Coexpression cluster: Cluster_478 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043038 amino acid activation 4.76% (3/63) 5.33 6e-05 0.002335
GO:0043039 tRNA aminoacylation 4.76% (3/63) 5.33 6e-05 0.002335
GO:0140101 catalytic activity, acting on a tRNA 4.76% (3/63) 4.98 0.000123 0.003835
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.76% (3/63) 5.37 5.6e-05 0.004346
GO:0004812 aminoacyl-tRNA ligase activity 4.76% (3/63) 5.37 5.6e-05 0.004346
GO:0006399 tRNA metabolic process 4.76% (3/63) 4.78 0.000186 0.004824
GO:0034660 ncRNA metabolic process 4.76% (3/63) 4.48 0.000345 0.007698
GO:0016874 ligase activity 4.76% (3/63) 4.13 0.000702 0.013697
GO:0015995 chlorophyll biosynthetic process 1.59% (1/63) 10.14 0.000885 0.013812
GO:0046406 magnesium protoporphyrin IX methyltransferase activity 1.59% (1/63) 10.14 0.000885 0.013812
GO:0006418 tRNA aminoacylation for protein translation 3.17% (2/63) 4.97 0.001895 0.014778
GO:0046483 heterocycle metabolic process 7.94% (5/63) 2.51 0.001855 0.015227
GO:0006520 cellular amino acid metabolic process 4.76% (3/63) 3.65 0.001813 0.015715
GO:0006725 cellular aromatic compound metabolic process 7.94% (5/63) 2.46 0.002147 0.01595
GO:0006729 tetrahydrobiopterin biosynthetic process 1.59% (1/63) 9.14 0.00177 0.016242
GO:0046422 violaxanthin de-epoxidase activity 1.59% (1/63) 9.14 0.00177 0.016242
GO:0034312 diol biosynthetic process 1.59% (1/63) 9.14 0.00177 0.016242
GO:0034311 diol metabolic process 1.59% (1/63) 9.14 0.00177 0.016242
GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity 1.59% (1/63) 9.14 0.00177 0.016242
GO:0010277 chlorophyllide a oxygenase [overall] activity 1.59% (1/63) 9.14 0.00177 0.016242
GO:0046146 tetrahydrobiopterin metabolic process 1.59% (1/63) 9.14 0.00177 0.016242
GO:0140098 catalytic activity, acting on RNA 4.76% (3/63) 3.52 0.002353 0.016684
GO:1901360 organic cyclic compound metabolic process 7.94% (5/63) 2.4 0.002626 0.017812
GO:0044281 small molecule metabolic process 6.35% (4/63) 2.67 0.003712 0.024128
GO:0042558 pteridine-containing compound metabolic process 1.59% (1/63) 7.14 0.007061 0.032399
GO:1901617 organic hydroxy compound biosynthetic process 1.59% (1/63) 7.14 0.007061 0.032399
GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) 1.59% (1/63) 7.14 0.007061 0.032399
GO:0042559 pteridine-containing compound biosynthetic process 1.59% (1/63) 7.56 0.005301 0.033076
GO:0051188 cofactor biosynthetic process 3.17% (2/63) 4.06 0.006469 0.033637
GO:0034641 cellular nitrogen compound metabolic process 7.94% (5/63) 2.08 0.006686 0.033647
GO:0009507 chloroplast 1.59% (1/63) 6.82 0.008819 0.034394
GO:0009536 plastid 1.59% (1/63) 6.82 0.008819 0.034394
GO:0046173 polyol biosynthetic process 1.59% (1/63) 7.33 0.006181 0.034439
GO:0015994 chlorophyll metabolic process 1.59% (1/63) 7.33 0.006181 0.034439
GO:0046165 alcohol biosynthetic process 1.59% (1/63) 7.33 0.006181 0.034439
GO:0016070 RNA metabolic process 4.76% (3/63) 3.0 0.006445 0.034667
GO:0046148 pigment biosynthetic process 1.59% (1/63) 6.68 0.009697 0.035178
GO:0010207 photosystem II assembly 1.59% (1/63) 6.68 0.009697 0.035178
GO:0000049 tRNA binding 1.59% (1/63) 6.68 0.009697 0.035178
GO:0019898 extrinsic component of membrane 1.59% (1/63) 6.97 0.00794 0.035392
GO:0006082 organic acid metabolic process 4.76% (3/63) 2.84 0.008678 0.035625
GO:0019752 carboxylic acid metabolic process 4.76% (3/63) 2.86 0.008335 0.036116
GO:0043436 oxoacid metabolic process 4.76% (3/63) 2.84 0.008579 0.036171
GO:0009654 photosystem II oxygen evolving complex 1.59% (1/63) 6.56 0.010573 0.037488
GO:0043933 protein-containing complex subunit organization 3.17% (2/63) 3.67 0.010878 0.037709
GO:0006415 translational termination 1.59% (1/63) 6.23 0.0132 0.039599
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 1.59% (1/63) 6.23 0.0132 0.039599
GO:0009523 photosystem II 1.59% (1/63) 6.23 0.0132 0.039599
GO:0022411 cellular component disassembly 1.59% (1/63) 6.23 0.0132 0.039599
GO:0043624 cellular protein complex disassembly 1.59% (1/63) 6.23 0.0132 0.039599
GO:0032984 protein-containing complex disassembly 1.59% (1/63) 6.23 0.0132 0.039599
GO:0051186 cofactor metabolic process 3.17% (2/63) 3.59 0.0122 0.041372
GO:0006779 porphyrin-containing compound biosynthetic process 1.59% (1/63) 6.14 0.014073 0.041424
GO:0042440 pigment metabolic process 1.59% (1/63) 5.97 0.015819 0.044868
GO:0019751 polyol metabolic process 1.59% (1/63) 5.97 0.015819 0.044868
GO:0006066 alcohol metabolic process 1.59% (1/63) 5.89 0.01669 0.045679
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 1.59% (1/63) 5.89 0.01669 0.045679
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_30 0.023 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_131 0.03 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_132 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_140 0.024 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_164 0.026 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_194 0.031 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_238 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_265 0.023 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_149 0.017 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_171 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_4 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_9 0.024 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_16 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_61 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_84 0.018 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_86 0.02 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_150 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.022 Gene family Compare
Oryza sativa HCCA cluster Cluster_153 0.023 Gene family Compare
Oryza sativa HCCA cluster Cluster_170 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_195 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_223 0.026 Gene family Compare
Oryza sativa HCCA cluster Cluster_226 0.023 Gene family Compare
Oryza sativa HCCA cluster Cluster_257 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_264 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_299 0.027 Gene family Compare
Picea abies HCCA cluster Cluster_65 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_333 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_393 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_450 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_885 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_11 0.026 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_33 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_151 0.023 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_155 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_203 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_17 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_85 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.026 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_123 0.029 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_149 0.032 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_214 0.038 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_239 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_245 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_264 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_280 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_2 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_55 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_95 0.055 Gene family Compare
Vitis vinifera HCCA cluster Cluster_120 0.029 Gene family Compare
Vitis vinifera HCCA cluster Cluster_180 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_184 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_211 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_32 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_69 0.023 Gene family Compare
Zea mays HCCA cluster Cluster_75 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_132 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_163 0.056 Gene family Compare
Zea mays HCCA cluster Cluster_176 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_233 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_246 0.028 Gene family Compare
Zea mays HCCA cluster Cluster_354 0.016 Gene family Compare
Sequences (63) (download table)

InterPro Domains

GO Terms

Family Terms