Coexpression cluster: Cluster_81 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006725 cellular aromatic compound metabolic process 16.36% (9/55) 2.69 9e-06 0.000181
GO:0046483 heterocycle metabolic process 16.36% (9/55) 2.69 9e-06 0.000181
GO:0003677 DNA binding 12.73% (7/55) 3.19 1.1e-05 0.000197
GO:0090304 nucleic acid metabolic process 14.55% (8/55) 2.96 8e-06 0.000197
GO:1901360 organic cyclic compound metabolic process 16.36% (9/55) 2.64 1.2e-05 0.000198
GO:0003690 double-stranded DNA binding 7.27% (4/55) 5.66 1e-06 0.000222
GO:0016180 snRNA processing 3.64% (2/55) 8.46 8e-06 0.000223
GO:0034472 snRNA 3'-end processing 3.64% (2/55) 8.46 8e-06 0.000223
GO:0034477 U6 snRNA 3'-end processing 3.64% (2/55) 8.46 8e-06 0.000223
GO:0043628 ncRNA 3'-end processing 3.64% (2/55) 8.46 8e-06 0.000223
GO:0016073 snRNA metabolic process 3.64% (2/55) 8.46 8e-06 0.000223
GO:0006139 nucleobase-containing compound metabolic process 14.55% (8/55) 2.67 3.4e-05 0.000515
GO:0003676 nucleic acid binding 20.0% (11/55) 2.41 5e-06 0.000534
GO:0005488 binding 41.82% (23/55) 1.19 4.5e-05 0.000634
GO:0097159 organic cyclic compound binding 29.09% (16/55) 1.5 8.7e-05 0.001015
GO:1901363 heterocyclic compound binding 29.09% (16/55) 1.5 8.7e-05 0.001015
GO:0034641 cellular nitrogen compound metabolic process 16.36% (9/55) 2.28 8.4e-05 0.001106
GO:0031123 RNA 3'-end processing 3.64% (2/55) 6.88 0.000117 0.00129
GO:0043168 anion binding 18.18% (10/55) 1.81 0.000474 0.004472
GO:0004674 protein serine/threonine kinase activity 3.64% (2/55) 5.88 0.00051 0.004593
GO:1901265 nucleoside phosphate binding 18.18% (10/55) 1.81 0.000471 0.004659
GO:0000166 nucleotide binding 18.18% (10/55) 1.81 0.000471 0.004659
GO:0006281 DNA repair 5.45% (3/55) 4.17 0.000624 0.004946
GO:0030983 mismatched DNA binding 3.64% (2/55) 5.76 0.000602 0.004967
GO:0006298 mismatch repair 3.64% (2/55) 5.76 0.000602 0.004967
GO:0036094 small molecule binding 18.18% (10/55) 1.74 0.000672 0.005116
GO:0033554 cellular response to stress 5.45% (3/55) 4.05 0.000792 0.00541
GO:0051716 cellular response to stimulus 5.45% (3/55) 4.05 0.000792 0.00541
GO:0006974 cellular response to DNA damage stimulus 5.45% (3/55) 4.05 0.000792 0.00541
GO:0005524 ATP binding 14.55% (8/55) 1.93 0.001077 0.006878
GO:0016070 RNA metabolic process 9.09% (5/55) 2.69 0.001054 0.006956
GO:0030554 adenyl nucleotide binding 14.55% (8/55) 1.85 0.001531 0.008914
GO:0043167 ion binding 21.82% (12/55) 1.4 0.001521 0.009128
GO:0032559 adenyl ribonucleotide binding 14.55% (8/55) 1.85 0.001506 0.009319
GO:0006259 DNA metabolic process 5.45% (3/55) 3.51 0.002329 0.013176
GO:0035639 purine ribonucleoside triphosphate binding 14.55% (8/55) 1.71 0.00281 0.015035
GO:0003674 molecular_function 50.91% (28/55) 0.67 0.002793 0.015363
GO:0043170 macromolecule metabolic process 18.18% (10/55) 1.44 0.003246 0.016914
GO:0032555 purine ribonucleotide binding 14.55% (8/55) 1.65 0.003705 0.018812
GO:0017076 purine nucleotide binding 14.55% (8/55) 1.64 0.003806 0.01884
GO:0032553 ribonucleotide binding 14.55% (8/55) 1.63 0.003935 0.019002
GO:0044237 cellular metabolic process 20.0% (11/55) 1.3 0.004156 0.019592
GO:0097367 carbohydrate derivative binding 14.55% (8/55) 1.6 0.004398 0.020251
GO:0034312 diol biosynthetic process 1.82% (1/55) 7.46 0.005656 0.02113
GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity 1.82% (1/55) 7.46 0.005656 0.02113
GO:0005666 RNA polymerase III complex 1.82% (1/55) 7.46 0.005656 0.02113
GO:0034311 diol metabolic process 1.82% (1/55) 7.46 0.005656 0.02113
GO:0006729 tetrahydrobiopterin biosynthetic process 1.82% (1/55) 7.46 0.005656 0.02113
GO:0003333 amino acid transmembrane transport 1.82% (1/55) 7.46 0.005656 0.02113
GO:0000428 DNA-directed RNA polymerase complex 1.82% (1/55) 7.46 0.005656 0.02113
GO:0006865 amino acid transport 1.82% (1/55) 7.46 0.005656 0.02113
GO:0046146 tetrahydrobiopterin metabolic process 1.82% (1/55) 7.46 0.005656 0.02113
GO:0055029 nuclear DNA-directed RNA polymerase complex 1.82% (1/55) 7.46 0.005656 0.02113
GO:0006807 nitrogen compound metabolic process 18.18% (10/55) 1.3 0.006446 0.023636
GO:0070403 NAD+ binding 1.82% (1/55) 6.88 0.008472 0.029956
GO:0006383 transcription by RNA polymerase III 1.82% (1/55) 6.88 0.008472 0.029956
GO:0019438 aromatic compound biosynthetic process 5.45% (3/55) 2.79 0.009324 0.03239
GO:0004518 nuclease activity 3.64% (2/55) 3.76 0.009537 0.032558
GO:0018130 heterocycle biosynthetic process 5.45% (3/55) 2.75 0.010174 0.034144
GO:0046173 polyol biosynthetic process 1.82% (1/55) 6.46 0.011281 0.0349
