Coexpression cluster: Cluster_71 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009507 chloroplast 65.05% (134/206) 2.24 0.0 0.0
GO:0009536 plastid 66.5% (137/206) 2.25 0.0 0.0
GO:0009658 chloroplast organization 18.45% (38/206) 4.43 0.0 0.0
GO:0006399 tRNA metabolic process 14.56% (30/206) 5.19 0.0 0.0
GO:0009657 plastid organization 18.93% (39/206) 4.09 0.0 0.0
GO:0044444 cytoplasmic part 77.18% (159/206) 1.11 0.0 0.0
GO:0016070 RNA metabolic process 30.58% (63/206) 2.6 0.0 0.0
GO:0034660 ncRNA metabolic process 17.48% (36/206) 3.78 0.0 0.0
GO:0044435 plastid part 28.16% (58/206) 2.63 0.0 0.0
GO:0090304 nucleic acid metabolic process 33.01% (68/206) 2.18 0.0 0.0
GO:0045036 protein targeting to chloroplast 9.71% (20/206) 5.23 0.0 0.0
GO:0072596 establishment of protein localization to chloroplast 9.71% (20/206) 5.23 0.0 0.0
GO:0072598 protein localization to chloroplast 9.71% (20/206) 5.23 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 36.89% (76/206) 1.94 0.0 0.0
GO:0046483 heterocycle metabolic process 38.35% (79/206) 1.8 0.0 0.0
GO:0044434 chloroplast part 24.76% (51/206) 2.48 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 39.81% (82/206) 1.71 0.0 0.0
GO:0006396 RNA processing 20.39% (42/206) 2.84 0.0 0.0
GO:0034470 ncRNA processing 13.59% (28/206) 3.8 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 38.83% (80/206) 1.73 0.0 0.0
GO:0016072 rRNA metabolic process 12.62% (26/206) 3.87 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 39.81% (82/206) 1.64 0.0 0.0
GO:0006364 rRNA processing 12.14% (25/206) 3.83 0.0 0.0
GO:0043170 macromolecule metabolic process 44.17% (91/206) 1.36 0.0 0.0
GO:0009295 nucleoid 6.8% (14/206) 5.28 0.0 0.0
GO:0006807 nitrogen compound metabolic process 46.6% (96/206) 1.25 0.0 0.0
GO:0044237 cellular metabolic process 54.37% (112/206) 1.07 0.0 0.0
GO:0006996 organelle organization 21.84% (45/206) 2.22 0.0 0.0
GO:0009790 embryo development 14.56% (30/206) 2.92 0.0 0.0
GO:0009793 embryo development ending in seed dormancy 14.56% (30/206) 2.92 0.0 0.0
GO:0044238 primary metabolic process 50.49% (104/206) 1.09 0.0 0.0
GO:0008152 metabolic process 56.31% (116/206) 0.95 0.0 0.0
GO:0071704 organic substance metabolic process 53.4% (110/206) 0.99 0.0 0.0
GO:0009532 plastid stroma 14.08% (29/206) 2.71 0.0 0.0
GO:0009570 chloroplast stroma 14.08% (29/206) 2.71 0.0 0.0
GO:0042793 plastid transcription 6.31% (13/206) 4.58 0.0 0.0
GO:0016043 cellular component organization 28.16% (58/206) 1.47 0.0 0.0
GO:0043229 intracellular organelle 84.95% (175/206) 0.45 0.0 0.0
GO:0043226 organelle 84.95% (175/206) 0.45 0.0 0.0
GO:0071840 cellular component organization or biogenesis 29.13% (60/206) 1.41 0.0 0.0
GO:0044446 intracellular organelle part 29.61% (61/206) 1.39 0.0 0.0
GO:0044422 organelle part 29.61% (61/206) 1.38 0.0 0.0
GO:0007275 multicellular organism development 14.56% (30/206) 2.19 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 83.5% (172/206) 0.44 0.0 0.0
GO:0043227 membrane-bounded organelle 83.5% (172/206) 0.44 0.0 0.0
GO:0009987 cellular process 58.74% (121/206) 0.73 0.0 0.0
GO:0016226 iron-sulfur cluster assembly 5.83% (12/206) 4.01 0.0 0.0
GO:0031163 metallo-sulfur cluster assembly 5.83% (12/206) 4.01 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 7.77% (16/206) 3.17 0.0 0.0
GO:0044424 intracellular part 90.29% (186/206) 0.33 0.0 0.0
GO:0061024 membrane organization 7.28% (15/206) 3.24 0.0 0.0
GO:0006351 transcription, DNA-templated 6.8% (14/206) 3.39 0.0 0.0
GO:0097659 nucleic acid-templated transcription 6.8% (14/206) 3.39 0.0 0.0
GO:0031425 chloroplast RNA processing 2.91% (6/206) 5.94 0.0 0.0
GO:0009668 plastid membrane organization 6.8% (14/206) 3.23 0.0 0.0
GO:0010027 thylakoid membrane organization 6.8% (14/206) 3.23 0.0 0.0
GO:0072594 establishment of protein localization to organelle 9.71% (20/206) 2.51 0.0 0.0
GO:0033365 protein localization to organelle 9.71% (20/206) 2.5 0.0 0.0
GO:0005982 starch metabolic process 6.8% (14/206) 3.04 0.0 0.0
