Coexpression cluster: Cluster_220 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044271 cellular nitrogen compound biosynthetic process 24.56% (14/57) 3.89 0.0 0.0
GO:0044249 cellular biosynthetic process 24.56% (14/57) 3.41 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 21.05% (12/57) 3.92 0.0 0.0
GO:0043043 peptide biosynthetic process 17.54% (10/57) 4.32 0.0 0.0
GO:0009059 macromolecule biosynthetic process 21.05% (12/57) 3.86 0.0 0.0
GO:0003735 structural constituent of ribosome 17.54% (10/57) 4.32 0.0 0.0
GO:0006518 peptide metabolic process 17.54% (10/57) 4.28 0.0 0.0
GO:0043604 amide biosynthetic process 17.54% (10/57) 4.28 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 26.32% (15/57) 3.16 0.0 0.0
GO:0005622 intracellular 15.79% (9/57) 4.84 0.0 0.0
GO:0006412 translation 17.54% (10/57) 4.34 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 21.05% (12/57) 3.95 0.0 0.0
GO:1901576 organic substance biosynthetic process 24.56% (14/57) 3.34 0.0 0.0
GO:0032991 protein-containing complex 24.56% (14/57) 3.34 0.0 0.0
GO:0043603 cellular amide metabolic process 17.54% (10/57) 4.24 0.0 0.0
GO:0005198 structural molecule activity 17.54% (10/57) 4.21 0.0 0.0
GO:1990904 ribonucleoprotein complex 17.54% (10/57) 4.19 0.0 0.0
GO:0009058 biosynthetic process 24.56% (14/57) 3.19 0.0 0.0
GO:0044464 cell part 28.07% (16/57) 2.81 0.0 0.0
GO:0005840 ribosome 15.79% (9/57) 4.22 0.0 0.0
GO:0044424 intracellular part 26.32% (15/57) 2.8 0.0 0.0
GO:0044444 cytoplasmic part 19.3% (11/57) 3.52 0.0 0.0
GO:0043228 non-membrane-bounded organelle 15.79% (9/57) 4.07 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 15.79% (9/57) 4.07 0.0 0.0
GO:0044237 cellular metabolic process 35.09% (20/57) 2.15 0.0 0.0
GO:0008152 metabolic process 43.86% (25/57) 1.7 0.0 0.0
GO:0009987 cellular process 36.84% (21/57) 1.9 0.0 0.0
GO:0019843 rRNA binding 7.02% (4/57) 6.61 0.0 1e-06
GO:0043229 intracellular organelle 17.54% (10/57) 3.08 0.0 2e-06
GO:0043226 organelle 17.54% (10/57) 3.08 0.0 2e-06
GO:0005575 cellular_component 29.82% (17/57) 1.93 1e-06 6e-06
GO:0048038 quinone binding 5.26% (3/57) 6.2 9e-06 5.6e-05
GO:0006807 nitrogen compound metabolic process 26.32% (15/57) 1.83 1.2e-05 7.1e-05
GO:0009767 photosynthetic electron transport chain 5.26% (3/57) 6.03 1.3e-05 7.3e-05
GO:0019684 photosynthesis, light reaction 5.26% (3/57) 6.03 1.3e-05 7.3e-05
GO:1901564 organonitrogen compound metabolic process 22.81% (13/57) 1.93 2.5e-05 0.000133
GO:0044260 cellular macromolecule metabolic process 21.05% (12/57) 2.03 2.8e-05 0.000146
GO:0008150 biological_process 45.61% (26/57) 1.11 3.1e-05 0.000156
GO:0022900 electron transport chain 5.26% (3/57) 5.52 3.9e-05 0.000194
GO:0016651 oxidoreductase activity, acting on NAD(P)H 5.26% (3/57) 5.48 4.2e-05 0.000204
GO:0044267 cellular protein metabolic process 17.54% (10/57) 2.12 8.6e-05 0.000405
GO:0051287 NAD binding 5.26% (3/57) 5.11 9.1e-05 0.00042
GO:0044238 primary metabolic process 26.32% (15/57) 1.53 0.000133 0.000597
GO:1902600 proton transmembrane transport 5.26% (3/57) 4.73 0.000201 0.000881
GO:0071704 organic substance metabolic process 26.32% (15/57) 1.46 0.00022 0.000945
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 3.51% (2/57) 6.35 0.000272 0.001028
GO:0009772 photosynthetic electron transport in photosystem II 3.51% (2/57) 6.35 0.000272 0.001028
GO:0009126 purine nucleoside monophosphate metabolic process 5.26% (3/57) 4.54 0.0003 0.001051
GO:0009167 purine ribonucleoside monophosphate metabolic process 5.26% (3/57) 4.54 0.0003 0.001051
GO:0009161 ribonucleoside monophosphate metabolic process 5.26% (3/57) 4.54 0.0003 0.001051
GO:0009123 nucleoside monophosphate metabolic process 5.26% (3/57) 4.54 0.0003 0.001051
GO:0009205 purine ribonucleoside triphosphate metabolic process 5.26% (3/57) 4.59 0.000267 0.001053
GO:0009144 purine nucleoside triphosphate metabolic process 5.26% (3/57) 4.59 0.000267 0.001053
GO:0009199 ribonucleoside triphosphate metabolic process 5.26% (3/57) 4.59 0.000267 0.001053
