Coexpression cluster: Cluster_64 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 22.39% (15/67) 3.99 0.0 0.0
GO:0034470 ncRNA processing 13.43% (9/67) 5.54 0.0 0.0
GO:0034660 ncRNA metabolic process 14.93% (10/67) 4.96 0.0 0.0
GO:0090304 nucleic acid metabolic process 22.39% (15/67) 3.58 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 23.88% (16/67) 3.38 0.0 0.0
GO:0046483 heterocycle metabolic process 23.88% (16/67) 3.23 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 23.88% (16/67) 3.23 0.0 0.0
GO:0006396 RNA processing 14.93% (10/67) 4.55 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 23.88% (16/67) 3.18 0.0 0.0
GO:0016072 rRNA metabolic process 8.96% (6/67) 6.18 0.0 0.0
GO:0006364 rRNA processing 8.96% (6/67) 6.18 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 23.88% (16/67) 2.83 0.0 0.0
GO:0003676 nucleic acid binding 20.9% (14/67) 2.47 0.0 2e-06
GO:0005634 nucleus 8.96% (6/67) 4.21 1e-06 1e-05
GO:1990904 ribonucleoprotein complex 5.97% (4/67) 5.48 2e-06 2e-05
GO:0030684 preribosome 4.48% (3/67) 6.76 2e-06 2.2e-05
GO:0043231 intracellular membrane-bounded organelle 8.96% (6/67) 3.85 4e-06 3.4e-05
GO:0043227 membrane-bounded organelle 8.96% (6/67) 3.85 4e-06 3.4e-05
GO:0042254 ribosome biogenesis 4.48% (3/67) 6.18 8e-06 7.2e-05
GO:0022613 ribonucleoprotein complex biogenesis 4.48% (3/67) 6.06 1.1e-05 8.9e-05
GO:0005488 binding 40.3% (27/67) 1.14 2.3e-05 0.000166
GO:0006807 nitrogen compound metabolic process 23.88% (16/67) 1.69 2.2e-05 0.000171
GO:0043170 macromolecule metabolic process 22.39% (15/67) 1.74 2.9e-05 0.000204
GO:0140098 catalytic activity, acting on RNA 7.46% (5/67) 3.54 7.2e-05 0.000464
GO:0044237 cellular metabolic process 23.88% (16/67) 1.56 6.9e-05 0.000466
GO:0006399 tRNA metabolic process 5.97% (4/67) 4.11 8.4e-05 0.000525
GO:0008033 tRNA processing 4.48% (3/67) 4.86 0.000149 0.000894
GO:0032040 small-subunit processome 2.99% (2/67) 6.59 0.000174 0.001008
GO:0044085 cellular component biogenesis 4.48% (3/67) 4.76 0.000181 0.001012
GO:0044238 primary metabolic process 23.88% (16/67) 1.39 0.00026 0.001406
GO:0009451 RNA modification 4.48% (3/67) 4.55 0.00028 0.001465
GO:1901363 heterocyclic compound binding 25.37% (17/67) 1.3 0.000332 0.001629
GO:0097159 organic cyclic compound binding 25.37% (17/67) 1.3 0.000332 0.001629
GO:0071704 organic substance metabolic process 23.88% (16/67) 1.3 0.000551 0.002626
GO:0043226 organelle 8.96% (6/67) 2.52 0.000627 0.002822
GO:0043229 intracellular organelle 8.96% (6/67) 2.52 0.000616 0.002853
GO:0005622 intracellular anatomical structure 8.96% (6/67) 2.5 0.00066 0.00289
GO:0009987 cellular process 26.87% (18/67) 1.14 0.000871 0.003713
GO:0140101 catalytic activity, acting on a tRNA 4.48% (3/67) 3.91 0.001057 0.004392
GO:0008152 metabolic process 23.88% (16/67) 1.16 0.001534 0.006213
GO:0001522 pseudouridine synthesis 2.99% (2/67) 4.86 0.00214 0.008456
GO:0003674 molecular_function 49.25% (33/67) 0.62 0.002481 0.009571
GO:0035639 purine ribonucleoside triphosphate binding 13.43% (9/67) 1.6 0.002743 0.010334
GO:0004637 phosphoribosylamine-glycine ligase activity 1.49% (1/67) 8.18 0.00345 0.011406
GO:0009113 purine nucleobase biosynthetic process 1.49% (1/67) 8.18 0.00345 0.011406
GO:0006144 purine nucleobase metabolic process 1.49% (1/67) 8.18 0.00345 0.011406
GO:0004526 ribonuclease P activity 1.49% (1/67) 8.18 0.00345 0.011406
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 1.49% (1/67) 8.18 0.00345 0.011406
GO:0034457 Mpp10 complex 1.49% (1/67) 8.18 0.00345 0.011406
GO:0032555 purine ribonucleotide binding 13.43% (9/67) 1.53 0.003706 0.012006
GO:0017076 purine nucleotide binding 13.43% (9/67) 1.52 0.003815 0.012118
GO:0032553 ribonucleotide binding 13.43% (9/67) 1.52 0.003955 0.012322
GO:0003723 RNA binding 5.97% (4/67) 2.6 0.004288 0.013107
GO:0097367 carbohydrate derivative binding 13.43% (9/67) 1.49 0.004462 0.013387
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.99% (2/67) 4.23 0.005111 0.015054
GO:0031515 tRNA (m1A) methyltransferase complex 1.49% (1/67) 7.18 0.006888 0.015941
GO:0030688 preribosome, small subunit precursor 1.49% (1/67) 7.18 0.006888 0.015941
GO:0030488 tRNA methylation 1.49% (1/67) 7.18 0.006888 0.015941
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 1.49% (1/67) 7.18 0.006888 0.015941
