Coexpression cluster: Cluster_248 (HCCA cluster)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0090304 nucleic acid metabolic process 7.66% (16/209) 3.07 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 7.66% (16/209) 2.63 0.0 1e-06
GO:0051716 cellular response to stimulus 3.35% (7/209) 4.29 0.0 2e-06
GO:0006974 cellular response to DNA damage stimulus 3.35% (7/209) 4.29 0.0 2e-06
GO:0033554 cellular response to stress 3.35% (7/209) 4.29 0.0 2e-06
GO:0006281 DNA repair 3.35% (7/209) 4.4 0.0 3e-06
GO:0006725 cellular aromatic compound metabolic process 7.66% (16/209) 2.41 0.0 4e-06
GO:1901360 organic cyclic compound metabolic process 7.66% (16/209) 2.35 0.0 4e-06
GO:0046483 heterocycle metabolic process 7.66% (16/209) 2.46 0.0 4e-06
GO:0097747 RNA polymerase activity 2.87% (6/209) 4.54 0.0 5e-06
GO:0034062 5'-3' RNA polymerase activity 2.87% (6/209) 4.54 0.0 5e-06
GO:0006259 DNA metabolic process 3.83% (8/209) 3.61 0.0 7e-06
GO:0030983 mismatched DNA binding 1.91% (4/209) 6.02 0.0 7e-06
GO:0006298 mismatch repair 1.91% (4/209) 5.95 1e-06 8e-06
GO:0034641 cellular nitrogen compound metabolic process 8.13% (17/209) 2.11 1e-06 9e-06
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.39% (5/209) 4.52 3e-06 4e-05
GO:0140098 catalytic activity, acting on RNA 3.83% (8/209) 3.2 3e-06 4.2e-05
GO:0097659 nucleic acid-templated transcription 2.39% (5/209) 4.1 1.2e-05 0.000142
GO:0006351 transcription, DNA-templated 2.39% (5/209) 4.1 1.2e-05 0.000142
GO:0016779 nucleotidyltransferase activity 2.87% (6/209) 3.54 1.5e-05 0.00017
GO:0016070 RNA metabolic process 3.83% (8/209) 2.68 4.2e-05 0.000455
GO:0003676 nucleic acid binding 8.61% (18/209) 1.56 4.9e-05 0.000504
GO:0032774 RNA biosynthetic process 2.39% (5/209) 3.49 9e-05 0.000889
GO:0008270 zinc ion binding 4.31% (9/209) 2.11 0.000286 0.002709
GO:0003677 DNA binding 5.26% (11/209) 1.78 0.000438 0.003973
GO:0006950 response to stress 3.35% (7/209) 2.32 0.000562 0.00491
GO:0044260 cellular macromolecule metabolic process 8.61% (18/209) 1.26 0.000616 0.005178
GO:0003690 double-stranded DNA binding 1.91% (4/209) 3.37 0.000651 0.00528
GO:0043170 macromolecule metabolic process 10.05% (21/209) 1.12 0.000766 0.005992
GO:0005488 binding 22.49% (47/209) 0.64 0.00111 0.008401
GO:0044237 cellular metabolic process 11.0% (23/209) 1.0 0.001226 0.00898
GO:0006807 nitrogen compound metabolic process 10.53% (22/209) 1.01 0.001464 0.01007
GO:0034645 cellular macromolecule biosynthetic process 3.35% (7/209) 2.09 0.001438 0.010201
GO:0034654 nucleobase-containing compound biosynthetic process 2.39% (5/209) 2.51 0.001969 0.013147
GO:0009059 macromolecule biosynthetic process 3.35% (7/209) 1.96 0.002366 0.015345
GO:0006425 glutaminyl-tRNA aminoacylation 0.48% (1/209) 8.41 0.002937 0.016668
GO:0036297 interstrand cross-link repair 0.48% (1/209) 8.41 0.002937 0.016668
GO:0043240 Fanconi anaemia nuclear complex 0.48% (1/209) 8.41 0.002937 0.016668
GO:0004819 glutamine-tRNA ligase activity 0.48% (1/209) 8.41 0.002937 0.016668
GO:0050896 response to stimulus 3.35% (7/209) 1.91 0.002925 0.018444
GO:0051082 unfolded protein binding 0.96% (2/209) 4.5 0.003538 0.019587
GO:0043167 ion binding 12.44% (26/209) 0.81 0.003682 0.019901
GO:0097159 organic cyclic compound binding 13.88% (29/209) 0.75 0.004178 0.021556
GO:1901363 heterocyclic compound binding 13.88% (29/209) 0.75 0.004178 0.021556
GO:0032977 membrane insertase activity 0.48% (1/209) 7.41 0.005866 0.029589
GO:0018130 heterocycle biosynthetic process 2.39% (5/209) 2.12 0.006275 0.030964
GO:0044238 primary metabolic process 11.48% (24/209) 0.78 0.006714 0.032425
GO:0019438 aromatic compound biosynthetic process 2.39% (5/209) 2.08 0.007028 0.033238
GO:0009987 cellular process 11.96% (25/209) 0.75 0.007378 0.03418
GO:0006457 protein folding 0.96% (2/209) 3.89 0.008162 0.037056
GO:0005664 nuclear origin of replication recognition complex 0.48% (1/209) 6.83 0.008786 0.039105
GO:0008144 drug binding 6.22% (13/209) 1.07 0.010164 0.044368
GO:0000808 origin recognition complex 0.48% (1/209) 6.41 0.011697 0.049171
GO:0019773 proteasome core complex, alpha-subunit complex 0.48% (1/209) 6.41 0.011697 0.049171
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_14 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_21 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_28 0.03 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_61 0.028 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_101 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_143 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_240 0.022 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_10 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_65 0.023 Gene family Compare
Oryza sativa HCCA cluster Cluster_67 0.03 Gene family Compare
Oryza sativa HCCA cluster Cluster_174 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_284 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_311 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_201 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_269 0.036 Gene family Compare
Picea abies HCCA cluster Cluster_380 0.026 Gene family Compare
Picea abies HCCA cluster Cluster_461 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_36 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_66 0.02 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_102 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_104 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_138 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_115 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_121 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_155 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_217 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_275 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_39 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_72 0.022 Gene family Compare
Vitis vinifera HCCA cluster Cluster_85 0.025 Gene family Compare
Vitis vinifera HCCA cluster Cluster_135 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_172 0.025 Gene family Compare
Vitis vinifera HCCA cluster Cluster_206 0.023 Gene family Compare
Vitis vinifera HCCA cluster Cluster_224 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_37 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_70 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_110 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_120 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_148 0.028 Gene family Compare
Zea mays HCCA cluster Cluster_185 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_186 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_286 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_326 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_331 0.021 Gene family Compare
Sequences (209) (download table)

InterPro Domains

GO Terms

Family Terms