GO:0030880 RNA polymerase complex 1.82% (1/55) 6.46 0.011281 0.0349
GO:0046165 alcohol biosynthetic process 1.82% (1/55) 6.46 0.011281 0.0349
GO:0042559 pteridine-containing compound biosynthetic process 1.82% (1/55) 6.46 0.011281 0.0349
GO:0031326 regulation of cellular biosynthetic process 5.45% (3/55) 2.59 0.013597 0.034965
GO:2000112 regulation of cellular macromolecule biosynthetic process 5.45% (3/55) 2.59 0.013597 0.034965
GO:0009889 regulation of biosynthetic process 5.45% (3/55) 2.59 0.013597 0.034965
GO:0010556 regulation of macromolecule biosynthetic process 5.45% (3/55) 2.59 0.013597 0.034965
GO:1901362 organic cyclic compound biosynthetic process 5.45% (3/55) 2.62 0.012787 0.035164
GO:0051252 regulation of RNA metabolic process 5.45% (3/55) 2.62 0.012787 0.035164
GO:2001141 regulation of RNA biosynthetic process 5.45% (3/55) 2.62 0.012787 0.035164
GO:1903506 regulation of nucleic acid-templated transcription 5.45% (3/55) 2.62 0.012787 0.035164
GO:0006355 regulation of transcription, DNA-templated 5.45% (3/55) 2.62 0.012787 0.035164
GO:0019219 regulation of nucleobase-containing compound metabolic process 5.45% (3/55) 2.61 0.012987 0.035224
GO:0097659 nucleic acid-templated transcription 3.64% (2/55) 3.61 0.011761 0.035284
GO:0006351 transcription, DNA-templated 3.64% (2/55) 3.61 0.011761 0.035284
GO:1905039 carboxylic acid transmembrane transport 1.82% (1/55) 6.14 0.014081 0.035293
GO:1903825 organic acid transmembrane transport 1.82% (1/55) 6.14 0.014081 0.035293
GO:0008152 metabolic process 21.82% (12/55) 1.03 0.012008 0.035485
GO:0034470 ncRNA processing 3.64% (2/55) 3.66 0.010997 0.036289
GO:0051171 regulation of nitrogen compound metabolic process 5.45% (3/55) 2.52 0.015527 0.036598
GO:0080090 regulation of primary metabolic process 5.45% (3/55) 2.52 0.015527 0.036598
GO:0140513 nuclear protein-containing complex 3.64% (2/55) 3.4 0.015478 0.037375
GO:0031323 regulation of cellular metabolic process 5.45% (3/55) 2.49 0.016202 0.037742
GO:0071704 organic substance metabolic process 20.0% (11/55) 1.04 0.015444 0.037753
GO:0010468 regulation of gene expression 5.45% (3/55) 2.53 0.015305 0.03788
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.82% (1/55) 5.66 0.019659 0.042775
GO:0042558 pteridine-containing compound metabolic process 1.82% (1/55) 5.66 0.019659 0.042775
GO:0060255 regulation of macromolecule metabolic process 5.45% (3/55) 2.41 0.01882 0.042833
GO:0019222 regulation of metabolic process 5.45% (3/55) 2.41 0.019069 0.042906
GO:0044260 cellular macromolecule metabolic process 12.73% (7/55) 1.35 0.019347 0.043041
GO:0009058 biosynthetic process 9.09% (5/55) 1.7 0.018784 0.043247
GO:1901617 organic hydroxy compound biosynthetic process 1.82% (1/55) 5.46 0.022437 0.048287
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_94 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_121 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_172 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_179 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_200 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_205 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_220 0.024 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_228 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_231 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_254 0.029 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_267 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_10 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_192 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_198 0.03 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_209 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_243 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_37 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_182 0.03 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_201 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_23 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_129 0.034 Archaeplastida Compare
Gingko biloba HCCA Cluster_143 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_210 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_354 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_187 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_109 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_172 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_173 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_265 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_324 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_376 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_206 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_409 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_411 0.029 Archaeplastida Compare