GO:0000229 cytoplasmic chromosome 2.91% (6/206) 5.47 0.0 0.0
GO:0009508 plastid chromosome 2.91% (6/206) 5.47 0.0 0.0
GO:0009941 chloroplast envelope 9.71% (20/206) 2.31 0.0 0.0
GO:0009526 plastid envelope 9.71% (20/206) 2.3 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 16.02% (33/206) 1.63 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 15.05% (31/206) 1.69 0.0 0.0
GO:0042646 plastid nucleoid 2.43% (5/206) 5.92 0.0 0.0
GO:0044249 cellular biosynthetic process 28.16% (58/206) 1.09 0.0 0.0
GO:0006605 protein targeting 11.17% (23/206) 2.04 0.0 0.0
GO:0016556 mRNA modification 4.85% (10/206) 3.53 0.0 0.0
GO:0019252 starch biosynthetic process 5.83% (12/206) 3.09 0.0 0.0
GO:0048856 anatomical structure development 17.96% (37/206) 1.44 0.0 0.0
GO:0051649 establishment of localization in cell 13.59% (28/206) 1.73 0.0 0.0
GO:0031967 organelle envelope 9.71% (20/206) 2.14 0.0 0.0
GO:0031975 envelope 9.71% (20/206) 2.14 0.0 0.0
GO:0015031 protein transport 12.14% (25/206) 1.82 0.0 1e-06
GO:0045184 establishment of protein localization 12.14% (25/206) 1.82 0.0 1e-06
GO:0018130 heterocycle biosynthetic process 13.59% (28/206) 1.68 0.0 1e-06
GO:0008104 protein localization 12.14% (25/206) 1.8 0.0 1e-06
GO:0000272 polysaccharide catabolic process 3.4% (7/206) 4.28 0.0 1e-06
GO:0032774 RNA biosynthetic process 6.8% (14/206) 2.62 0.0 1e-06
GO:0034613 cellular protein localization 11.17% (23/206) 1.88 0.0 1e-06
GO:0006886 intracellular protein transport 11.65% (24/206) 1.82 0.0 1e-06
GO:0140101 catalytic activity, acting on a tRNA 3.88% (8/206) 3.81 0.0 1e-06
GO:1901576 organic substance biosynthetic process 28.64% (59/206) 0.98 0.0 1e-06
GO:0005983 starch catabolic process 2.43% (5/206) 5.29 0.0 2e-06
GO:0009251 glucan catabolic process 2.43% (5/206) 5.29 0.0 2e-06
GO:0044247 cellular polysaccharide catabolic process 2.43% (5/206) 5.29 0.0 2e-06
GO:0051186 cofactor metabolic process 11.65% (24/206) 1.78 0.0 2e-06
GO:0009059 macromolecule biosynthetic process 15.05% (31/206) 1.5 0.0 2e-06
GO:0003006 developmental process involved in reproduction 17.48% (36/206) 1.36 0.0 2e-06
GO:0034654 nucleobase-containing compound biosynthetic process 10.68% (22/206) 1.88 0.0 2e-06
GO:0051641 cellular localization 13.59% (28/206) 1.6 0.0 2e-06
GO:0070727 cellular macromolecule localization 11.17% (23/206) 1.81 0.0 2e-06
GO:0009451 RNA modification 6.8% (14/206) 2.52 0.0 2e-06
GO:0033036 macromolecule localization 12.14% (25/206) 1.71 0.0 2e-06
GO:0048481 plant ovule development 4.85% (10/206) 3.14 0.0 3e-06
GO:0044271 cellular nitrogen compound biosynthetic process 14.56% (30/206) 1.5 0.0 3e-06
GO:1901362 organic cyclic compound biosynthetic process 16.02% (33/206) 1.41 0.0 3e-06
GO:0016462 pyrophosphatase activity 9.22% (19/206) 2.01 0.0 3e-06
GO:0009058 biosynthetic process 28.64% (59/206) 0.94 0.0 3e-06
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 9.22% (19/206) 2.01 0.0 3e-06
GO:0016817 hydrolase activity, acting on acid anhydrides 9.22% (19/206) 2.0 0.0 4e-06
GO:0015833 peptide transport 12.14% (25/206) 1.66 0.0 4e-06
GO:0044464 cell part 91.75% (189/206) 0.22 0.0 5e-06
GO:0042886 amide transport 12.14% (25/206) 1.65 0.0 5e-06
GO:0017111 nucleoside-triphosphatase activity 8.74% (18/206) 2.0 1e-06 7e-06
GO:0005694 chromosome 2.91% (6/206) 4.21 1e-06 8e-06
GO:0000373 Group II intron splicing 1.94% (4/206) 5.6 1e-06 1e-05
GO:0046907 intracellular transport 11.65% (24/206) 1.63 1e-06 1e-05
GO:0006073 cellular glucan metabolic process 6.8% (14/206) 2.32 1e-06 1e-05
GO:0044042 glucan metabolic process 6.8% (14/206) 2.32 1e-06 1e-05
GO:0008150 biological_process 89.32% (184/206) 0.23 1e-06 1.1e-05
GO:0004386 helicase activity 4.37% (9/206) 3.11 1e-06 1.1e-05
GO:0044275 cellular carbohydrate catabolic process 2.43% (5/206) 4.68 1e-06 1.2e-05
GO:0004812 aminoacyl-tRNA ligase activity 2.91% (6/206) 4.08 1e-06 1.2e-05
GO:0006418 tRNA aminoacylation for protein translation 2.91% (6/206) 4.08 1e-06 1.2e-05
