Coexpression cluster: Cluster_30 (HCCA cluster)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009536 plastid 91.27% (115/126) 2.7 0.0 0.0
GO:0006081 cellular aldehyde metabolic process 37.3% (47/126) 4.58 0.0 0.0
GO:0055035 plastid thylakoid membrane 44.44% (56/126) 5.26 0.0 0.0
GO:0009579 thylakoid 42.06% (53/126) 5.14 0.0 0.0
GO:0006364 rRNA processing 30.95% (39/126) 5.18 0.0 0.0
GO:0034357 photosynthetic membrane 44.44% (56/126) 5.21 0.0 0.0
GO:0044435 plastid part 75.4% (95/126) 4.05 0.0 0.0
GO:0042651 thylakoid membrane 44.44% (56/126) 5.21 0.0 0.0
GO:0009507 chloroplast 91.27% (115/126) 2.73 0.0 0.0
GO:0019682 glyceraldehyde-3-phosphate metabolic process 37.3% (47/126) 4.96 0.0 0.0
GO:0010207 photosystem II assembly 28.57% (36/126) 5.47 0.0 0.0
GO:0044434 chloroplast part 75.4% (95/126) 4.09 0.0 0.0
GO:0044436 thylakoid part 51.59% (65/126) 5.21 0.0 0.0
GO:0034470 ncRNA processing 30.95% (39/126) 4.98 0.0 0.0
GO:0044422 organelle part 76.19% (96/126) 2.75 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 44.44% (56/126) 5.27 0.0 0.0
GO:0044446 intracellular organelle part 76.19% (96/126) 2.75 0.0 0.0
GO:0016072 rRNA metabolic process 30.95% (39/126) 5.16 0.0 0.0
GO:0044444 cytoplasmic part 95.24% (120/126) 1.41 0.0 0.0
GO:0009534 chloroplast thylakoid 27.78% (35/126) 5.17 0.0 0.0
GO:0031976 plastid thylakoid 27.78% (35/126) 5.17 0.0 0.0
GO:0034660 ncRNA metabolic process 30.95% (39/126) 4.61 0.0 0.0
GO:0009941 chloroplast envelope 34.13% (43/126) 4.12 0.0 0.0
GO:0009526 plastid envelope 34.13% (43/126) 4.11 0.0 0.0
GO:0044237 cellular metabolic process 81.75% (103/126) 1.66 0.0 0.0
GO:0031975 envelope 34.13% (43/126) 3.96 0.0 0.0
GO:0031967 organelle envelope 34.13% (43/126) 3.96 0.0 0.0
GO:0009657 plastid organization 27.78% (35/126) 4.65 0.0 0.0
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 25.4% (32/126) 4.93 0.0 0.0
GO:0046490 isopentenyl diphosphate metabolic process 25.4% (32/126) 4.91 0.0 0.0
GO:0009240 isopentenyl diphosphate biosynthetic process 25.4% (32/126) 4.91 0.0 0.0
GO:0034622 cellular protein-containing complex assembly 30.16% (38/126) 4.18 0.0 0.0
GO:0009570 chloroplast stroma 32.54% (41/126) 3.92 0.0 0.0
GO:0009532 plastid stroma 32.54% (41/126) 3.92 0.0 0.0
GO:1901135 carbohydrate derivative metabolic process 39.68% (50/126) 3.3 0.0 0.0
GO:0065003 protein-containing complex assembly 30.16% (38/126) 4.12 0.0 0.0
GO:0006739 NADP metabolic process 23.02% (29/126) 5.08 0.0 0.0
GO:0043933 protein-containing complex subunit organization 30.16% (38/126) 4.08 0.0 0.0
GO:0006098 pentose-phosphate shunt 22.22% (28/126) 5.11 0.0 0.0
GO:0051156 glucose 6-phosphate metabolic process 22.22% (28/126) 5.06 0.0 0.0
GO:0009987 cellular process 88.1% (111/126) 1.32 0.0 0.0
GO:0022607 cellular component assembly 33.33% (42/126) 3.66 0.0 0.0
GO:0008152 metabolic process 81.75% (103/126) 1.49 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 56.35% (71/126) 2.27 0.0 0.0
GO:0032991 protein-containing complex 42.06% (53/126) 2.95 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 28.57% (36/126) 4.03 0.0 0.0
GO:0019637 organophosphate metabolic process 38.1% (48/126) 3.19 0.0 0.0
GO:0044249 cellular biosynthetic process 58.73% (74/126) 2.15 0.0 0.0
GO:0031984 organelle subcompartment 27.78% (35/126) 4.06 0.0 0.0
GO:0044281 small molecule metabolic process 50.79% (64/126) 2.36 0.0 0.0
GO:0008654 phospholipid biosynthetic process 25.4% (32/126) 4.17 0.0 0.0
GO:0015979 photosynthesis 20.63% (26/126) 4.9 0.0 0.0
GO:0019684 photosynthesis, light reaction 19.05% (24/126) 5.14 0.0 0.0
GO:1901576 organic substance biosynthetic process 58.73% (74/126) 2.02 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 40.48% (51/126) 2.83 0.0 0.0
GO:0006644 phospholipid metabolic process 25.4% (32/126) 4.09 0.0 0.0
GO:0043436 oxoacid metabolic process 43.65% (55/126) 2.63 0.0 0.0
GO:0006082 organic acid metabolic process 43.65% (55/126) 2.63 0.0 0.0
GO:0006090 pyruvate metabolic process 25.4% (32/126) 4.07 0.0 0.0
GO:0006396 RNA processing 30.95% (39/126) 3.44 0.0 0.0
GO:0009058 biosynthetic process 58.73% (74/126) 1.98 0.0 0.0
GO:0044238 primary metabolic process 70.63% (89/126) 1.58 0.0 0.0
GO:0006807 nitrogen compound metabolic process 64.29% (81/126) 1.72 0.0 0.0
GO:0046496 nicotinamide nucleotide metabolic process 23.02% (29/126) 4.09 0.0 0.0
GO:0006796 phosphate-containing compound metabolic process 40.48% (51/126) 2.61 0.0 0.0
