Coexpression cluster: Cluster_186 (HCCA cluster)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 11.33% (17/150) 2.59 0.0 1e-06
GO:0006418 tRNA aminoacylation for protein translation 4.0% (6/150) 5.3 0.0 1e-06
GO:0009654 photosystem II oxygen evolving complex 2.67% (4/150) 7.3 0.0 1e-06
GO:0044436 thylakoid part 3.33% (5/150) 6.0 0.0 1e-06
GO:0140101 catalytic activity, acting on a tRNA 4.67% (7/150) 4.96 0.0 1e-06
GO:0043039 tRNA aminoacylation 4.0% (6/150) 5.08 0.0 1e-06
GO:0043038 amino acid activation 4.0% (6/150) 5.08 0.0 1e-06
GO:0009523 photosystem II 2.67% (4/150) 6.98 0.0 1e-06
GO:0044237 cellular metabolic process 17.33% (26/150) 1.66 0.0 5e-06
GO:0006399 tRNA metabolic process 4.0% (6/150) 4.53 0.0 6e-06
GO:1990204 oxidoreductase complex 2.67% (4/150) 6.19 0.0 7e-06
GO:1901566 organonitrogen compound biosynthetic process 7.33% (11/150) 2.94 0.0 7e-06
GO:0033014 tetrapyrrole biosynthetic process 2.67% (4/150) 6.08 0.0 7e-06
GO:0044271 cellular nitrogen compound biosynthetic process 7.33% (11/150) 2.88 0.0 8e-06
GO:0015979 photosynthesis 2.67% (4/150) 5.98 0.0 9e-06
GO:0019898 extrinsic component of membrane 2.0% (3/150) 7.3 1e-06 1.2e-05
GO:0034660 ncRNA metabolic process 4.0% (6/150) 4.23 1e-06 1.2e-05
GO:0009521 photosystem 2.67% (4/150) 5.85 1e-06 1.2e-05
GO:0033013 tetrapyrrole metabolic process 2.67% (4/150) 5.76 1e-06 1.3e-05
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.33% (5/150) 4.85 1e-06 1.3e-05
GO:0004812 aminoacyl-tRNA ligase activity 3.33% (5/150) 4.85 1e-06 1.3e-05
GO:0044249 cellular biosynthetic process 8.67% (13/150) 2.37 2e-06 2e-05
GO:1901576 organic substance biosynthetic process 8.67% (13/150) 2.29 3e-06 3.7e-05
GO:0140098 catalytic activity, acting on RNA 4.67% (7/150) 3.49 4e-06 4e-05
GO:0005840 ribosome 4.67% (7/150) 3.46 4e-06 4.3e-05
GO:0006412 translation 4.67% (7/150) 3.44 5e-06 4.5e-05
GO:0006779 porphyrin-containing compound biosynthetic process 2.0% (3/150) 6.47 5e-06 4.5e-05
GO:0004853 uroporphyrinogen decarboxylase activity 1.33% (2/150) 8.89 4e-06 4.5e-05
GO:0003735 structural constituent of ribosome 4.67% (7/150) 3.42 5e-06 4.6e-05
GO:0043043 peptide biosynthetic process 4.67% (7/150) 3.41 5e-06 4.6e-05
GO:0006518 peptide metabolic process 4.67% (7/150) 3.32 8e-06 5.8e-05
GO:0009987 cellular process 18.0% (27/150) 1.34 7e-06 5.8e-05
GO:0043604 amide biosynthetic process 4.67% (7/150) 3.33 7e-06 5.8e-05
GO:0043228 non-membrane-bounded organelle 4.67% (7/150) 3.33 7e-06 5.9e-05
GO:0043232 intracellular non-membrane-bounded organelle 4.67% (7/150) 3.34 7e-06 5.9e-05
GO:0032991 protein-containing complex 7.33% (11/150) 2.42 8e-06 6.1e-05
GO:0005198 structural molecule activity 4.67% (7/150) 3.28 9e-06 6.5e-05
GO:0009058 biosynthetic process 8.67% (13/150) 2.14 9e-06 6.6e-05
GO:1990904 ribonucleoprotein complex 4.67% (7/150) 3.26 1e-05 6.9e-05
GO:0043603 cellular amide metabolic process 4.67% (7/150) 3.23 1.2e-05 7.8e-05
GO:0006778 porphyrin-containing compound metabolic process 2.0% (3/150) 5.95 1.6e-05 0.000103
GO:0006520 cellular amino acid metabolic process 4.0% (6/150) 3.4 2.6e-05 0.000163
GO:0044424 intracellular part 8.0% (12/150) 2.05 3.9e-05 0.000241
GO:0046483 heterocycle metabolic process 6.67% (10/150) 2.26 5.2e-05 0.000318
GO:0008152 metabolic process 21.33% (32/150) 1.05 5.5e-05 0.000327
GO:0016874 ligase activity 3.33% (5/150) 3.61 6.1e-05 0.000358
GO:0019752 carboxylic acid metabolic process 4.67% (7/150) 2.83 6.6e-05 0.000375
GO:0043436 oxoacid metabolic process 4.67% (7/150) 2.81 7e-05 0.000385
GO:0006725 cellular aromatic compound metabolic process 6.67% (10/150) 2.21 6.9e-05 0.000386
GO:0006082 organic acid metabolic process 4.67% (7/150) 2.81 7.2e-05 0.000387
GO:1901564 organonitrogen compound metabolic process 12.0% (18/150) 1.47 9.6e-05 0.000506
GO:0044464 cell part 8.0% (12/150) 1.9 0.000102 0.000514
GO:1901360 organic cyclic compound metabolic process 6.67% (10/150) 2.15 0.000101 0.000522