GO:0034708 methyltransferase complex 1.49% (1/67) 7.18 0.006888 0.015941
GO:0043527 tRNA methyltransferase complex 1.49% (1/67) 7.18 0.006888 0.015941
GO:0030490 maturation of SSU-rRNA 1.49% (1/67) 7.18 0.006888 0.015941
GO:0004549 tRNA-specific ribonuclease activity 1.49% (1/67) 7.18 0.006888 0.015941
GO:0030515 snoRNA binding 1.49% (1/67) 7.18 0.006888 0.015941
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.49% (1/67) 7.18 0.006888 0.015941
GO:0046112 nucleobase biosynthetic process 1.49% (1/67) 7.18 0.006888 0.015941
GO:0009112 nucleobase metabolic process 1.49% (1/67) 7.18 0.006888 0.015941
GO:0043168 anion binding 13.43% (9/67) 1.37 0.007573 0.016805
GO:1901265 nucleoside phosphate binding 13.43% (9/67) 1.37 0.007526 0.016932
GO:0000166 nucleotide binding 13.43% (9/67) 1.37 0.007526 0.016932
GO:0034062 5'-3' RNA polymerase activity 2.99% (2/67) 4.05 0.006482 0.018423
GO:0097747 RNA polymerase activity 2.99% (2/67) 4.05 0.006482 0.018423
GO:0032991 protein-containing complex 7.46% (5/67) 2.07 0.006831 0.01908
GO:0005515 protein binding 14.93% (10/67) 1.23 0.009273 0.020299
GO:0036094 small molecule binding 13.43% (9/67) 1.31 0.009996 0.021591
GO:0016423 tRNA (guanine) methyltransferase activity 1.49% (1/67) 6.18 0.013729 0.028515
GO:0046148 pigment biosynthetic process 1.49% (1/67) 6.18 0.013729 0.028515
GO:0005524 ATP binding 10.45% (7/67) 1.45 0.013696 0.029194
GO:0019438 aromatic compound biosynthetic process 4.48% (3/67) 2.51 0.015903 0.032611
GO:0018130 heterocycle biosynthetic process 4.48% (3/67) 2.46 0.017313 0.03339
GO:0008175 tRNA methyltransferase activity 1.49% (1/67) 5.86 0.017132 0.033439
GO:0001510 RNA methylation 1.49% (1/67) 5.86 0.017132 0.033439
GO:0032559 adenyl ribonucleotide binding 10.45% (7/67) 1.38 0.017797 0.033919
GO:0030554 adenyl nucleotide binding 10.45% (7/67) 1.37 0.018023 0.03395
GO:0006351 transcription, DNA-templated 2.99% (2/67) 3.32 0.017116 0.034232
GO:0097659 nucleic acid-templated transcription 2.99% (2/67) 3.32 0.017116 0.034232
GO:0008168 methyltransferase activity 4.48% (3/67) 2.39 0.019711 0.036704
GO:1901362 organic cyclic compound biosynthetic process 4.48% (3/67) 2.34 0.021625 0.039809
GO:0016741 transferase activity, transferring one-carbon groups 4.48% (3/67) 2.32 0.022284 0.040563
GO:0071840 cellular component organization or biogenesis 4.48% (3/67) 2.3 0.022955 0.041319
GO:0016779 nucleotidyltransferase activity 2.99% (2/67) 3.03 0.025006 0.044515
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_104 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_172 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_180 0.053 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_205 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_231 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_241 0.038 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_253 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_254 0.044 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_7 0.1 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_141 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.13 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_191 0.026 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_199 0.042 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_226 0.027 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_10 0.061 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_36 0.233 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_111 0.029 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_125 0.052 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_49 0.088 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_73 0.039 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_80 0.035 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_145 0.025 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_171 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_75 0.036 Archaeplastida Compare
Gingko biloba HCCA Cluster_118 0.032 Archaeplastida Compare
Gingko biloba HCCA Cluster_143 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_167 0.074 Archaeplastida Compare
Gingko biloba HCCA Cluster_251 0.033 Archaeplastida Compare
Gingko biloba HCCA Cluster_267 0.024 Archaeplastida Compare
Gingko biloba HCCA Cluster_301 0.033 Archaeplastida Compare