GO:0019752 carboxylic acid metabolic process 40.48% (51/126) 2.6 0.0 0.0
GO:0019362 pyridine nucleotide metabolic process 23.02% (29/126) 4.07 0.0 0.0
GO:0006793 phosphorus metabolic process 40.48% (51/126) 2.59 0.0 0.0
GO:0072524 pyridine-containing compound metabolic process 23.02% (29/126) 4.04 0.0 0.0
GO:0009521 photosystem 11.11% (14/126) 6.71 0.0 0.0
GO:0006733 oxidoreduction coenzyme metabolic process 23.02% (29/126) 3.89 0.0 0.0
GO:0016070 RNA metabolic process 34.92% (44/126) 2.79 0.0 0.0
GO:0071704 organic substance metabolic process 71.43% (90/126) 1.41 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 45.24% (57/126) 2.24 0.0 0.0
GO:0046483 heterocycle metabolic process 47.62% (60/126) 2.11 0.0 0.0
GO:0051186 cofactor metabolic process 29.37% (37/126) 3.12 0.0 0.0
GO:0098796 membrane protein complex 21.43% (27/126) 3.97 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 49.21% (62/126) 2.02 0.0 0.0
GO:0043170 macromolecule metabolic process 57.14% (72/126) 1.73 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 53.97% (68/126) 1.83 0.0 0.0
GO:0009767 photosynthetic electron transport chain 12.7% (16/126) 5.74 0.0 0.0
GO:0071840 cellular component organization or biogenesis 46.03% (58/126) 2.07 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 49.21% (62/126) 1.95 0.0 0.0
GO:0016043 cellular component organization 44.44% (56/126) 2.13 0.0 0.0
GO:0031978 plastid thylakoid lumen 12.7% (16/126) 5.61 0.0 0.0
GO:0009543 chloroplast thylakoid lumen 12.7% (16/126) 5.61 0.0 0.0
GO:0098807 chloroplast thylakoid membrane protein complex 10.32% (13/126) 6.51 0.0 0.0
GO:0006732 coenzyme metabolic process 23.02% (29/126) 3.44 0.0 0.0
GO:0009773 photosynthetic electron transport in photosystem I 11.11% (14/126) 5.93 0.0 0.0
GO:0008610 lipid biosynthetic process 27.78% (35/126) 2.95 0.0 0.0
GO:0031977 thylakoid lumen 12.7% (16/126) 5.3 0.0 0.0
GO:0009668 plastid membrane organization 15.87% (20/126) 4.46 0.0 0.0
GO:0010027 thylakoid membrane organization 15.87% (20/126) 4.46 0.0 0.0
GO:0022900 electron transport chain 12.7% (16/126) 5.26 0.0 0.0
GO:0016020 membrane 53.97% (68/126) 1.65 0.0 0.0
GO:0061024 membrane organization 15.87% (20/126) 4.36 0.0 0.0
GO:0019693 ribose phosphate metabolic process 22.22% (28/126) 3.32 0.0 0.0
GO:0090304 nucleic acid metabolic process 35.71% (45/126) 2.29 0.0 0.0
GO:0035304 regulation of protein dephosphorylation 13.49% (17/126) 4.72 0.0 0.0
GO:0090407 organophosphate biosynthetic process 25.4% (32/126) 2.93 0.0 0.0
GO:0035303 regulation of dephosphorylation 13.49% (17/126) 4.71 0.0 0.0
GO:0032787 monocarboxylic acid metabolic process 29.37% (37/126) 2.62 0.0 0.0
GO:0044255 cellular lipid metabolic process 27.78% (35/126) 2.71 0.0 0.0
GO:0030095 chloroplast photosystem II 7.94% (10/126) 6.84 0.0 0.0
GO:0009117 nucleotide metabolic process 23.02% (29/126) 3.07 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 95.24% (120/126) 0.63 0.0 0.0
GO:0006753 nucleoside phosphate metabolic process 23.02% (29/126) 3.07 0.0 0.0
GO:0043227 membrane-bounded organelle 95.24% (120/126) 0.63 0.0 0.0
GO:0006790 sulfur compound metabolic process 22.22% (28/126) 3.11 0.0 0.0
GO:0043229 intracellular organelle 95.24% (120/126) 0.61 0.0 0.0
GO:0043226 organelle 95.24% (120/126) 0.61 0.0 0.0
GO:0009523 photosystem II 7.94% (10/126) 6.56 0.0 0.0
GO:0006629 lipid metabolic process 28.57% (36/126) 2.52 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 27.78% (35/126) 2.58 0.0 0.0
GO:0006996 organelle organization 27.78% (35/126) 2.57 0.0 0.0
GO:0010287 plastoglobule 10.32% (13/126) 5.38 0.0 0.0
GO:0055086 nucleobase-containing small molecule metabolic process 23.02% (29/126) 2.92 0.0 0.0
GO:0009059 macromolecule biosynthetic process 28.57% (36/126) 2.43 0.0 0.0
GO:0044272 sulfur compound biosynthetic process 18.25% (23/126) 3.4 0.0 0.0
GO:0019220 regulation of phosphate metabolic process 13.49% (17/126) 4.23 0.0 0.0
GO:0051174 regulation of phosphorus metabolic process 13.49% (17/126) 4.23 0.0 0.0
GO:0031399 regulation of protein modification process 13.49% (17/126) 4.19 0.0 0.0
GO:0019344 cysteine biosynthetic process 13.49% (17/126) 4.17 0.0 0.0
GO:0006534 cysteine metabolic process 13.49% (17/126) 4.16 0.0 0.0
GO:0009070 serine family amino acid biosynthetic process 13.49% (17/126) 4.15 0.0 0.0