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.91% (6/206) 4.08 1e-06 1.2e-05
GO:0043038 amino acid activation 2.91% (6/206) 4.08 1e-06 1.2e-05
GO:0043039 tRNA aminoacylation 2.91% (6/206) 4.08 1e-06 1.2e-05
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 5.34% (11/206) 2.68 1e-06 1.3e-05
GO:0090407 organophosphate biosynthetic process 10.68% (22/206) 1.68 2e-06 1.4e-05
GO:0009240 isopentenyl diphosphate biosynthetic process 5.34% (11/206) 2.66 2e-06 1.4e-05
GO:0046490 isopentenyl diphosphate metabolic process 5.34% (11/206) 2.66 2e-06 1.4e-05
GO:1901259 chloroplast rRNA processing 1.46% (3/206) 6.64 2e-06 1.4e-05
GO:0009250 glucan biosynthetic process 5.83% (12/206) 2.5 2e-06 1.4e-05
GO:0016071 mRNA metabolic process 6.31% (13/206) 2.31 3e-06 2.3e-05
GO:0008026 ATP-dependent helicase activity 3.4% (7/206) 3.45 4e-06 3.1e-05
GO:0070035 purine NTP-dependent helicase activity 3.4% (7/206) 3.45 4e-06 3.1e-05
GO:0016874 ligase activity 4.37% (9/206) 2.86 5e-06 3.9e-05
GO:0006081 cellular aldehyde metabolic process 6.8% (14/206) 2.13 5e-06 3.9e-05
GO:0045037 protein import into chloroplast stroma 1.94% (4/206) 5.05 5e-06 4.3e-05
GO:0032501 multicellular organismal process 15.53% (32/206) 1.21 8e-06 6.2e-05
GO:0019682 glyceraldehyde-3-phosphate metabolic process 5.83% (12/206) 2.28 8e-06 6.6e-05
GO:0003723 RNA binding 7.28% (15/206) 1.95 9e-06 7.4e-05
GO:1901135 carbohydrate derivative metabolic process 11.17% (23/206) 1.47 1e-05 8e-05
GO:0022414 reproductive process 17.48% (36/206) 1.1 1.1e-05 8.3e-05
GO:0010020 chloroplast fission 1.94% (4/206) 4.81 1.1e-05 8.6e-05
GO:0043572 plastid fission 1.94% (4/206) 4.73 1.4e-05 0.000106
GO:0010628 positive regulation of gene expression 6.8% (14/206) 1.97 1.6e-05 0.000124
GO:0010557 positive regulation of macromolecule biosynthetic process 6.8% (14/206) 1.96 1.7e-05 0.000132
GO:0019637 organophosphate metabolic process 11.17% (23/206) 1.42 1.9e-05 0.000142
GO:0031328 positive regulation of cellular biosynthetic process 6.8% (14/206) 1.94 2e-05 0.000153
GO:0016887 ATPase activity 6.31% (13/206) 2.03 2.1e-05 0.000158
GO:0003824 catalytic activity 37.86% (78/206) 0.61 2.2e-05 0.000165
GO:0042372 phylloquinone biosynthetic process 1.46% (3/206) 5.64 2.3e-05 0.000165
GO:0042374 phylloquinone metabolic process 1.46% (3/206) 5.64 2.3e-05 0.000165
GO:0042644 chloroplast nucleoid 1.46% (3/206) 5.64 2.3e-05 0.000165
GO:0004556 alpha-amylase activity 1.46% (3/206) 5.64 2.3e-05 0.000165
GO:0044281 small molecule metabolic process 19.42% (40/206) 0.97 2.5e-05 0.000176
GO:0006783 heme biosynthetic process 1.94% (4/206) 4.53 2.5e-05 0.000177
GO:0051173 positive regulation of nitrogen compound metabolic process 6.8% (14/206) 1.91 2.5e-05 0.00018
GO:0010604 positive regulation of macromolecule metabolic process 6.8% (14/206) 1.89 3e-05 0.000209
GO:0031325 positive regulation of cellular metabolic process 6.8% (14/206) 1.87 3.5e-05 0.000241
GO:0008654 phospholipid biosynthetic process 5.83% (12/206) 2.05 3.8e-05 0.000267
GO:0045893 positive regulation of transcription, DNA-templated 6.31% (13/206) 1.93 4.2e-05 0.000282
GO:0051254 positive regulation of RNA metabolic process 6.31% (13/206) 1.93 4.2e-05 0.000282
GO:1902680 positive regulation of RNA biosynthetic process 6.31% (13/206) 1.93 4.2e-05 0.000282
GO:1903508 positive regulation of nucleic acid-templated transcription 6.31% (13/206) 1.93 4.2e-05 0.000282
GO:0042168 heme metabolic process 1.94% (4/206) 4.35 4.1e-05 0.000282
GO:0016787 hydrolase activity 16.99% (35/206) 1.03 4.3e-05 0.000284
GO:0005739 mitochondrion 22.82% (47/206) 0.84 4.7e-05 0.000312
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 6.31% (13/206) 1.89 5.6e-05 0.000369
GO:0006644 phospholipid metabolic process 5.83% (12/206) 1.97 6.7e-05 0.00044
GO:0032502 developmental process 22.33% (46/206) 0.82 8.1e-05 0.00053
GO:0008033 tRNA processing 1.94% (4/206) 4.1 8.3e-05 0.000541
GO:0010103 stomatal complex morphogenesis 3.4% (7/206) 2.73 9.5e-05 0.000608
