Coexpression cluster: Cluster_215 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009648 photoperiodism 9.84% (6/61) 4.08 1e-06 0.000454
GO:0048573 photoperiodism, flowering 9.84% (6/61) 4.15 1e-06 0.000698
GO:0035061 interchromatin granule 3.28% (2/61) 8.23 1.5e-05 0.001784
GO:0005634 nucleus 60.66% (37/61) 0.84 1.8e-05 0.001796
GO:0016071 mRNA metabolic process 11.48% (7/61) 3.17 1.2e-05 0.001896
GO:0006397 mRNA processing 8.2% (5/61) 4.14 1e-05 0.001948
GO:0044424 intracellular part 93.44% (57/61) 0.38 2.5e-05 0.002217
GO:0000375 RNA splicing, via transesterification reactions 6.56% (4/61) 4.07 9.7e-05 0.00394
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 6.56% (4/61) 4.07 9.7e-05 0.00394
GO:0006402 mRNA catabolic process 6.56% (4/61) 4.1 9e-05 0.004225
GO:0008565 protein transporter activity 6.56% (4/61) 4.02 0.000112 0.004259
GO:0000398 mRNA splicing, via spliceosome 6.56% (4/61) 4.23 6.4e-05 0.004305
GO:0043687 post-translational protein modification 6.56% (4/61) 4.23 6.4e-05 0.004305
GO:0000956 nuclear-transcribed mRNA catabolic process 6.56% (4/61) 4.11 8.7e-05 0.00441
GO:0006401 RNA catabolic process 6.56% (4/61) 3.98 0.000124 0.004444
GO:0044743 protein transmembrane import into intracellular organelle 6.56% (4/61) 4.14 8e-05 0.004461
GO:0071806 protein transmembrane transport 6.56% (4/61) 3.93 0.000141 0.004542
GO:0065002 intracellular protein transmembrane transport 6.56% (4/61) 3.93 0.000141 0.004542
GO:0044464 cell part 96.72% (59/61) 0.29 7.5e-05 0.004563
GO:0008380 RNA splicing 8.2% (5/61) 3.03 0.000364 0.011107
GO:0003676 nucleic acid binding 21.31% (13/61) 1.45 0.000709 0.019661
GO:0009410 response to xenobiotic stimulus 4.92% (3/61) 4.13 0.000684 0.019877
GO:0044265 cellular macromolecule catabolic process 9.84% (6/61) 2.42 0.00089 0.023605
GO:0043574 peroxisomal transport 4.92% (3/61) 3.81 0.001297 0.023976
GO:0017038 protein import 6.56% (4/61) 3.08 0.001291 0.024604
GO:0006625 protein targeting to peroxisome 4.92% (3/61) 3.83 0.001259 0.024765
GO:0072662 protein localization to peroxisome 4.92% (3/61) 3.83 0.001259 0.024765
GO:0072663 establishment of protein localization to peroxisome 4.92% (3/61) 3.83 0.001259 0.024765
GO:0003723 RNA binding 9.84% (6/61) 2.39 0.000995 0.025285
GO:0016607 nuclear speck 3.28% (2/61) 5.17 0.001417 0.025422
GO:0009416 response to light stimulus 14.75% (9/61) 1.79 0.001048 0.025561
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex 3.28% (2/61) 5.35 0.001096 0.025708
GO:0015919 peroxisomal membrane transport 4.92% (3/61) 3.86 0.001184 0.025786
GO:0016558 protein import into peroxisome matrix 4.92% (3/61) 3.86 0.001184 0.025786
GO:0009314 response to radiation 14.75% (9/61) 1.7 0.001616 0.028158
GO:0009116 nucleoside metabolic process 3.28% (2/61) 4.95 0.001907 0.028367
GO:0006396 RNA processing 11.48% (7/61) 2.01 0.001687 0.028593
GO:0006807 nitrogen compound metabolic process 36.07% (22/61) 0.88 0.001894 0.028885
GO:0044428 nuclear part 9.84% (6/61) 2.22 0.001775 0.029259
GO:0043226 organelle 80.33% (49/61) 0.37 0.001888 0.029525
GO:0043229 intracellular organelle 80.33% (49/61) 0.37 0.001867 0.029976
GO:0047345 ribose-5-phosphate adenylyltransferase activity 1.64% (1/61) 8.81 0.002228 0.030198
GO:0030327 prenylated protein catabolic process 1.64% (1/61) 8.81 0.002228 0.030198
GO:0001735 prenylcysteine oxidase activity 1.64% (1/61) 8.81 0.002228 0.030198
GO:0007031 peroxisome organization 4.92% (3/61) 3.51 0.00234 0.031037
GO:0043170 macromolecule metabolic process 32.79% (20/61) 0.93 0.002227 0.032346
GO:0044451 nucleoplasm part 4.92% (3/61) 3.44 0.002694 0.034962
GO:0031328 positive regulation of cellular biosynthetic process 8.2% (5/61) 2.21 0.0045 0.036598
GO:0016070 RNA metabolic process 14.75% (9/61) 1.54 0.003425 0.036651
GO:0043227 membrane-bounded organelle 78.69% (48/61) 0.35 0.003365 0.036657
GO:0008649 rRNA methyltransferase activity 1.64% (1/61) 7.81 0.004451 0.036687
GO:0016433 rRNA (adenine) methyltransferase activity 1.64% (1/61) 7.81 0.004451 0.036687
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity 1.64% (1/61) 7.81 0.004451 0.036687
GO:0000154 rRNA modification 1.64% (1/61) 7.81 0.004451 0.036687
GO:0140102 catalytic activity, acting on a rRNA 1.64% (1/61) 7.81 0.004451 0.036687
GO:0008930 methylthioadenosine nucleosidase activity 1.64% (1/61) 7.81 0.004451 0.036687
GO:0009057 macromolecule catabolic process 9.84% (6/61) 2.08 0.002951 0.036742
GO:1903508 positive regulation of nucleic acid-templated transcription 8.2% (5/61) 2.31 0.00334 0.03704
GO:0045893 positive regulation of transcription, DNA-templated 8.2% (5/61) 2.31 0.00334 0.03704
GO:0051254 positive regulation of RNA metabolic process 8.2% (5/61) 2.31 0.00334 0.03704
GO:1902680 positive regulation of RNA biosynthetic process 8.2% (5/61) 2.31 0.00334 0.03704
GO:0044238 primary metabolic process 39.34% (24/61) 0.73 0.004628 0.037143
GO:0016604 nuclear body 3.28% (2/61) 4.26 0.004948 0.03726
GO:0051173 positive regulation of nitrogen compound metabolic process 8.2% (5/61) 2.18 0.004902 0.037377