GO:0009069 serine family amino acid metabolic process 14.29% (18/126) 3.94 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 26.98% (34/126) 2.39 0.0 0.0
GO:0003735 structural constituent of ribosome 15.08% (19/126) 3.52 0.0 0.0
GO:0006412 translation 15.08% (19/126) 3.5 0.0 0.0
GO:0044425 membrane part 21.43% (27/126) 2.7 0.0 0.0
GO:0043043 peptide biosynthetic process 15.08% (19/126) 3.48 0.0 0.0
GO:0032268 regulation of cellular protein metabolic process 13.49% (17/126) 3.76 0.0 0.0
GO:0009538 photosystem I reaction center 5.56% (7/126) 7.11 0.0 0.0
GO:0051246 regulation of protein metabolic process 13.49% (17/126) 3.73 0.0 0.0
GO:0006518 peptide metabolic process 15.08% (19/126) 3.43 0.0 0.0
GO:0000096 sulfur amino acid metabolic process 14.29% (18/126) 3.56 0.0 0.0
GO:0008652 cellular amino acid biosynthetic process 15.87% (20/126) 3.27 0.0 0.0
GO:0030003 cellular cation homeostasis 11.11% (14/126) 4.2 0.0 0.0
GO:0000097 sulfur amino acid biosynthetic process 13.49% (17/126) 3.64 0.0 0.0
GO:0043604 amide biosynthetic process 15.08% (19/126) 3.34 0.0 0.0
GO:0006873 cellular ion homeostasis 11.11% (14/126) 4.12 0.0 0.0
GO:0055082 cellular chemical homeostasis 11.11% (14/126) 4.09 0.0 0.0
GO:0015995 chlorophyll biosynthetic process 9.52% (12/126) 4.57 0.0 0.0
GO:0044424 intracellular part 96.83% (122/126) 0.43 0.0 0.0
GO:0005198 structural molecule activity 15.08% (19/126) 3.19 0.0 0.0
GO:0019725 cellular homeostasis 11.11% (14/126) 3.96 0.0 0.0
GO:0046148 pigment biosynthetic process 11.9% (15/126) 3.76 0.0 0.0
GO:1901605 alpha-amino acid metabolic process 15.87% (20/126) 3.04 0.0 0.0
GO:0006520 cellular amino acid metabolic process 17.46% (22/126) 2.84 0.0 0.0
GO:0070838 divalent metal ion transport 11.11% (14/126) 3.86 0.0 0.0
GO:0055080 cation homeostasis 11.11% (14/126) 3.86 0.0 0.0
GO:0072511 divalent inorganic cation transport 11.11% (14/126) 3.84 0.0 0.0
GO:0006779 porphyrin-containing compound biosynthetic process 9.52% (12/126) 4.27 0.0 0.0
GO:1990904 ribonucleoprotein complex 15.08% (19/126) 3.05 0.0 0.0
GO:1901607 alpha-amino acid biosynthetic process 13.49% (17/126) 3.29 0.0 0.0
GO:0033014 tetrapyrrole biosynthetic process 9.52% (12/126) 4.23 0.0 0.0
GO:0043603 cellular amide metabolic process 15.08% (19/126) 3.0 0.0 0.0
GO:0019252 starch biosynthetic process 10.32% (13/126) 3.92 0.0 0.0
GO:0050801 ion homeostasis 11.11% (14/126) 3.7 0.0 0.0
GO:0042440 pigment metabolic process 11.9% (15/126) 3.43 0.0 0.0
GO:0009654 photosystem II oxygen evolving complex 4.76% (6/126) 6.65 0.0 0.0
GO:0015994 chlorophyll metabolic process 9.52% (12/126) 3.93 0.0 0.0
GO:0065007 biological regulation 46.03% (58/126) 1.22 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 36.51% (46/126) 1.46 0.0 0.0
GO:0048878 chemical homeostasis 11.11% (14/126) 3.48 0.0 0.0
GO:0055114 oxidation-reduction process 12.7% (16/126) 3.16 0.0 0.0
GO:0005840 ribosome 11.9% (15/126) 3.3 0.0 0.0
GO:0005982 starch metabolic process 10.32% (13/126) 3.64 0.0 0.0
GO:0090626 plant epidermis morphogenesis 8.73% (11/126) 4.09 0.0 0.0
GO:0010103 stomatal complex morphogenesis 8.73% (11/126) 4.09 0.0 0.0
GO:0046394 carboxylic acid biosynthetic process 19.84% (25/126) 2.22 0.0 0.0
GO:0016053 organic acid biosynthetic process 19.84% (25/126) 2.22 0.0 0.0
GO:0016168 chlorophyll binding 5.56% (7/126) 5.57 0.0 0.0
GO:0000023 maltose metabolic process 8.73% (11/126) 3.98 0.0 0.0
GO:0006778 porphyrin-containing compound metabolic process 9.52% (12/126) 3.7 0.0 0.0
GO:0044267 cellular protein metabolic process 26.19% (33/126) 1.8 0.0 0.0
GO:0033013 tetrapyrrole metabolic process 9.52% (12/126) 3.69 0.0 0.0
GO:0044464 cell part 97.62% (123/126) 0.31 0.0 0.0
GO:0009250 glucan biosynthetic process 10.32% (13/126) 3.32 0.0 0.0
GO:0010218 response to far red light 7.14% (9/126) 4.3 0.0 0.0
GO:0031328 positive regulation of cellular biosynthetic process 12.7% (16/126) 2.84 0.0 0.0
GO:0042592 homeostatic process 11.11% (14/126) 3.11 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 20.63% (26/126) 2.0 0.0 0.0
GO:0010114 response to red light 7.14% (9/126) 4.23 0.0 0.0
GO:0030076 light-harvesting complex 4.76% (6/126) 5.7 0.0 0.0
GO:0005984 disaccharide metabolic process 8.73% (11/126) 3.63 0.0 0.0
GO:0031325 positive regulation of cellular metabolic process 12.7% (16/126) 2.77 0.0 0.0
GO:0046906 tetrapyrrole binding 5.56% (7/126) 5.02 0.0 0.0
GO:0051254 positive regulation of RNA metabolic process 11.9% (15/126) 2.85 0.0 0.0