Gingko biloba HCCA Cluster_351 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_10 0.027 Archaeplastida Compare
Oryza sativa HCCA Cluster_134 0.069 Archaeplastida Compare
Oryza sativa HCCA Cluster_210 0.119 Archaeplastida Compare
Oryza sativa HCCA Cluster_255 0.028 Archaeplastida Compare
Oryza sativa HCCA Cluster_262 0.043 Archaeplastida Compare
Oryza sativa HCCA Cluster_312 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_379 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_1 0.04 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_113 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_129 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_203 0.154 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_212 0.027 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_229 0.062 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.056 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_300 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_212 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_237 0.079 Archaeplastida Compare
Picea abies HCCA Cluster_276 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_333 0.036 Archaeplastida Compare
Picea abies HCCA Cluster_411 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_464 0.039 Archaeplastida Compare
Picea abies HCCA Cluster_477 0.033 Archaeplastida Compare
Picea abies HCCA Cluster_484 0.031 Archaeplastida Compare
Picea abies HCCA Cluster_505 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_506 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_510 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_516 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_37 0.078 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_73 0.032 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_85 0.031 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_119 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_145 0.024 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_168 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_9 0.031 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_29 0.083 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.155 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_197 0.053 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_255 0.033 Archaeplastida Compare
Vitis vinifera HCCA Cluster_3 0.138 Archaeplastida Compare
Vitis vinifera HCCA Cluster_88 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_145 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_159 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_161 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_194 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_237 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_13 0.082 Archaeplastida Compare
Zea mays HCCA Cluster_102 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_140 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_162 0.048 Archaeplastida Compare
Zea mays HCCA Cluster_213 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_238 0.062 Archaeplastida Compare
Zea mays HCCA Cluster_318 0.071 Archaeplastida Compare
Zea mays HCCA Cluster_355 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_94 0.017 LandPlants Compare
Amborella trichopoda HCCA Cluster_104 0.015 LandPlants Compare
Amborella trichopoda HCCA Cluster_106 0.016 LandPlants Compare
Amborella trichopoda HCCA Cluster_172 0.018 LandPlants Compare
Amborella trichopoda HCCA Cluster_180 0.053 LandPlants Compare
Amborella trichopoda HCCA Cluster_189 0.016 LandPlants Compare
Amborella trichopoda HCCA Cluster_205 0.018 LandPlants Compare
Amborella trichopoda HCCA Cluster_231 0.02 LandPlants Compare
Amborella trichopoda HCCA Cluster_240 0.016 LandPlants Compare
Amborella trichopoda HCCA Cluster_241 0.03 LandPlants Compare
Amborella trichopoda HCCA Cluster_253 0.02 LandPlants Compare
Amborella trichopoda HCCA Cluster_254 0.034 LandPlants Compare
Amborella trichopoda HCCA Cluster_258 0.017 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_7 0.098 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_75 0.015 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_102 0.016 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_141 0.022 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_152 0.119 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_160 0.014 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_191 0.025 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_199 0.042 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_209 0.017 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_226 0.018 LandPlants Compare