GO:0090626 plant epidermis morphogenesis 3.4% (7/206) 2.73 9.5e-05 0.000608
GO:0044264 cellular polysaccharide metabolic process 6.8% (14/206) 1.73 9.9e-05 0.000631
GO:0072528 pyrimidine-containing compound biosynthetic process 3.4% (7/206) 2.71 0.000104 0.000657
GO:0006796 phosphate-containing compound metabolic process 14.08% (29/206) 1.08 0.000107 0.000673
GO:0006793 phosphorus metabolic process 14.08% (29/206) 1.06 0.000132 0.000822
GO:0042623 ATPase activity, coupled 4.85% (10/206) 2.09 0.000136 0.000846
GO:0009902 chloroplast relocation 2.91% (6/206) 2.94 0.000139 0.000852
GO:0051667 establishment of plastid localization 2.91% (6/206) 2.94 0.000139 0.000852
GO:0019750 chloroplast localization 2.91% (6/206) 2.93 0.000146 0.000888
GO:0051644 plastid localization 2.91% (6/206) 2.93 0.000146 0.000888
GO:0009891 positive regulation of biosynthetic process 6.8% (14/206) 1.66 0.000156 0.000942
GO:0051656 establishment of organelle localization 2.91% (6/206) 2.9 0.000162 0.000973
GO:1901661 quinone metabolic process 1.94% (4/206) 3.84 0.000169 0.000999
GO:1901663 quinone biosynthetic process 1.94% (4/206) 3.84 0.000169 0.000999
GO:0016781 phosphotransferase activity, paired acceptors 0.97% (2/206) 6.47 0.000168 0.001004
GO:0072527 pyrimidine-containing compound metabolic process 3.4% (7/206) 2.59 0.000179 0.001051
GO:0042181 ketone biosynthetic process 1.94% (4/206) 3.81 0.000188 0.001098
GO:0033692 cellular polysaccharide biosynthetic process 5.83% (12/206) 1.75 0.000264 0.001528
GO:0016160 amylase activity 1.46% (3/206) 4.55 0.000264 0.001534
GO:0009893 positive regulation of metabolic process 6.8% (14/206) 1.58 0.000286 0.001644
GO:0006790 sulfur compound metabolic process 7.28% (15/206) 1.5 0.000307 0.001753
GO:0031969 chloroplast membrane 2.43% (5/206) 3.09 0.00031 0.001765
GO:0006090 pyruvate metabolic process 5.34% (11/206) 1.82 0.000329 0.001862
GO:0042780 tRNA 3'-end processing 0.97% (2/206) 6.05 0.000335 0.001863
GO:0042781 3'-tRNA processing endoribonuclease activity 0.97% (2/206) 6.05 0.000335 0.001863
GO:0004645 phosphorylase activity 0.97% (2/206) 6.05 0.000335 0.001863
GO:0009706 chloroplast inner membrane 1.94% (4/206) 3.56 0.000364 0.002017
GO:0044262 cellular carbohydrate metabolic process 6.8% (14/206) 1.54 0.00038 0.002097
GO:0022607 cellular component assembly 7.28% (15/206) 1.46 0.000411 0.002254
GO:0071702 organic substance transport 12.14% (25/206) 1.05 0.000468 0.002542
GO:0005976 polysaccharide metabolic process 6.8% (14/206) 1.51 0.000471 0.002544
GO:0009528 plastid inner membrane 1.94% (4/206) 3.47 0.000467 0.002548
GO:0034637 cellular carbohydrate biosynthetic process 5.83% (12/206) 1.65 0.000501 0.00269
GO:0042170 plastid membrane 2.43% (5/206) 2.93 0.000514 0.002736
GO:0071705 nitrogen compound transport 12.14% (25/206) 1.04 0.000513 0.002741
GO:0042180 cellular ketone metabolic process 2.91% (6/206) 2.58 0.000523 0.002742
GO:0009218 pyrimidine ribonucleotide metabolic process 2.91% (6/206) 2.58 0.000523 0.002742
GO:0009220 pyrimidine ribonucleotide biosynthetic process 2.91% (6/206) 2.58 0.000523 0.002742
GO:0006220 pyrimidine nucleotide metabolic process 2.91% (6/206) 2.57 0.000544 0.002825
GO:0006221 pyrimidine nucleotide biosynthetic process 2.91% (6/206) 2.57 0.000544 0.002825
GO:0019843 rRNA binding 0.97% (2/206) 5.73 0.000555 0.002838
GO:0031897 Tic complex 0.97% (2/206) 5.73 0.000555 0.002838
GO:0004133 glycogen debranching enzyme activity 0.97% (2/206) 5.73 0.000555 0.002838
GO:1901363 heterocyclic compound binding 18.45% (38/206) 0.78 0.000594 0.003025
GO:0097159 organic cyclic compound binding 18.45% (38/206) 0.78 0.000672 0.003404
GO:0043228 non-membrane-bounded organelle 6.8% (14/206) 1.43 0.000771 0.003766
GO:0043232 intracellular non-membrane-bounded organelle 6.8% (14/206) 1.43 0.000771 0.003766
GO:0032555 purine ribonucleotide binding 6.31% (13/206) 1.5 0.000757 0.003783
GO:0017076 purine nucleotide binding 6.31% (13/206) 1.5 0.000769 0.003788