GO:1903508 positive regulation of nucleic acid-templated transcription 11.9% (15/126) 2.85 0.0 0.0
GO:1902680 positive regulation of RNA biosynthetic process 11.9% (15/126) 2.85 0.0 0.0
GO:0045893 positive regulation of transcription, DNA-templated 11.9% (15/126) 2.85 0.0 0.0
GO:0044283 small molecule biosynthetic process 19.84% (25/126) 1.99 0.0 0.0
GO:0009311 oligosaccharide metabolic process 8.73% (11/126) 3.51 0.0 0.0
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 11.9% (15/126) 2.81 0.0 0.0
GO:0010628 positive regulation of gene expression 11.9% (15/126) 2.78 0.0 0.0
GO:0010557 positive regulation of macromolecule biosynthetic process 11.9% (15/126) 2.77 0.0 0.0
GO:0009522 photosystem I 3.17% (4/126) 7.18 0.0 0.0
GO:0009637 response to blue light 7.14% (9/126) 3.93 0.0 0.0
GO:0051173 positive regulation of nitrogen compound metabolic process 11.9% (15/126) 2.72 0.0 0.0
GO:0010604 positive regulation of macromolecule metabolic process 11.9% (15/126) 2.7 0.0 0.0
GO:0009891 positive regulation of biosynthetic process 12.7% (16/126) 2.57 0.0 0.0
GO:0018130 heterocycle biosynthetic process 17.46% (22/126) 2.04 0.0 0.0
GO:0006073 cellular glucan metabolic process 10.32% (13/126) 2.92 0.0 0.0
GO:0044042 glucan metabolic process 10.32% (13/126) 2.92 0.0 0.0
GO:0048037 cofactor binding 6.35% (8/126) 4.06 0.0 0.0
GO:0009902 chloroplast relocation 6.35% (8/126) 4.06 0.0 0.0
GO:0051667 establishment of plastid localization 6.35% (8/126) 4.06 0.0 0.0
GO:1901362 organic cyclic compound biosynthetic process 20.63% (26/126) 1.77 0.0 0.0
GO:0009893 positive regulation of metabolic process 12.7% (16/126) 2.48 0.0 0.0
GO:0051644 plastid localization 6.35% (8/126) 4.05 0.0 0.0
GO:0019750 chloroplast localization 6.35% (8/126) 4.05 0.0 0.0
GO:0009735 response to cytokinin 7.94% (10/126) 3.44 0.0 0.0
GO:0051656 establishment of organelle localization 6.35% (8/126) 4.02 0.0 0.0
GO:0031323 regulation of cellular metabolic process 25.4% (32/126) 1.51 0.0 0.0
GO:0043085 positive regulation of catalytic activity 6.35% (8/126) 3.91 0.0 0.0
GO:0010155 regulation of proton transport 5.56% (7/126) 4.3 0.0 0.0
GO:0044093 positive regulation of molecular function 6.35% (8/126) 3.88 0.0 0.0
GO:1904062 regulation of cation transmembrane transport 5.56% (7/126) 4.27 0.0 0.0
GO:0032544 plastid translation 3.17% (4/126) 6.44 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 12.7% (16/126) 2.34 0.0 0.0
GO:0043228 non-membrane-bounded organelle 12.7% (16/126) 2.34 0.0 0.0
GO:0090698 post-embryonic plant morphogenesis 8.73% (11/126) 2.99 0.0 1e-06
GO:0030001 metal ion transport 11.11% (14/126) 2.52 0.0 1e-06
GO:0008150 biological_process 93.65% (118/126) 0.3 0.0 1e-06
GO:0019538 protein metabolic process 26.19% (33/126) 1.37 0.0 1e-06
GO:0033692 cellular polysaccharide biosynthetic process 10.32% (13/126) 2.58 0.0 1e-06
GO:0048522 positive regulation of cellular process 12.7% (16/126) 2.18 0.0 2e-06
GO:0019222 regulation of metabolic process 25.4% (32/126) 1.35 1e-06 2e-06
GO:0034637 cellular carbohydrate biosynthetic process 10.32% (13/126) 2.48 1e-06 2e-06
GO:0042548 regulation of photosynthesis, light reaction 3.17% (4/126) 5.76 1e-06 3e-06
GO:0042549 photosystem II stabilization 2.38% (3/126) 7.03 1e-06 3e-06
GO:0009653 anatomical structure morphogenesis 15.08% (19/126) 1.87 1e-06 3e-06
GO:0043467 regulation of generation of precursor metabolites and energy 3.17% (4/126) 5.59 1e-06 4e-06
GO:0034762 regulation of transmembrane transport 5.56% (7/126) 3.69 1e-06 4e-06
GO:0034765 regulation of ion transmembrane transport 5.56% (7/126) 3.69 1e-06 4e-06
GO:1990204 oxidoreductase complex 5.56% (7/126) 3.63 2e-06 6e-06
GO:0065008 regulation of biological quality 17.46% (22/126) 1.65 2e-06 6e-06
GO:0051640 organelle localization 6.35% (8/126) 3.3 2e-06 6e-06
GO:0000271 polysaccharide biosynthetic process 10.32% (13/126) 2.33 2e-06 7e-06
GO:0044264 cellular polysaccharide metabolic process 10.32% (13/126) 2.33 2e-06 7e-06
GO:0009965 leaf morphogenesis 6.35% (8/126) 3.2 3e-06 9e-06
GO:0006812 cation transport 11.11% (14/126) 2.16 3e-06 1e-05
GO:0051171 regulation of nitrogen compound metabolic process 21.43% (27/126) 1.37 4e-06 1.2e-05
GO:0050790 regulation of catalytic activity 6.35% (8/126) 3.12 4e-06 1.4e-05
GO:0009744 response to sucrose 6.35% (8/126) 3.06 6e-06 1.8e-05
GO:0051188 cofactor biosynthetic process 9.52% (12/126) 2.31 6e-06 1.9e-05