GO:0009141 nucleoside triphosphate metabolic process 5.26% (3/57) 4.52 0.000311 0.001053
GO:0009521 photosystem 5.26% (3/57) 4.52 0.000311 0.001053
GO:0046034 ATP metabolic process 5.26% (3/57) 4.61 0.000257 0.001078
GO:0006091 generation of precursor metabolites and energy 5.26% (3/57) 4.48 0.000334 0.001094
GO:0098796 membrane protein complex 7.02% (4/57) 3.61 0.000333 0.001108
GO:0043170 macromolecule metabolic process 21.05% (12/57) 1.64 0.000369 0.001186
GO:0044436 thylakoid part 5.26% (3/57) 4.37 0.000425 0.001346
GO:0009259 ribonucleotide metabolic process 5.26% (3/57) 4.35 0.000439 0.001346
GO:0009150 purine ribonucleotide metabolic process 5.26% (3/57) 4.35 0.000439 0.001346
GO:0034654 nucleobase-containing compound biosynthetic process 7.02% (4/57) 3.47 0.000476 0.001436
GO:0006163 purine nucleotide metabolic process 5.26% (3/57) 4.3 0.000484 0.001436
GO:0072521 purine-containing compound metabolic process 5.26% (3/57) 4.29 0.000499 0.00146
GO:0019693 ribose phosphate metabolic process 5.26% (3/57) 4.27 0.000515 0.001483
GO:0019538 protein metabolic process 17.54% (10/57) 1.79 0.000539 0.001529
GO:0015672 monovalent inorganic cation transport 5.26% (3/57) 4.21 0.000581 0.001624
GO:0098662 inorganic cation transmembrane transport 5.26% (3/57) 4.16 0.000652 0.001747
GO:0098660 inorganic ion transmembrane transport 5.26% (3/57) 4.16 0.000652 0.001747
GO:0098655 cation transmembrane transport 5.26% (3/57) 4.16 0.000652 0.001747
GO:0009117 nucleotide metabolic process 5.26% (3/57) 4.11 0.000708 0.001848
GO:0009579 thylakoid 3.51% (2/57) 5.67 0.000708 0.001871
GO:0006753 nucleoside phosphate metabolic process 5.26% (3/57) 4.06 0.000789 0.00203
GO:0034220 ion transmembrane transport 5.26% (3/57) 4.02 0.000853 0.002166
GO:0055114 oxidation-reduction process 14.04% (8/57) 1.98 0.000901 0.002258
GO:0015985 energy coupled proton transport, down electrochemical gradient 3.51% (2/57) 5.45 0.000965 0.0023
GO:0015986 ATP synthesis coupled proton transport 3.51% (2/57) 5.45 0.000965 0.0023
GO:0018130 heterocycle biosynthetic process 7.02% (4/57) 3.2 0.000951 0.002323
GO:0019438 aromatic compound biosynthetic process 7.02% (4/57) 3.2 0.000951 0.002323
GO:0003723 RNA binding 7.02% (4/57) 3.18 0.001019 0.002398
GO:0055086 nucleobase-containing small molecule metabolic process 5.26% (3/57) 3.81 0.001306 0.003038
GO:1901362 organic cyclic compound biosynthetic process 7.02% (4/57) 3.07 0.001324 0.003043
GO:0017144 drug metabolic process 5.26% (3/57) 3.78 0.001394 0.003165
GO:0009522 photosystem I 3.51% (2/57) 4.94 0.001967 0.004413
GO:1901135 carbohydrate derivative metabolic process 5.26% (3/57) 3.55 0.002191 0.00486
GO:0048037 cofactor binding 10.53% (6/57) 2.15 0.002293 0.005028
GO:0019637 organophosphate metabolic process 5.26% (3/57) 3.4 0.00293 0.006354
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 3.51% (2/57) 4.45 0.003818 0.008188
GO:0006139 nucleobase-containing compound metabolic process 8.77% (5/57) 2.24 0.004145 0.008791
GO:0034062 5'-3' RNA polymerase activity 3.51% (2/57) 4.3 0.004659 0.009669
GO:0097747 RNA polymerase activity 3.51% (2/57) 4.3 0.004659 0.009669
GO:0009142 nucleoside triphosphate biosynthetic process 3.51% (2/57) 4.23 0.005109 0.010061
GO:0009201 ribonucleoside triphosphate biosynthetic process 3.51% (2/57) 4.23 0.005109 0.010061
GO:0006754 ATP biosynthetic process 3.51% (2/57) 4.23 0.005109 0.010061
GO:0009145 purine nucleoside triphosphate biosynthetic process 3.51% (2/57) 4.23 0.005109 0.010061
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 3.51% (2/57) 4.23 0.005109 0.010061
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 3.51% (2/57) 4.15 0.005738 0.010858
GO:0009156 ribonucleoside monophosphate biosynthetic process 3.51% (2/57) 4.15 0.005738 0.010858
GO:0009124 nucleoside monophosphate biosynthetic process 3.51% (2/57) 4.15 0.005738 0.010858
GO:0009127 purine nucleoside monophosphate biosynthetic process 3.51% (2/57) 4.15 0.005738 0.010858
GO:0015979 photosynthesis 3.51% (2/57) 4.13 0.005901 0.011057