GO:0007623 circadian rhythm 2.91% (6/206) 2.48 0.000766 0.003791
GO:0048511 rhythmic process 2.91% (6/206) 2.48 0.000766 0.003791
GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters 1.46% (3/206) 4.05 0.000756 0.003793
GO:0007005 mitochondrion organization 1.46% (3/206) 4.05 0.000756 0.003793
GO:0044260 cellular macromolecule metabolic process 21.36% (44/206) 0.69 0.000818 0.003974
GO:0032553 ribonucleotide binding 6.31% (13/206) 1.49 0.000828 0.004007
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 1.46% (3/206) 4.0 0.000854 0.004113
GO:0004519 endonuclease activity 1.94% (4/206) 3.22 0.0009 0.004294
GO:0009110 vitamin biosynthetic process 1.94% (4/206) 3.22 0.0009 0.004294
GO:0097367 carbohydrate derivative binding 6.31% (13/206) 1.47 0.000959 0.004557
GO:0000023 maltose metabolic process 2.91% (6/206) 2.39 0.001052 0.004975
GO:0000271 polysaccharide biosynthetic process 5.83% (12/206) 1.51 0.001181 0.005564
GO:0000375 RNA splicing, via transesterification reactions 2.43% (5/206) 2.63 0.001311 0.006095
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.43% (5/206) 2.63 0.001311 0.006095
GO:0006655 phosphatidylglycerol biosynthetic process 1.94% (4/206) 3.08 0.00131 0.006142
GO:0046471 phosphatidylglycerol metabolic process 1.94% (4/206) 3.05 0.001389 0.006429
GO:0007020 microtubule nucleation 1.94% (4/206) 3.01 0.001558 0.007177
GO:0010497 plasmodesmata-mediated intercellular transport 0.97% (2/206) 4.88 0.001958 0.008947
GO:0043628 ncRNA 3'-end processing 0.97% (2/206) 4.88 0.001958 0.008947
GO:0035639 purine ribonucleoside triphosphate binding 5.83% (12/206) 1.42 0.001987 0.009037
GO:0048522 positive regulation of cellular process 6.8% (14/206) 1.28 0.002083 0.009435
GO:0004540 ribonuclease activity 1.94% (4/206) 2.86 0.002258 0.010185
GO:0051640 organelle localization 2.91% (6/206) 2.17 0.00228 0.01024
GO:0030554 adenyl nucleotide binding 4.85% (10/206) 1.55 0.002389 0.010642
GO:0032559 adenyl ribonucleotide binding 4.85% (10/206) 1.55 0.002389 0.010642
GO:0003676 nucleic acid binding 13.59% (28/206) 0.8 0.002788 0.012369
GO:0010496 intercellular transport 0.97% (2/206) 4.6 0.002962 0.013086
GO:0019866 organelle inner membrane 2.43% (5/206) 2.35 0.003074 0.013523
GO:0051234 establishment of localization 16.99% (35/206) 0.68 0.003309 0.014497
GO:0005984 disaccharide metabolic process 2.91% (6/206) 2.05 0.003498 0.015262
GO:0004521 endoribonuclease activity 1.46% (3/206) 3.28 0.003624 0.015623
GO:0006779 porphyrin-containing compound biosynthetic process 2.43% (5/206) 2.3 0.003613 0.015637
GO:1901566 organonitrogen compound biosynthetic process 10.68% (22/206) 0.9 0.003602 0.015651
GO:0004518 nuclease activity 2.43% (5/206) 2.29 0.003729 0.016007
GO:0019220 regulation of phosphate metabolic process 2.91% (6/206) 2.02 0.003866 0.016465
GO:0051174 regulation of phosphorus metabolic process 2.91% (6/206) 2.02 0.003866 0.016465
GO:0033014 tetrapyrrole biosynthetic process 2.43% (5/206) 2.26 0.004091 0.017353
GO:0006265 DNA topological change 0.97% (2/206) 4.35 0.00416 0.017577
GO:0035304 regulation of protein dephosphorylation 2.43% (5/206) 2.25 0.004217 0.017747
GO:0035303 regulation of dephosphorylation 2.43% (5/206) 2.24 0.004346 0.018218
GO:0003924 GTPase activity 1.46% (3/206) 3.18 0.004429 0.018496
GO:0005575 cellular_component 96.12% (198/206) 0.08 0.004705 0.019569
GO:0003916 DNA topoisomerase activity 0.97% (2/206) 4.25 0.004829 0.02001
GO:0008380 RNA splicing 3.4% (7/206) 1.76 0.004862 0.020066
GO:0006520 cellular amino acid metabolic process 5.83% (12/206) 1.26 0.004887 0.020093
GO:0009311 oligosaccharide metabolic process 2.91% (6/206) 1.93 0.005263 0.021556
GO:0043436 oxoacid metabolic process 12.14% (25/206) 0.79 0.00549 0.0224
GO:0006082 organic acid metabolic process 12.14% (25/206) 0.79 0.005526 0.02246
GO:0048285 organelle fission 1.94% (4/206) 2.5 0.0056 0.022589
GO:0019752 carboxylic acid metabolic process 11.65% (24/206) 0.8 0.005587 0.022625