GO:0010109 regulation of photosynthesis 3.17% (4/126) 5.06 6e-06 1.9e-05
GO:0034285 response to disaccharide 6.35% (8/126) 3.05 6e-06 1.9e-05
GO:0043269 regulation of ion transport 5.56% (7/126) 3.34 6e-06 2e-05
GO:0009642 response to light intensity 7.14% (9/126) 2.79 7e-06 2.1e-05
GO:0016109 tetraterpenoid biosynthetic process 4.76% (6/126) 3.69 7e-06 2.3e-05
GO:0016117 carotenoid biosynthetic process 4.76% (6/126) 3.69 7e-06 2.3e-05
GO:0044262 cellular carbohydrate metabolic process 10.32% (13/126) 2.14 9e-06 2.6e-05
GO:0042254 ribosome biogenesis 4.76% (6/126) 3.63 9e-06 2.9e-05
GO:0009644 response to high light intensity 6.35% (8/126) 2.96 1e-05 3e-05
GO:0016116 carotenoid metabolic process 4.76% (6/126) 3.62 1e-05 3e-05
GO:0016108 tetraterpenoid metabolic process 4.76% (6/126) 3.62 1e-05 3e-05
GO:0009743 response to carbohydrate 7.14% (9/126) 2.71 1e-05 3.1e-05
GO:0060255 regulation of macromolecule metabolic process 21.43% (27/126) 1.29 1.1e-05 3.2e-05
GO:0005976 polysaccharide metabolic process 10.32% (13/126) 2.11 1.1e-05 3.2e-05
GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone) 2.38% (3/126) 6.03 1.1e-05 3.3e-05
GO:0080090 regulation of primary metabolic process 21.43% (27/126) 1.28 1.2e-05 3.6e-05
GO:0048518 positive regulation of biological process 12.7% (16/126) 1.82 1.3e-05 3.8e-05
GO:0022613 ribonucleoprotein complex biogenesis 4.76% (6/126) 3.55 1.3e-05 3.8e-05
GO:0009658 chloroplast organization 6.35% (8/126) 2.89 1.4e-05 4e-05
GO:1905392 plant organ morphogenesis 7.14% (9/126) 2.66 1.4e-05 4.1e-05
GO:0051049 regulation of transport 5.56% (7/126) 3.12 1.7e-05 5e-05
GO:0072598 protein localization to chloroplast 3.97% (5/126) 3.94 1.9e-05 5.6e-05
GO:0072596 establishment of protein localization to chloroplast 3.97% (5/126) 3.94 1.9e-05 5.6e-05
GO:0045036 protein targeting to chloroplast 3.97% (5/126) 3.94 1.9e-05 5.6e-05
GO:0065009 regulation of molecular function 6.35% (8/126) 2.82 2e-05 5.7e-05
GO:0042793 plastid transcription 3.97% (5/126) 3.92 2.1e-05 6e-05
GO:0010242 oxygen evolving activity 1.59% (2/126) 7.76 2.1e-05 6e-05
GO:0019757 glycosinolate metabolic process 5.56% (7/126) 2.91 4.3e-05 0.000122
GO:0016143 S-glycoside metabolic process 5.56% (7/126) 2.91 4.3e-05 0.000122
GO:0019760 glucosinolate metabolic process 5.56% (7/126) 2.91 4.3e-05 0.000122
GO:0051234 establishment of localization 23.02% (29/126) 1.12 4.3e-05 0.000122
GO:0006811 ion transport 11.9% (15/126) 1.7 6e-05 0.000169
GO:0032879 regulation of localization 5.56% (7/126) 2.84 6e-05 0.000169
GO:0030093 chloroplast photosystem I 1.59% (2/126) 7.18 6.3e-05 0.000176
GO:0009639 response to red or far red light 7.14% (9/126) 2.34 7.7e-05 0.000216
GO:0042742 defense response to bacterium 7.14% (9/126) 2.33 8.2e-05 0.000228
GO:0032774 RNA biosynthetic process 6.35% (8/126) 2.52 8.3e-05 0.00023
GO:0008187 poly-pyrimidine tract binding 2.38% (3/126) 5.1 8.7e-05 0.00024
GO:0008266 poly(U) RNA binding 2.38% (3/126) 5.1 8.7e-05 0.00024
GO:0050789 regulation of biological process 30.95% (39/126) 0.86 9.4e-05 0.000257
GO:0015934 large ribosomal subunit 4.76% (6/126) 3.03 0.0001 0.000273
GO:0016051 carbohydrate biosynthetic process 10.32% (13/126) 1.77 0.000117 0.000319
GO:1901657 glycosyl compound metabolic process 5.56% (7/126) 2.68 0.000121 0.000327
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 3.17% (4/126) 3.98 0.000122 0.000328
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 1.59% (2/126) 6.76 0.000125 0.000337
GO:0019761 glucosinolate biosynthetic process 4.76% (6/126) 2.95 0.000135 0.00036
GO:0016144 S-glycoside biosynthetic process 4.76% (6/126) 2.95 0.000135 0.00036
GO:0019758 glycosinolate biosynthetic process 4.76% (6/126) 2.95 0.000135 0.00036
GO:0051179 localization 23.02% (29/126) 1.02 0.000146 0.000387
GO:0005528 FK506 binding 2.38% (3/126) 4.83 0.000158 0.000415
GO:0005527 macrolide binding 2.38% (3/126) 4.83 0.000158 0.000415
GO:0016859 cis-trans isomerase activity 3.17% (4/126) 3.88 0.00016 0.00042
GO:1901659 glycosyl compound biosynthetic process 4.76% (6/126) 2.87 0.000179 0.00047
GO:0051649 establishment of localization in cell 11.9% (15/126) 1.54 0.000204 0.000532
GO:0009768 photosynthesis, light harvesting in photosystem I 1.59% (2/126) 6.44 0.000208 0.000538
GO:0004375 glycine dehydrogenase (decarboxylating) activity 1.59% (2/126) 6.44 0.000208 0.000538
GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 1.59% (2/126) 6.44 0.000208 0.000538
GO:0009416 response to light stimulus 11.9% (15/126) 1.48 0.000307 0.000791
GO:0009643 photosynthetic acclimation 1.59% (2/126) 6.18 0.000311 0.0008
GO:0044391 ribosomal subunit 5.56% (7/126) 2.38 0.000418 0.001071
GO:0050794 regulation of cellular process 26.19% (33/126) 0.83 0.000524 0.001336
GO:0051641 cellular localization 11.9% (15/126) 1.41 0.000528 0.001343
GO:0009617 response to bacterium 7.14% (9/126) 1.96 0.000547 0.001387
GO:0009533 chloroplast stromal thylakoid 1.59% (2/126) 5.76 0.000578 0.00146
GO:0009314 response to radiation 11.9% (15/126) 1.39 0.000589 0.001483
GO:0018208 peptidyl-proline modification 2.38% (3/126) 4.18 0.000608 0.001527
GO:0009055 electron transfer activity 3.17% (4/126) 3.37 0.000621 0.001553
GO:0010205 photoinhibition 1.59% (2/126) 5.59 0.00074 0.001842
GO:0043155 negative regulation of photosynthesis, light reaction 1.59% (2/126) 5.59 0.00074 0.001842
GO:1901606 alpha-amino acid catabolic process 3.97% (5/126) 2.76 0.000885 0.002194
GO:0003727 single-stranded RNA binding 2.38% (3/126) 3.99 0.000893 0.002206
GO:0009063 cellular amino acid catabolic process 3.97% (5/126) 2.75 0.00091 0.002242
GO:0030091 protein repair 1.59% (2/126) 5.44 0.000923 0.002259
GO:0010206 photosystem II repair 1.59% (2/126) 5.44 0.000923 0.002259
GO:0016226 iron-sulfur cluster assembly 3.17% (4/126) 3.13 0.001148 0.002794
GO:0031163 metallo-sulfur cluster assembly 3.17% (4/126) 3.13 0.001148 0.002794
GO:0016114 terpenoid biosynthetic process 4.76% (6/126) 2.33 0.001293 0.003136
GO:1905156 negative regulation of photosynthesis 1.59% (2/126) 5.18 0.001345 0.003253
GO:0097659 nucleic acid-templated transcription 3.97% (5/126) 2.62 0.001387 0.003333
GO:0006351 transcription, DNA-templated 3.97% (5/126) 2.62 0.001387 0.003333
GO:0010310 regulation of hydrogen peroxide metabolic process 3.97% (5/126) 2.55 0.001725 0.004133
GO:0006546 glycine catabolic process 2.38% (3/126) 3.65 0.001783 0.004261
GO:0009765 photosynthesis, light harvesting 1.59% (2/126) 4.96 0.001844 0.004391
GO:0016556 mRNA modification 3.17% (4/126) 2.92 0.001993 0.004705
GO:0009071 serine family amino acid catabolic process 2.38% (3/126) 3.59 0.001988 0.004707
GO:0042135 neurotransmitter catabolic process 2.38% (3/126) 3.59 0.001988 0.004707
GO:0006721 terpenoid metabolic process 4.76% (6/126) 2.2 0.002059 0.004844
GO:0017014 protein nitrosylation 1.59% (2/126) 4.76 0.002417 0.005653
GO:0018119 peptidyl-cysteine S-nitrosylation 1.59% (2/126) 4.76 0.002417 0.005653
GO:0006544 glycine metabolic process 2.38% (3/126) 3.49 0.002441 0.005693
GO:0044085 cellular component biogenesis 4.76% (6/126) 2.14 0.002487 0.005784
GO:0008299 isoprenoid biosynthetic process 4.76% (6/126) 2.14 0.00253 0.005865
GO:0016491 oxidoreductase activity 9.52% (12/126) 1.36 0.002555 0.005907
GO:0006354 DNA-templated transcription, elongation 3.17% (4/126) 2.81 0.00262 0.00604
GO:2000377 regulation of reactive oxygen species metabolic process 3.97% (5/126) 2.41 0.002631 0.006047
GO:0000311 plastid large ribosomal subunit 1.59% (2/126) 4.68 0.002731 0.006239
GO:0018198 peptidyl-cysteine modification 1.59% (2/126) 4.68 0.002731 0.006239
GO:1902494 catalytic complex 6.35% (8/126) 1.75 0.002755 0.006276
GO:0051193 regulation of cofactor metabolic process 3.97% (5/126) 2.39 0.002801 0.006344
GO:0016853 isomerase activity 3.97% (5/126) 2.39 0.002801 0.006344
GO:0030154 cell differentiation 6.35% (8/126) 1.73 0.003024 0.006831
GO:0044550 secondary metabolite biosynthetic process 4.76% (6/126) 2.07 0.003177 0.007154
GO:0043168 anion binding 7.94% (10/126) 1.48 0.003299 0.007408
GO:0005575 cellular_component 97.62% (123/126) 0.1 0.003342 0.007484
GO:0042133 neurotransmitter metabolic process 2.38% (3/126) 3.28 0.003677 0.008211
GO:0006720 isoprenoid metabolic process 4.76% (6/126) 2.02 0.003766 0.008386
GO:0098542 defense response to other organism 8.73% (11/126) 1.36 0.003865 0.008581
GO:0001505 regulation of neurotransmitter levels 2.38% (3/126) 3.24 0.003995 0.008845
GO:0032502 developmental process 21.43% (27/126) 0.76 0.004053 0.008948
GO:0000413 protein peptidyl-prolyl isomerization 1.59% (2/126) 4.37 0.004166 0.009146
GO:0000315 organellar large ribosomal subunit 1.59% (2/126) 4.37 0.004166 0.009146
GO:0051606 detection of stimulus 3.17% (4/126) 2.59 0.004473 0.009793
