077 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_3 0.034 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_4 0.055 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_29 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_110 0.051 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_120 0.034 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_132 0.034 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_157 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_191 0.024 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_192 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_220 0.049 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_228 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_284 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_12 0.077 Gene family Compare
Vitis vinifera HCCA cluster Cluster_64 0.026 Gene family Compare
Zea mays HCCA cluster Cluster_3 0.017 Gene family Compare
Sequences (158) (download table)

InterPro Domains

GO Terms

Family Terms