GO:0016741 transferase activity, transferring one-carbon groups 2.43% (5/206) 2.13 0.005954 0.023928
GO:0008173 RNA methyltransferase activity 0.97% (2/206) 4.05 0.006306 0.025246
GO:0043168 anion binding 6.31% (13/206) 1.15 0.006389 0.025484
GO:0005524 ATP binding 4.37% (9/206) 1.44 0.006432 0.025562
GO:0006766 vitamin metabolic process 1.94% (4/206) 2.44 0.006481 0.025661
GO:0050521 alpha-glucan, water dikinase activity 0.49% (1/206) 7.05 0.007523 0.027355
GO:0008756 o-succinylbenzoate-CoA ligase activity 0.49% (1/206) 7.05 0.007523 0.027355
GO:0051266 sirohydrochlorin ferrochelatase activity 0.49% (1/206) 7.05 0.007523 0.027355
GO:0046428 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity 0.49% (1/206) 7.05 0.007523 0.027355
GO:0010494 cytoplasmic stress granule 0.49% (1/206) 7.05 0.007523 0.027355
GO:0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity 0.49% (1/206) 7.05 0.007523 0.027355
GO:0042407 cristae formation 0.49% (1/206) 7.05 0.007523 0.027355
GO:0002103 endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 0.49% (1/206) 7.05 0.007523 0.027355
GO:0000470 maturation of LSU-rRNA 0.49% (1/206) 7.05 0.007523 0.027355
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 0.49% (1/206) 7.05 0.007523 0.027355
GO:0000489 maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 0.49% (1/206) 7.05 0.007523 0.027355
GO:0000372 Group I intron splicing 0.49% (1/206) 7.05 0.007523 0.027355
GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile 0.49% (1/206) 7.05 0.007523 0.027355
GO:0010323 negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 0.49% (1/206) 7.05 0.007523 0.027355
GO:0010677 negative regulation of cellular carbohydrate metabolic process 0.49% (1/206) 7.05 0.007523 0.027355
GO:0071072 negative regulation of phospholipid biosynthetic process 0.49% (1/206) 7.05 0.007523 0.027355
GO:1903726 negative regulation of phospholipid metabolic process 0.49% (1/206) 7.05 0.007523 0.027355
GO:0015035 protein disulfide oxidoreductase activity 0.49% (1/206) 7.05 0.007523 0.027355
GO:0047134 protein-disulfide reductase activity 0.49% (1/206) 7.05 0.007523 0.027355
GO:0010006 Toc complex 0.49% (1/206) 7.05 0.007523 0.027355
GO:0042794 plastid rRNA transcription 0.49% (1/206) 7.05 0.007523 0.027355
GO:0009569 chloroplast starch grain 0.49% (1/206) 7.05 0.007523 0.027355
GO:0070180 large ribosomal subunit rRNA binding 0.49% (1/206) 7.05 0.007523 0.027355
GO:0051752 phosphoglucan, water dikinase activity 0.49% (1/206) 7.05 0.007523 0.027355
GO:0008610 lipid biosynthetic process 7.28% (15/206) 1.02 0.007774 0.02817
GO:0090698 post-embryonic plant morphogenesis 3.4% (7/206) 1.63 0.007853 0.028267
GO:0008237 metallopeptidase activity 1.46% (3/206) 2.88 0.007852 0.028359
GO:0009073 aromatic amino acid family biosynthetic process 1.94% (4/206) 2.35 0.007969 0.028394
GO:0009982 pseudouridine synthase activity 0.97% (2/206) 3.88 0.007961 0.028462
GO:0031123 RNA 3'-end processing 0.97% (2/206) 3.88 0.007961 0.028462
GO:0099402 plant organ development 5.34% (11/206) 1.23 0.008016 0.028468
GO:0008187 poly-pyrimidine tract binding 0.97% (2/206) 3.81 0.008854 0.031236
GO:0008266 poly(U) RNA binding 0.97% (2/206) 3.81 0.008854 0.031236
GO:1901293 nucleoside phosphate biosynthetic process 4.37% (9/206) 1.35 0.009296 0.032688
GO:0051179 localization 16.99% (35/206) 0.58 0.009548 0.033465
GO:0046148 pigment biosynthetic process 2.91% (6/206) 1.73 0.01004 0.035074
GO:0003724 RNA helicase activity 0.97% (2/206) 3.66 0.010766 0.037489
GO:0000166 nucleotide binding 6.31% (13/206) 1.04 0.011745 0.040632
GO:1901265 nucleoside phosphate binding 6.31% (13/206) 1.04 0.011745 0.040632
GO:0006753 nucleoside phosphate metabolic process 5.83% (12/206) 1.08 0.012013 0.041427
GO:0065002 intracellular protein transmembrane transport 1.94% (4/206) 2.17 0.012267 0.042029
GO:0071806 protein transmembrane transport 1.94% (4/206) 2.17 0.012267 0.042029
GO:0016052 carbohydrate catabolic process 3.4% (7/206) 1.47 0.013789 0.047092