GO:0044281 small molecule metabolic process 5.33% (8/150) 2.41 0.000146 0.000726
GO:0034645 cellular macromolecule biosynthetic process 4.67% (7/150) 2.57 0.000201 0.00098
GO:1902494 catalytic complex 2.67% (4/150) 3.76 0.000233 0.001114
GO:0044444 cytoplasmic part 4.67% (7/150) 2.49 0.000281 0.001322
GO:0016070 RNA metabolic process 4.0% (6/150) 2.74 0.000304 0.001404
GO:0003674 molecular_function 38.0% (57/150) 0.6 0.000318 0.001445
GO:0009059 macromolecule biosynthetic process 4.67% (7/150) 2.44 0.000343 0.001532
GO:0051186 cofactor metabolic process 2.67% (4/150) 3.34 0.000708 0.00311
GO:0043229 intracellular organelle 4.67% (7/150) 2.26 0.000726 0.00314
GO:0043226 organelle 4.67% (7/150) 2.25 0.000745 0.003168
GO:0006807 nitrogen compound metabolic process 12.0% (18/150) 1.2 0.000868 0.003635
GO:0098796 membrane protein complex 2.67% (4/150) 3.18 0.001067 0.004399
GO:0071704 organic substance metabolic process 14.0% (21/150) 0.99 0.001947 0.007905
GO:0052880 oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor 0.67% (1/150) 8.89 0.002108 0.008071
GO:0008883 glutamyl-tRNA reductase activity 0.67% (1/150) 8.89 0.002108 0.008071
GO:0051321 meiotic cell cycle 0.67% (1/150) 8.89 0.002108 0.008071
GO:0009496 plastoquinol--plastocyanin reductase activity 0.67% (1/150) 8.89 0.002108 0.008071
GO:0090304 nucleic acid metabolic process 4.0% (6/150) 2.14 0.002619 0.009887
GO:0051188 cofactor biosynthetic process 2.0% (3/150) 3.4 0.003004 0.011181
GO:0008150 biological_process 24.67% (37/150) 0.65 0.003117 0.011442
GO:0007049 cell cycle 0.67% (1/150) 7.89 0.004212 0.014658
GO:0034357 photosynthetic membrane 0.67% (1/150) 7.89 0.004212 0.014658
GO:0042651 thylakoid membrane 0.67% (1/150) 7.89 0.004212 0.014658
GO:0005509 calcium ion binding 2.0% (3/150) 3.23 0.004188 0.015167
GO:0003824 catalytic activity 20.67% (31/150) 0.66 0.006431 0.022095
GO:0004512 inositol-3-phosphate synthase activity 0.67% (1/150) 6.89 0.008405 0.027811
GO:0006021 inositol biosynthetic process 0.67% (1/150) 6.89 0.008405 0.027811
GO:0002161 aminoacyl-tRNA editing activity 0.67% (1/150) 6.89 0.008405 0.027811
GO:0044255 cellular lipid metabolic process 2.0% (3/150) 2.79 0.009651 0.031544
GO:0018130 heterocycle biosynthetic process 2.67% (4/150) 2.28 0.009788 0.031603
GO:0051536 iron-sulfur cluster binding 1.33% (2/150) 3.68 0.010795 0.032145
GO:0051540 metal cluster binding 1.33% (2/150) 3.68 0.010795 0.032145
GO:0043170 macromolecule metabolic process 9.33% (14/150) 1.01 0.010103 0.032233
GO:0004109 coproporphyrinogen oxidase activity 0.67% (1/150) 6.57 0.010496 0.032332
GO:0005315 inorganic phosphate transmembrane transporter activity 0.67% (1/150) 6.57 0.010496 0.032332
GO:0006817 phosphate ion transport 0.67% (1/150) 6.57 0.010496 0.032332
GO:0006139 nucleobase-containing compound metabolic process 4.0% (6/150) 1.7 0.011062 0.03258
GO:0019438 aromatic compound biosynthetic process 2.67% (4/150) 2.24 0.010747 0.032729
GO:0016831 carboxy-lyase activity 1.33% (2/150) 3.59 0.01223 0.035626
GO:0048037 cofactor binding 5.33% (8/150) 1.38 0.012479 0.035962
GO:0046165 alcohol biosynthetic process 0.67% (1/150) 6.08 0.014663 0.040514
GO:0046173 polyol biosynthetic process 0.67% (1/150) 6.08 0.014663 0.040514
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 0.67% (1/150) 6.08 0.014663 0.040514
GO:0006020 inositol metabolic process 0.67% (1/150) 6.08 0.014663 0.040514
GO:1901617 organic hydroxy compound biosynthetic process 0.67% (1/150) 5.89 0.016741 0.045318
GO:0045300 acyl-[acyl-carrier-protein] desaturase activity 0.67% (1/150) 5.89 0.016741 0.045318
GO:0005575 cellular_component 9.33% (14/150) 0.91 0.017715 0.047477
GO:1901362 organic cyclic compound biosynthetic process 2.67% (4/150) 2.01 0.017901 0.0475
GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors 0.67% (1/150) 5.72 0.018814 0.049432
