Coexpression cluster: Cluster_2 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140097 catalytic activity, acting on DNA 3.61% (7/194) 4.13 0.0 1.8e-05
GO:0003677 DNA binding 7.73% (15/194) 2.47 0.0 2.1e-05
GO:0003676 nucleic acid binding 12.89% (25/194) 1.77 0.0 3.6e-05
GO:0005488 binding 32.47% (63/194) 0.82 1e-06 0.000156
GO:0006302 double-strand break repair 1.55% (3/194) 5.65 1.9e-05 0.001617
GO:0003674 molecular_function 45.88% (89/194) 0.52 3.7e-05 0.002605
GO:0016043 cellular component organization 4.12% (8/194) 2.48 0.000101 0.006098
GO:0009247 glycolipid biosynthetic process 1.55% (3/194) 4.23 0.000499 0.010011
GO:1903509 liposaccharide metabolic process 1.55% (3/194) 4.23 0.000499 0.010011
GO:0046467 membrane lipid biosynthetic process 1.55% (3/194) 4.23 0.000499 0.010011
GO:0006664 glycolipid metabolic process 1.55% (3/194) 4.23 0.000499 0.010011
GO:0090304 nucleic acid metabolic process 6.19% (12/194) 1.72 0.000311 0.010902
GO:0006259 DNA metabolic process 3.09% (6/194) 2.69 0.000341 0.011041
GO:0006974 cellular response to DNA damage stimulus 2.58% (5/194) 2.97 0.000447 0.011063
GO:0051716 cellular response to stimulus 2.58% (5/194) 2.97 0.000447 0.011063
GO:0033554 cellular response to stress 2.58% (5/194) 2.97 0.000447 0.011063
GO:0006643 membrane lipid metabolic process 1.55% (3/194) 4.14 0.000602 0.011518
GO:0006281 DNA repair 2.58% (5/194) 3.08 0.000305 0.011687
GO:0044255 cellular lipid metabolic process 2.58% (5/194) 2.84 0.000676 0.011853
GO:0071840 cellular component organization or biogenesis 4.12% (8/194) 2.19 0.0004 0.012014
GO:0008270 zinc ion binding 3.61% (7/194) 2.26 0.000671 0.012286
GO:0006303 double-strand break repair via nonhomologous end joining 1.03% (2/194) 6.06 0.000296 0.012456
GO:0001671 ATPase activator activity 1.03% (2/194) 6.06 0.000296 0.012456
GO:0000726 non-recombinational repair 1.03% (2/194) 6.06 0.000296 0.012456
GO:1901137 carbohydrate derivative biosynthetic process 2.06% (4/194) 3.25 0.000803 0.013522
GO:0008094 DNA-dependent ATPase activity 1.03% (2/194) 5.32 0.000973 0.015176
GO:0060590 ATPase regulator activity 1.03% (2/194) 5.32 0.000973 0.015176
GO:0005515 protein binding 12.37% (24/194) 0.96 0.001313 0.019747
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 1.03% (2/194) 5.06 0.00145 0.020352
GO:0046483 heterocycle metabolic process 6.7% (13/194) 1.4 0.001414 0.02053
GO:0006325 chromatin organization 1.55% (3/194) 3.59 0.00192 0.023771
GO:0009987 cellular process 19.59% (38/194) 0.68 0.002106 0.023964
GO:0071704 organic substance metabolic process 16.49% (32/194) 0.76 0.002061 0.024108
GO:0006139 nucleobase-containing compound metabolic process 6.19% (12/194) 1.43 0.001781 0.024191
GO:1901360 organic cyclic compound metabolic process 6.7% (13/194) 1.35 0.001907 0.024334
GO:0016741 transferase activity, transferring one-carbon groups 3.61% (7/194) 2.01 0.001859 0.024462
GO:0044237 cellular metabolic process 14.43% (28/194) 0.83 0.002052 0.024685
GO:0008654 phospholipid biosynthetic process 1.55% (3/194) 3.48 0.002406 0.026655
GO:0008152 metabolic process 17.53% (34/194) 0.71 0.002597 0.028037
GO:0034061 DNA polymerase activity 1.03% (2/194) 4.65 0.002672 0.02812
GO:0003684 damaged DNA binding 1.03% (2/194) 4.48 0.003413 0.032652
GO:0051087 chaperone binding 1.03% (2/194) 4.48 0.003413 0.032652
GO:0006644 phospholipid metabolic process 1.55% (3/194) 3.32 0.003267 0.033546
GO:0009058 biosynthetic process 6.7% (13/194) 1.26 0.003375 0.033835
GO:0018995 host cellular component 1.55% (3/194) 3.19 0.004295 0.034773
GO:0033648 host intracellular membrane-bounded organelle 1.55% (3/194) 3.19 0.004295 0.034773
GO:0033647 host intracellular organelle 1.55% (3/194) 3.19 0.004295 0.034773
GO:0004386 helicase activity 1.55% (3/194) 3.19 0.004295 0.034773
GO:0033646 host intracellular part 1.55% (3/194) 3.19 0.004295 0.034773
GO:0033643 host cell part 1.55% (3/194) 3.19 0.004295 0.034773
GO:0042025 host cell nucleus 1.55% (3/194) 3.19 0.004295 0.034773
GO:0090407 organophosphate biosynthetic process 2.06% (4/194) 2.58 0.004531 0.035993
GO:0006505 GPI anchor metabolic process 1.03% (2/194) 4.19 0.005146 0.036105
GO:0006497 protein lipidation 1.03% (2/194) 4.19 0.005146 0.036105
GO:0006661 phosphatidylinositol biosynthetic process 1.03% (2/194) 4.19 0.005146 0.036105
GO:0006506 GPI anchor biosynthetic process 1.03% (2/194) 4.19 0.005146 0.036105
GO:1901363 heterocyclic compound binding 16.49% (32/194) 0.68 0.004803 0.036765
GO:0097159 organic cyclic compound binding 16.49% (32/194) 0.68 0.004803 0.036765
GO:0016779 nucleotidyltransferase activity 2.06% (4/194) 2.5 0.00557 0.03782
GO:0008610 lipid biosynthetic process 2.06% (4/194) 2.5 0.00557 0.03782
GO:0006725 cellular aromatic compound metabolic process 6.19% (12/194) 1.28 0.004089 0.038259
GO:0016740 transferase activity 10.82% (21/194) 0.88 0.005141 0.038652
GO:0006629 lipid metabolic process 3.09% (6/194) 1.72 0.010042 0.046973
GO:0050080 malonyl-CoA decarboxylase activity 0.52% (1/194) 6.65 0.009989 0.047252