GO:0043621 protein self-association 0.97% (2/206) 3.47 0.013943 0.047467
GO:0009663 plasmodesma organization 0.49% (1/206) 6.05 0.01499 0.047834
GO:0052624 2-phytyl-1,4-naphthoquinone methyltransferase activity 0.49% (1/206) 6.05 0.01499 0.047834
GO:0019354 siroheme biosynthetic process 0.49% (1/206) 6.05 0.01499 0.047834
GO:0046156 siroheme metabolic process 0.49% (1/206) 6.05 0.01499 0.047834
GO:0006264 mitochondrial DNA replication 0.49% (1/206) 6.05 0.01499 0.047834
GO:0033258 plastid DNA metabolic process 0.49% (1/206) 6.05 0.01499 0.047834
GO:0033259 plastid DNA replication 0.49% (1/206) 6.05 0.01499 0.047834
GO:0051117 ATPase binding 0.49% (1/206) 6.05 0.01499 0.047834
GO:0010266 response to vitamin B1 0.49% (1/206) 6.05 0.01499 0.047834
GO:0003844 1,4-alpha-glucan branching enzyme activity 0.49% (1/206) 6.05 0.01499 0.047834
GO:0004654 polyribonucleotide nucleotidyltransferase activity 0.49% (1/206) 6.05 0.01499 0.047834
GO:0004821 histidine-tRNA ligase activity 0.49% (1/206) 6.05 0.01499 0.047834
GO:0006427 histidyl-tRNA aminoacylation 0.49% (1/206) 6.05 0.01499 0.047834
GO:0004820 glycine-tRNA ligase activity 0.49% (1/206) 6.05 0.01499 0.047834
GO:0006426 glycyl-tRNA aminoacylation 0.49% (1/206) 6.05 0.01499 0.047834
GO:0004825 methionine-tRNA ligase activity 0.49% (1/206) 6.05 0.01499 0.047834
GO:0006154 adenosine catabolic process 0.49% (1/206) 6.05 0.01499 0.047834
GO:0043036 starch grain 0.49% (1/206) 6.05 0.01499 0.047834
GO:0004818 glutamate-tRNA ligase activity 0.49% (1/206) 6.05 0.01499 0.047834
GO:0000025 maltose catabolic process 0.49% (1/206) 6.05 0.01499 0.047834
GO:0004134 4-alpha-glucanotransferase activity 0.49% (1/206) 6.05 0.01499 0.047834
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_28 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_132 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_189 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_192 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_202 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_214 0.029 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_38 0.014 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_71 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_100 0.019 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_135 0.021 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_6 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_10 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_37 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_66 0.027 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_84 0.031 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_98 0.018 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_114 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_128 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.146 Gene family Compare
Oryza sativa HCCA cluster Cluster_45 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_67 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_126 0.027 Gene family Compare
Oryza sativa HCCA cluster Cluster_170 0.05 Gene family Compare
Oryza sativa HCCA cluster Cluster_174 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_178 0.032 Gene family Compare
Oryza sativa HCCA cluster Cluster_182 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_226 0.06 Gene family Compare
Oryza sativa HCCA cluster Cluster_288 0.021 Gene family Compare
Oryza sativa HCCA cluster Cluster_311 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_335 0.025 Gene family Compare
Picea abies HCCA cluster Cluster_36 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_175 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_186 0.044 Gene family Compare
Picea abies HCCA cluster Cluster_205 0.059 Gene family Compare
Picea abies HCCA cluster Cluster_235 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_267 0.028 Gene family Compare
Picea abies HCCA cluster Cluster_275 0.046 Gene family Compare
Picea abies HCCA cluster Cluster_345 0.05 Gene family Compare