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_3 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_30 0.041 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.044 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_87 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_131 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_134 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_140 0.052 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_164 0.027 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_192 0.032 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_206 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_208 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_214 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_238 0.028 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_265 0.03 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_71 0.023 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_85 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_149 0.02 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_4 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_8 0.029 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_9 0.044 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_16 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_84 0.041 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_86 0.032 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.047 Gene family Compare
Oryza sativa HCCA cluster Cluster_21 0.023 Gene family Compare
Oryza sativa HCCA cluster Cluster_153 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_170 0.064 Gene family Compare
Oryza sativa HCCA cluster Cluster_223 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_226 0.03 Gene family Compare
Oryza sativa HCCA cluster Cluster_288 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_299 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_302 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_427 0.021 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_11 0.03 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_25 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_43 0.04 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_203 0.033 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_48 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.047 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_141 0.022 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_149 0.053 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_206 0.031 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_234 0.059 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_245 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_307 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_2 0.051 Gene family Compare
Vitis vinifera HCCA cluster Cluster_76 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_95 0.027 Gene family Compare
Vitis vinifera HCCA cluster Cluster_104 0.025 Gene family Compare
Vitis vinifera HCCA cluster Cluster_120 0.084 Gene family Compare
Vitis vinifera HCCA cluster Cluster_148 0.021 Gene family Compare
Vitis vinifera HCCA cluster Cluster_211 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_53 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_69 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_75 0.06 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_143 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_163 0.025 Gene family Compare
Zea mays HCCA cluster Cluster_176 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_233 0.026 Gene family Compare
Zea mays HCCA cluster Cluster_246 0.031 Gene family Compare
Zea mays HCCA cluster Cluster_258 0.051 Gene family Compare
Zea mays HCCA cluster Cluster_262 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_297 0.028 Gene family Compare
Zea mays HCCA cluster Cluster_313 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_354 0.026 Gene family Compare
Sequences (150) (download table)

InterPro Domains

GO Terms

Family Terms