Picea abies HCCA Cluster_431 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_455 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_507 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_539 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_37 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_162 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_199 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_235 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_261 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_270 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_87 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_113 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_159 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_208 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_28 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_51 0.038 Archaeplastida Compare
Zea mays HCCA Cluster_238 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_344 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_94 0.019 LandPlants Compare
Amborella trichopoda HCCA Cluster_121 0.02 LandPlants Compare
Amborella trichopoda HCCA Cluster_177 0.018 LandPlants Compare
Amborella trichopoda HCCA Cluster_200 0.019 LandPlants Compare
Amborella trichopoda HCCA Cluster_205 0.021 LandPlants Compare
Amborella trichopoda HCCA Cluster_220 0.024 LandPlants Compare
Amborella trichopoda HCCA Cluster_228 0.022 LandPlants Compare
Amborella trichopoda HCCA Cluster_230 0.017 LandPlants Compare
Amborella trichopoda HCCA Cluster_231 0.017 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_10 0.015 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_22 0.015 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_36 0.015 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_71 0.018 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_182 0.018 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_192 0.023 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_198 0.016 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_243 0.018 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_249 0.016 LandPlants Compare
Gingko biloba HCCA Cluster_11 0.015 LandPlants Compare
Gingko biloba HCCA Cluster_23 0.018 LandPlants Compare
Gingko biloba HCCA Cluster_129 0.033 LandPlants Compare
Gingko biloba HCCA Cluster_152 0.015 LandPlants Compare
Gingko biloba HCCA Cluster_216 0.018 LandPlants Compare
Gingko biloba HCCA Cluster_336 0.018 LandPlants Compare
Gingko biloba HCCA Cluster_341 0.016 LandPlants Compare
Oryza sativa HCCA Cluster_57 0.015 LandPlants Compare
Oryza sativa HCCA Cluster_97 0.016 LandPlants Compare
Oryza sativa HCCA Cluster_172 0.021 LandPlants Compare
Oryza sativa HCCA Cluster_265 0.018 LandPlants Compare
Oryza sativa HCCA Cluster_324 0.019 LandPlants Compare
Oryza sativa HCCA Cluster_357 0.015 LandPlants Compare
Picea abies HCCA Cluster_82 0.015 LandPlants Compare
Picea abies HCCA Cluster_206 0.021 LandPlants Compare
Picea abies HCCA Cluster_230 0.016 LandPlants Compare
Picea abies HCCA Cluster_374 0.017 LandPlants Compare
Picea abies HCCA Cluster_409 0.027 LandPlants Compare
Picea abies HCCA Cluster_411 0.022 LandPlants Compare
Picea abies HCCA Cluster_431 0.022 LandPlants Compare
Picea abies HCCA Cluster_507 0.02 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_157 0.016 LandPlants Compare
Solanum lycopersicum HCCA Cluster_33 0.015 LandPlants Compare
Solanum lycopersicum HCCA Cluster_199 0.017 LandPlants Compare
Solanum lycopersicum HCCA Cluster_203 0.018 LandPlants Compare
Solanum lycopersicum HCCA Cluster_224 0.016 LandPlants Compare
Solanum lycopersicum HCCA Cluster_235 0.019 LandPlants Compare
Solanum lycopersicum HCCA Cluster_248 0.015 LandPlants Compare
Vitis vinifera HCCA Cluster_87 0.029 LandPlants Compare
Vitis vinifera HCCA Cluster_159 0.02 LandPlants Compare
Vitis vinifera HCCA Cluster_176 0.015 LandPlants Compare
Vitis vinifera HCCA Cluster_205 0.016 LandPlants Compare
Vitis vinifera HCCA Cluster_208 0.019 LandPlants Compare
Vitis vinifera HCCA Cluster_226 0.018 LandPlants Compare
Zea mays HCCA Cluster_51 0.027 LandPlants Compare
Zea mays HCCA Cluster_238 0.019 LandPlants Compare
Zea mays HCCA Cluster_254 0.016 LandPlants Compare
Zea mays HCCA Cluster_339 0.016 LandPlants Compare
Zea mays HCCA Cluster_341 0.017 LandPlants Compare
Sequences (55) (download table)

InterPro Domains

GO Terms

Family Terms