GO:0035196 production of miRNAs involved in gene silencing by miRNA 4.92% (3/61) 3.4 0.002947 0.037446
GO:0044260 cellular macromolecule metabolic process 26.23% (16/61) 0.99 0.004877 0.037654
GO:0072594 establishment of protein localization to organelle 8.2% (5/61) 2.26 0.003836 0.037743
GO:0010604 positive regulation of macromolecule metabolic process 8.2% (5/61) 2.16 0.005198 0.037748
GO:0070918 production of small RNA involved in gene silencing by RNA 4.92% (3/61) 3.24 0.004023 0.037753
GO:0031050 dsRNA fragmentation 4.92% (3/61) 3.24 0.004023 0.037753
GO:0050789 regulation of biological process 31.15% (19/61) 0.87 0.005078 0.037776
GO:0031090 organelle membrane 9.84% (6/61) 1.9 0.005272 0.037832
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity 3.28% (2/61) 4.49 0.003606 0.037923
GO:0006886 intracellular protein transport 11.48% (7/61) 1.8 0.003799 0.037985
GO:0015031 protein transport 11.48% (7/61) 1.74 0.004865 0.038047
GO:0045184 establishment of protein localization 11.48% (7/61) 1.74 0.004865 0.038047
GO:0008104 protein localization 11.48% (7/61) 1.72 0.005179 0.03806
GO:0010628 positive regulation of gene expression 8.2% (5/61) 2.24 0.004122 0.038095
GO:0033365 protein localization to organelle 8.2% (5/61) 2.26 0.003942 0.038164
GO:0010557 positive regulation of macromolecule biosynthetic process 8.2% (5/61) 2.23 0.004233 0.038536
GO:0030422 production of siRNA involved in RNA interference 4.92% (3/61) 3.27 0.003791 0.038542
GO:0090304 nucleic acid metabolic process 18.03% (11/61) 1.3 0.0043 0.038569
GO:0055085 transmembrane transport 6.56% (4/61) 2.72 0.00323 0.038634
GO:0022884 macromolecule transmembrane transporter activity 3.28% (2/61) 4.17 0.005583 0.038698
GO:0008320 protein transmembrane transporter activity 3.28% (2/61) 4.17 0.005583 0.038698
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 8.2% (5/61) 2.27 0.003767 0.038948
GO:0031325 positive regulation of cellular metabolic process 8.2% (5/61) 2.14 0.005507 0.039061
GO:0043231 intracellular membrane-bounded organelle 78.69% (48/61) 0.36 0.003213 0.0392
GO:1904680 peptide transmembrane transporter activity 3.28% (2/61) 4.03 0.006719 0.042697
GO:0005483 soluble NSF attachment protein activity 1.64% (1/61) 7.23 0.006669 0.042819
GO:0032106 positive regulation of response to extracellular stimulus 1.64% (1/61) 7.23 0.006669 0.042819
GO:0045039 protein import into mitochondrial inner membrane 1.64% (1/61) 7.23 0.006669 0.042819
GO:0032109 positive regulation of response to nutrient levels 1.64% (1/61) 7.23 0.006669 0.042819
GO:0090151 establishment of protein localization to mitochondrial membrane 1.64% (1/61) 7.23 0.006669 0.042819
GO:0080040 positive regulation of cellular response to phosphate starvation 1.64% (1/61) 7.23 0.006669 0.042819
GO:0034655 nucleobase-containing compound catabolic process 6.56% (4/61) 2.44 0.006303 0.043201
GO:0005515 protein binding 18.03% (11/61) 1.21 0.006964 0.043796
GO:0048522 positive regulation of cellular process 9.84% (6/61) 1.81 0.007075 0.044036
GO:0033036 macromolecule localization 11.48% (7/61) 1.63 0.007278 0.044844
GO:0046907 intracellular transport 11.48% (7/61) 1.61 0.007741 0.047219
GO:0016567 protein ubiquitination 4.92% (3/61) 2.81 0.009065 0.048938
GO:0042886 amide transport 11.48% (7/61) 1.57 0.008994 0.048983
GO:0010468 regulation of gene expression 18.03% (11/61) 1.16 0.008946 0.049161
GO:0043102 amino acid salvage 1.64% (1/61) 6.81 0.008882 0.049253
GO:0032107 regulation of response to nutrient levels 1.64% (1/61) 6.81 0.008882 0.049253
GO:0019509 L-methionine salvage from methylthioadenosine 1.64% (1/61) 6.81 0.008882 0.049253
GO:0032104 regulation of response to extracellular stimulus 1.64% (1/61) 6.81 0.008882 0.049253
GO:0071267 L-methionine salvage 1.64% (1/61) 6.81 0.008882 0.049253
GO:0007006 mitochondrial membrane organization 1.64% (1/61) 6.81 0.008882 0.049253
GO:0007007 inner mitochondrial membrane organization 1.64% (1/61) 6.81 0.008882 0.049253
GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor 1.64% (1/61) 6.81 0.008882 0.049253
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_6 0.026 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_95 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_98 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_135 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_143 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_157 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_187 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_206 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_234 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_240 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_261 0.025 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_75 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_184 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_91 0.026 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_120 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_158 0.022 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_165 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_2 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_8 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_41 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_137 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_175 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_182 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_185 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_205 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_254 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_258 0.026 Gene family Compare