Picea abies HCCA cluster Cluster_367 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_453 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_478 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_488 0.025 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_11 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_43 0.102 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_64 0.029 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_101 0.019 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_114 0.019 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_150 0.021 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_165 0.029 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_166 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_176 0.021 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_193 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_203 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_207 0.029 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_15 0.027 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_17 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_48 0.021 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_55 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_85 0.094 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.039 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_141 0.052 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_149 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_155 0.027 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_183 0.057 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_199 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_206 0.035 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_234 0.092 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_245 0.091 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_261 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_302 0.02 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_307 0.023 Gene family Compare
Vitis vinifera HCCA cluster Cluster_2 0.06 Gene family Compare
Vitis vinifera HCCA cluster Cluster_19 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_39 0.024 Gene family Compare
Vitis vinifera HCCA cluster Cluster_50 0.023 Gene family Compare
Vitis vinifera HCCA cluster Cluster_58 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_104 0.056 Gene family Compare
Vitis vinifera HCCA cluster Cluster_120 0.044 Gene family Compare
Vitis vinifera HCCA cluster Cluster_145 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_148 0.15 Gene family Compare
Vitis vinifera HCCA cluster Cluster_159 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_180 0.024 Gene family Compare
Vitis vinifera HCCA cluster Cluster_182 0.02 Gene family Compare
Vitis vinifera HCCA cluster Cluster_208 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_211 0.046 Gene family Compare
Vitis vinifera HCCA cluster Cluster_231 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_35 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_45 0.028 Gene family Compare
Zea mays HCCA cluster Cluster_53 0.109 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.067 Gene family Compare
Zea mays HCCA cluster Cluster_132 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_143 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_148 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_163 0.043 Gene family Compare
Zea mays HCCA cluster Cluster_209 0.075 Gene family Compare
Zea mays HCCA cluster Cluster_215 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_233 0.067 Gene family Compare
Zea mays HCCA cluster Cluster_258 0.034 Gene family Compare
Zea mays HCCA cluster Cluster_262 0.03 Gene family Compare
Zea mays HCCA cluster Cluster_297 0.034 Gene family Compare
Zea mays HCCA cluster Cluster_341 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_354 0.028 Gene family Compare
Sequences (206) (download table)

InterPro Domains

GO Terms

Family Terms