GO:0018065 protein-cofactor linkage 0.79% (1/126) 7.76 0.004602 0.009828
GO:0097651 phosphatidylinositol 3-kinase complex, class I 0.79% (1/126) 7.76 0.004602 0.009828
GO:0033819 lipoyl(octanoyl) transferase activity 0.79% (1/126) 7.76 0.004602 0.009828
GO:0009780 photosynthetic NADP+ reduction 0.79% (1/126) 7.76 0.004602 0.009828
GO:0005943 phosphatidylinositol 3-kinase complex, class IA 0.79% (1/126) 7.76 0.004602 0.009828
GO:0090391 granum assembly 0.79% (1/126) 7.76 0.004602 0.009828
GO:0006740 NADPH regeneration 0.79% (1/126) 7.76 0.004602 0.009828
GO:0009249 protein lipoylation 0.79% (1/126) 7.76 0.004602 0.009828
GO:0006810 transport 18.25% (23/126) 0.83 0.004509 0.009844
GO:0009072 aromatic amino acid family metabolic process 3.97% (5/126) 2.18 0.005134 0.010937
GO:0005975 carbohydrate metabolic process 10.32% (13/126) 1.15 0.005839 0.012405
GO:0006605 protein targeting 7.14% (9/126) 1.39 0.00763 0.016165
GO:0019748 secondary metabolic process 6.35% (8/126) 1.5 0.007763 0.016403
GO:0072330 monocarboxylic acid biosynthetic process 7.14% (9/126) 1.38 0.00802 0.016899
GO:0005942 phosphatidylinositol 3-kinase complex 0.79% (1/126) 6.76 0.009182 0.019043
GO:0010729 positive regulation of hydrogen peroxide biosynthetic process 0.79% (1/126) 6.76 0.009182 0.019043
GO:0010726 positive regulation of hydrogen peroxide metabolic process 0.79% (1/126) 6.76 0.009182 0.019043
GO:0009344 nitrite reductase complex [NAD(P)H] 0.79% (1/126) 6.76 0.009182 0.019043
GO:0009782 photosystem I antenna complex 0.79% (1/126) 6.76 0.009182 0.019043
GO:1903428 positive regulation of reactive oxygen species biosynthetic process 0.79% (1/126) 6.76 0.009182 0.019043
GO:0018193 peptidyl-amino acid modification 4.76% (6/126) 1.7 0.010638 0.022004
GO:0010033 response to organic substance 14.29% (18/126) 0.84 0.011605 0.023941
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors 1.59% (2/126) 3.59 0.011949 0.024585
GO:0009595 detection of biotic stimulus 2.38% (3/126) 2.65 0.012363 0.025372
GO:0010319 stromule 1.59% (2/126) 3.55 0.012594 0.025778
GO:0017118 lipoyltransferase activity 0.79% (1/126) 6.18 0.013742 0.027554
GO:0030385 ferredoxin:thioredoxin reductase activity 0.79% (1/126) 6.18 0.013742 0.027554
GO:0051194 positive regulation of cofactor metabolic process 0.79% (1/126) 6.18 0.013742 0.027554
GO:0042550 photosystem I stabilization 0.79% (1/126) 6.18 0.013742 0.027554
GO:0051087 chaperone binding 0.79% (1/126) 6.18 0.013742 0.027554
GO:1903426 regulation of reactive oxygen species biosynthetic process 0.79% (1/126) 6.18 0.013742 0.027554
GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly 0.79% (1/126) 6.18 0.013742 0.027554
GO:0010728 regulation of hydrogen peroxide biosynthetic process 0.79% (1/126) 6.18 0.013742 0.027554
GO:0034613 cellular protein localization 7.14% (9/126) 1.23 0.014999 0.029998
GO:0023014 signal transduction by protein phosphorylation 3.17% (4/126) 2.08 0.01528 0.030405
GO:0000165 MAPK cascade 3.17% (4/126) 2.08 0.01528 0.030405
GO:0009697 salicylic acid biosynthetic process 3.17% (4/126) 2.06 0.015776 0.031314
GO:0035436 triose phosphate transmembrane transport 0.79% (1/126) 5.76 0.018281 0.035304
GO:0070141 response to UV-A 0.79% (1/126) 5.76 0.018281 0.035304
GO:0071492 cellular response to UV-A 0.79% (1/126) 5.76 0.018281 0.035304
GO:0051920 peroxiredoxin activity 0.79% (1/126) 5.76 0.018281 0.035304
GO:0071917 triose-phosphate transmembrane transporter activity 0.79% (1/126) 5.76 0.018281 0.035304
GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors 0.79% (1/126) 5.76 0.018281 0.035304
GO:0019464 glycine decarboxylation via glycine cleavage system 0.79% (1/126) 5.76 0.018281 0.035304
GO:0015717 triose phosphate transport 0.79% (1/126) 5.76 0.018281 0.035304
GO:0005960 glycine cleavage complex 0.79% (1/126) 5.76 0.018281 0.035304
GO:0010257 NADH dehydrogenase complex assembly 0.79% (1/126) 5.76 0.018281 0.035304
GO:0009696 salicylic acid metabolic process 3.17% (4/126) 2.01 0.017864 0.035367
GO:0046189 phenol-containing compound biosynthetic process 3.17% (4/126) 2.0 0.018411 0.035469
GO:0070727 cellular macromolecule localization 7.14% (9/126) 1.17 0.019187 0.036873
GO:0018958 phenol-containing compound metabolic process 3.17% (4/126) 1.92 0.021915 0.042012
GO:0003913 DNA photolyase activity 0.79% (1/126) 5.44 0.022799 0.043389
GO:0004550 nucleoside diphosphate kinase activity 0.79% (1/126) 5.44 0.022799 0.043389