Oryza sativa HCCA cluster Cluster_271 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_273 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_289 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_297 0.025 Gene family Compare
Oryza sativa HCCA cluster Cluster_309 0.023 Gene family Compare
Oryza sativa HCCA cluster Cluster_317 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_321 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_327 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_328 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_68 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_210 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_343 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_369 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_383 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_394 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_442 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_482 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_42 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_59 0.033 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_95 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_100 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_121 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_122 0.023 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_131 0.021 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_135 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_211 0.046 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_217 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_219 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_243 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_254 0.02 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_283 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_297 0.049 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_301 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_313 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_10 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_26 0.023 Gene family Compare
Vitis vinifera HCCA cluster Cluster_56 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_72 0.033 Gene family Compare
Vitis vinifera HCCA cluster Cluster_99 0.025 Gene family Compare
Vitis vinifera HCCA cluster Cluster_107 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_121 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_123 0.024 Gene family Compare
Vitis vinifera HCCA cluster Cluster_124 0.029 Gene family Compare
Vitis vinifera HCCA cluster Cluster_128 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_170 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_171 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_193 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_202 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_231 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_245 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_248 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_16 0.028 Gene family Compare
Zea mays HCCA cluster Cluster_38 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_42 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_72 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_74 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_78 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_112 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_154 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_160 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_172 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_214 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_231 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_242 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_253 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_257 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_262 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_281 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_290 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_306 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_340 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_341 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_342 0.023 Gene family Compare
Zea mays HCCA cluster Cluster_352 0.019 Gene family Compare
Sequences (61) (download table)

InterPro Domains

GO Terms

Family Terms