Gingko biloba HCCA Cluster_75 0.035 LandPlants Compare
Gingko biloba HCCA Cluster_118 0.023 LandPlants Compare
Gingko biloba HCCA Cluster_143 0.018 LandPlants Compare
Gingko biloba HCCA Cluster_167 0.068 LandPlants Compare
Gingko biloba HCCA Cluster_251 0.024 LandPlants Compare
Gingko biloba HCCA Cluster_267 0.016 LandPlants Compare
Gingko biloba HCCA Cluster_301 0.032 LandPlants Compare
Gingko biloba HCCA Cluster_348 0.016 LandPlants Compare
Gingko biloba HCCA Cluster_351 0.025 LandPlants Compare
Oryza sativa HCCA Cluster_134 0.068 LandPlants Compare
Oryza sativa HCCA Cluster_172 0.015 LandPlants Compare
Oryza sativa HCCA Cluster_176 0.018 LandPlants Compare
Oryza sativa HCCA Cluster_210 0.116 LandPlants Compare
Oryza sativa HCCA Cluster_255 0.027 LandPlants Compare
Oryza sativa HCCA Cluster_262 0.037 LandPlants Compare
Oryza sativa HCCA Cluster_312 0.016 LandPlants Compare
Oryza sativa HCCA Cluster_376 0.018 LandPlants Compare
Physcomitrella patens HCCA Cluster_1 0.039 LandPlants Compare
Physcomitrella patens HCCA Cluster_47 0.015 LandPlants Compare
Physcomitrella patens HCCA Cluster_113 0.022 LandPlants Compare
Physcomitrella patens HCCA Cluster_129 0.024 LandPlants Compare
Physcomitrella patens HCCA Cluster_172 0.015 LandPlants Compare
Physcomitrella patens HCCA Cluster_203 0.141 LandPlants Compare
Physcomitrella patens HCCA Cluster_212 0.026 LandPlants Compare
Physcomitrella patens HCCA Cluster_229 0.062 LandPlants Compare
Physcomitrella patens HCCA Cluster_275 0.061 LandPlants Compare
Physcomitrella patens HCCA Cluster_300 0.025 LandPlants Compare
Picea abies HCCA Cluster_237 0.07 LandPlants Compare
Picea abies HCCA Cluster_276 0.02 LandPlants Compare
Picea abies HCCA Cluster_333 0.026 LandPlants Compare
Picea abies HCCA Cluster_376 0.015 LandPlants Compare
Picea abies HCCA Cluster_453 0.016 LandPlants Compare
Picea abies HCCA Cluster_464 0.037 LandPlants Compare
Picea abies HCCA Cluster_477 0.024 LandPlants Compare
Picea abies HCCA Cluster_478 0.016 LandPlants Compare
Picea abies HCCA Cluster_484 0.03 LandPlants Compare
Picea abies HCCA Cluster_505 0.022 LandPlants Compare
Picea abies HCCA Cluster_506 0.015 LandPlants Compare
Picea abies HCCA Cluster_510 0.021 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_37 0.078 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_73 0.031 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_85 0.031 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_119 0.023 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_145 0.018 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_168 0.025 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_202 0.016 LandPlants Compare
Solanum lycopersicum HCCA Cluster_9 0.025 LandPlants Compare
Solanum lycopersicum HCCA Cluster_29 0.082 LandPlants Compare
Solanum lycopersicum HCCA Cluster_119 0.124 LandPlants Compare
Solanum lycopersicum HCCA Cluster_197 0.052 LandPlants Compare
Solanum lycopersicum HCCA Cluster_199 0.016 LandPlants Compare
Solanum lycopersicum HCCA Cluster_255 0.032 LandPlants Compare
Solanum lycopersicum HCCA Cluster_282 0.015 LandPlants Compare
Vitis vinifera HCCA Cluster_3 0.119 LandPlants Compare
Vitis vinifera HCCA Cluster_88 0.022 LandPlants Compare
Vitis vinifera HCCA Cluster_101 0.017 LandPlants Compare
Vitis vinifera HCCA Cluster_145 0.019 LandPlants Compare
Vitis vinifera HCCA Cluster_159 0.018 LandPlants Compare
Vitis vinifera HCCA Cluster_161 0.025 LandPlants Compare
Vitis vinifera HCCA Cluster_194 0.019 LandPlants Compare
Vitis vinifera HCCA Cluster_237 0.022 LandPlants Compare
Zea mays HCCA Cluster_13 0.08 LandPlants Compare
Zea mays HCCA Cluster_102 0.02 LandPlants Compare
Zea mays HCCA Cluster_140 0.022 LandPlants Compare
Zea mays HCCA Cluster_162 0.047 LandPlants Compare
Zea mays HCCA Cluster_213 0.019 LandPlants Compare
Zea mays HCCA Cluster_238 0.043 LandPlants Compare
Zea mays HCCA Cluster_318 0.064 LandPlants Compare
Zea mays HCCA Cluster_355 0.021 LandPlants Compare
Sequences (67) (download table)

InterPro Domains

GO Terms

Family Terms