GO:0009029 tetraacyldisaccharide 4'-kinase activity 0.52% (1/194) 6.65 0.009989 0.047252
GO:0000149 SNARE binding 0.52% (1/194) 6.65 0.009989 0.047252
GO:0033170 protein-DNA loading ATPase activity 0.52% (1/194) 6.65 0.009989 0.047252
GO:0008418 protein-N-terminal asparagine amidohydrolase activity 0.52% (1/194) 6.65 0.009989 0.047252
GO:0030677 ribonuclease P complex 0.52% (1/194) 6.65 0.009989 0.047252
GO:0019905 syntaxin binding 0.52% (1/194) 6.65 0.009989 0.047252
GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity 0.52% (1/194) 6.65 0.009989 0.047252
GO:0000702 oxidized base lesion DNA N-glycosylase activity 0.52% (1/194) 6.65 0.009989 0.047252
GO:0007029 endoplasmic reticulum organization 0.52% (1/194) 6.65 0.009989 0.047252
GO:0000228 nuclear chromosome 0.52% (1/194) 6.65 0.009989 0.047252
GO:0005663 DNA replication factor C complex 0.52% (1/194) 6.65 0.009989 0.047252
GO:0008521 acetyl-CoA transmembrane transporter activity 0.52% (1/194) 6.65 0.009989 0.047252
GO:0071077 adenosine 3',5'-bisphosphate transmembrane transporter activity 0.52% (1/194) 6.65 0.009989 0.047252
GO:0042887 amide transmembrane transporter activity 0.52% (1/194) 6.65 0.009989 0.047252
GO:0003689 DNA clamp loader activity 0.52% (1/194) 6.65 0.009989 0.047252
GO:0051751 alpha-1,4-mannosyltransferase activity 0.52% (1/194) 6.65 0.009989 0.047252
GO:0003678 DNA helicase activity 1.03% (2/194) 3.94 0.007202 0.047377
GO:0046474 glycerophospholipid biosynthetic process 1.03% (2/194) 3.94 0.007202 0.047377
GO:1901576 organic substance biosynthetic process 5.67% (11/194) 1.17 0.010609 0.049083
GO:0043170 macromolecule metabolic process 11.34% (22/194) 0.76 0.01092 0.049435
GO:0006650 glycerophospholipid metabolic process 1.03% (2/194) 3.65 0.010865 0.049718
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_96 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_120 0.033 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_228 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_247 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_261 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_8 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_49 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_58 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_103 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_135 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_138 0.026 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_157 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_185 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_249 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_37 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_94 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_167 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_216 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_220 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_325 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_20 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_50 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_79 0.027 Archaeplastida Compare
Oryza sativa HCCA Cluster_166 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_172 0.032 Archaeplastida Compare
Oryza sativa HCCA Cluster_199 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_227 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_249 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_262 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_324 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_350 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_361 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_5 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_14 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_61 0.034 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_168 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_169 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_210 0.032 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_228 0.027 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_251 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_271 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_289 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_73 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_204 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_483 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_85 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_196 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_29 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_31 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_126 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_132 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_150 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_161 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_208 0.032 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_244 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_261 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_267 0.031 Archaeplastida Compare