GO:0046483 heterocycle metabolic process 8.77% (5/57) 2.11 0.005964 0.011067
GO:0006725 cellular aromatic compound metabolic process 8.77% (5/57) 2.1 0.006104 0.01122
GO:0009152 purine ribonucleotide biosynthetic process 3.51% (2/57) 4.07 0.006401 0.011439
GO:0009260 ribonucleotide biosynthetic process 3.51% (2/57) 4.07 0.006401 0.011439
GO:0046390 ribose phosphate biosynthetic process 3.51% (2/57) 4.07 0.006401 0.011439
GO:1901360 organic cyclic compound metabolic process 8.77% (5/57) 2.07 0.006767 0.011982
GO:0006164 purine nucleotide biosynthetic process 3.51% (2/57) 4.01 0.00692 0.012142
GO:0072522 purine-containing compound biosynthetic process 3.51% (2/57) 3.99 0.007097 0.012341
GO:0006812 cation transport 5.26% (3/57) 2.83 0.008723 0.015032
GO:0009165 nucleotide biosynthetic process 3.51% (2/57) 3.81 0.00898 0.015203
GO:1901293 nucleoside phosphate biosynthetic process 3.51% (2/57) 3.81 0.00898 0.015203
GO:0015934 large ribosomal subunit 1.75% (1/57) 6.67 0.009766 0.016249
GO:0044391 ribosomal subunit 1.75% (1/57) 6.67 0.009766 0.016249
GO:0097659 nucleic acid-templated transcription 3.51% (2/57) 3.72 0.010205 0.016692
GO:0006351 transcription, DNA-templated 3.51% (2/57) 3.72 0.010205 0.016692
GO:1901137 carbohydrate derivative biosynthetic process 3.51% (2/57) 3.7 0.010416 0.016894
GO:0097159 organic cyclic compound binding 22.81% (13/57) 0.99 0.010915 0.01741
GO:1901363 heterocyclic compound binding 22.81% (13/57) 0.99 0.010915 0.01741
GO:0050662 coenzyme binding 5.26% (3/57) 2.58 0.013922 0.022025
GO:0016779 nucleotidyltransferase activity 3.51% (2/57) 3.4 0.015536 0.024377
GO:0090407 organophosphate biosynthetic process 3.51% (2/57) 3.37 0.016045 0.024973
GO:0032774 RNA biosynthetic process 3.51% (2/57) 3.29 0.017883 0.027392
GO:0017004 cytochrome complex assembly 1.75% (1/57) 5.8 0.017833 0.027534
GO:0016168 chlorophyll binding 1.75% (1/57) 5.67 0.019438 0.02954
GO:0006811 ion transport 5.26% (3/57) 2.38 0.019962 0.030099
GO:0044281 small molecule metabolic process 5.26% (3/57) 2.3 0.023203 0.034714
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 1.75% (1/57) 5.35 0.02424 0.035987
GO:0009055 electron transfer activity 3.51% (2/57) 2.92 0.028961 0.042668
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_79 0.037 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_80 0.196 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_165 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_21 0.049 Gene family Compare
Oryza sativa HCCA cluster Cluster_83 0.049 Gene family Compare
Oryza sativa HCCA cluster Cluster_89 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_91 0.036 Gene family Compare
Oryza sativa HCCA cluster Cluster_139 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_157 0.035 Gene family Compare
Oryza sativa HCCA cluster Cluster_188 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_243 0.062 Gene family Compare
Oryza sativa HCCA cluster Cluster_326 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_334 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_494 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_195 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_28 0.09 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_2 0.049 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_3 0.032 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_4 0.039 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_27 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_29 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_110 0.032 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_114 0.061 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_120 0.091 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_132 0.032 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_191 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_12 0.056 Gene family Compare
Vitis vinifera HCCA cluster Cluster_64 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_187 0.03 Gene family Compare
Sequences (57) (download table)

InterPro Domains

GO Terms

Family Terms