GO:2000379 positive regulation of reactive oxygen species metabolic process 0.79% (1/126) 5.44 0.022799 0.043389
GO:0006886 intracellular protein transport 7.14% (9/126) 1.12 0.023574 0.044756
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 1.59% (2/126) 3.04 0.024845 0.047056
GO:0043412 macromolecule modification 12.7% (16/126) 0.77 0.025312 0.047826
GO:0009409 response to cold 5.56% (7/126) 1.28 0.025943 0.0489
GO:0042737 drug catabolic process 2.38% (3/126) 2.24 0.026013 0.048914
GO:0009814 defense response, incompatible interaction 3.97% (5/126) 1.58 0.026502 0.049715
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_131 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_164 0.021 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_71 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_85 0.032 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_4 0.028 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_8 0.132 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_9 0.039 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_16 0.018 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_61 0.11 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_84 0.018 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_87 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.07 Gene family Compare
Oryza sativa HCCA cluster Cluster_21 0.041 Gene family Compare
Oryza sativa HCCA cluster Cluster_153 0.028 Gene family Compare
Oryza sativa HCCA cluster Cluster_159 0.023 Gene family Compare
Oryza sativa HCCA cluster Cluster_170 0.084 Gene family Compare
Oryza sativa HCCA cluster Cluster_223 0.099 Gene family Compare
Oryza sativa HCCA cluster Cluster_256 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_299 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_65 0.061 Gene family Compare
Picea abies HCCA cluster Cluster_186 0.041 Gene family Compare
Picea abies HCCA cluster Cluster_205 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_332 0.051 Gene family Compare
Picea abies HCCA cluster Cluster_373 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_401 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_427 0.024 Gene family Compare
Picea abies HCCA cluster Cluster_428 0.027 Gene family Compare
Picea abies HCCA cluster Cluster_476 0.045 Gene family Compare
Picea abies HCCA cluster Cluster_478 0.023 Gene family Compare
Picea abies HCCA cluster Cluster_492 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_11 0.062 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_25 0.038 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_155 0.049 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_203 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_17 0.029 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.028 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_123 0.096 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_141 0.025 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_145 0.025 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_149 0.114 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_183 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_206 0.022 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_214 0.066 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_234 0.081 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_291 0.043 Gene family Compare
Vitis vinifera HCCA cluster Cluster_38 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_55 0.118 Gene family Compare
Vitis vinifera HCCA cluster Cluster_81 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_95 0.125 Gene family Compare
Vitis vinifera HCCA cluster Cluster_120 0.087 Gene family Compare
Vitis vinifera HCCA cluster Cluster_203 0.026 Gene family Compare
Vitis vinifera HCCA cluster Cluster_211 0.056 Gene family Compare
Zea mays HCCA cluster Cluster_53 0.024 Gene family Compare
Zea mays HCCA cluster Cluster_69 0.132 Gene family Compare
Zea mays HCCA cluster Cluster_75 0.182 Gene family Compare
Zea mays HCCA cluster Cluster_176 0.04 Gene family Compare
Zea mays HCCA cluster Cluster_192 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_246 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_258 0.059 Gene family Compare
Zea mays HCCA cluster Cluster_313 0.04 Gene family Compare
Sequences (126) (download table)

InterPro Domains

GO Terms

Family Terms