Vitis vinifera HCCA Cluster_29 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_134 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_187 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_194 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_198 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_92 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_178 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_183 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_213 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_218 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_263 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_295 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_301 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_304 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_344 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_96 0.026 LandPlants Compare
Amborella trichopoda HCCA Cluster_120 0.026 LandPlants Compare
Amborella trichopoda HCCA Cluster_177 0.016 LandPlants Compare
Amborella trichopoda HCCA Cluster_189 0.016 LandPlants Compare
Amborella trichopoda HCCA Cluster_220 0.015 LandPlants Compare
Amborella trichopoda HCCA Cluster_228 0.016 LandPlants Compare
Amborella trichopoda HCCA Cluster_243 0.015 LandPlants Compare
Amborella trichopoda HCCA Cluster_247 0.023 LandPlants Compare
Amborella trichopoda HCCA Cluster_261 0.018 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_49 0.018 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_58 0.017 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_103 0.019 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_135 0.018 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_157 0.016 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_185 0.022 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_192 0.016 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_208 0.016 LandPlants Compare
Arabidopsis thaliana HCCA Cluster_249 0.019 LandPlants Compare
Gingko biloba HCCA Cluster_220 0.023 LandPlants Compare
Gingko biloba HCCA Cluster_301 0.016 LandPlants Compare
Gingko biloba HCCA Cluster_302 0.016 LandPlants Compare
Oryza sativa HCCA Cluster_10 0.018 LandPlants Compare
Oryza sativa HCCA Cluster_50 0.016 LandPlants Compare
Oryza sativa HCCA Cluster_79 0.027 LandPlants Compare
Oryza sativa HCCA Cluster_166 0.016 LandPlants Compare
Oryza sativa HCCA Cluster_172 0.025 LandPlants Compare
Oryza sativa HCCA Cluster_185 0.016 LandPlants Compare
Oryza sativa HCCA Cluster_199 0.018 LandPlants Compare
Oryza sativa HCCA Cluster_227 0.015 LandPlants Compare
Oryza sativa HCCA Cluster_262 0.024 LandPlants Compare
Oryza sativa HCCA Cluster_293 0.014 LandPlants Compare
Oryza sativa HCCA Cluster_350 0.023 LandPlants Compare
Oryza sativa HCCA Cluster_361 0.019 LandPlants Compare
Physcomitrella patens HCCA Cluster_14 0.015 LandPlants Compare
Physcomitrella patens HCCA Cluster_27 0.016 LandPlants Compare
Physcomitrella patens HCCA Cluster_61 0.03 LandPlants Compare
Physcomitrella patens HCCA Cluster_131 0.015 LandPlants Compare
Physcomitrella patens HCCA Cluster_168 0.018 LandPlants Compare
Physcomitrella patens HCCA Cluster_169 0.02 LandPlants Compare
Physcomitrella patens HCCA Cluster_210 0.029 LandPlants Compare
Physcomitrella patens HCCA Cluster_228 0.027 LandPlants Compare
Physcomitrella patens HCCA Cluster_251 0.016 LandPlants Compare
Physcomitrella patens HCCA Cluster_271 0.017 LandPlants Compare
Physcomitrella patens HCCA Cluster_275 0.019 LandPlants Compare
Physcomitrella patens HCCA Cluster_289 0.02 LandPlants Compare
Picea abies HCCA Cluster_73 0.025 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_73 0.016 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_85 0.019 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_147 0.018 LandPlants Compare
Selaginella moellendorffii HCCA Cluster_196 0.016 LandPlants Compare
Solanum lycopersicum HCCA Cluster_29 0.019 LandPlants Compare
Solanum lycopersicum HCCA Cluster_126 0.019 LandPlants Compare
Solanum lycopersicum HCCA Cluster_132 0.02 LandPlants Compare
Solanum lycopersicum HCCA Cluster_150 0.021 LandPlants Compare
Solanum lycopersicum HCCA Cluster_161 0.021 LandPlants Compare
Solanum lycopersicum HCCA Cluster_196 0.015 LandPlants Compare
Solanum lycopersicum HCCA Cluster_244 0.02 LandPlants Compare
Solanum lycopersicum HCCA Cluster_261 0.021 LandPlants Compare
Solanum lycopersicum HCCA Cluster_267 0.031 LandPlants Compare
Vitis vinifera HCCA Cluster_18 0.018 LandPlants Compare
Vitis vinifera HCCA Cluster_29 0.019 LandPlants Compare
Vitis vinifera HCCA Cluster_134 0.016 LandPlants Compare
Vitis vinifera HCCA Cluster_187 0.017 LandPlants Compare
Vitis vinifera HCCA Cluster_198 0.021 LandPlants Compare
Zea mays HCCA Cluster_24 0.015 LandPlants Compare
Zea mays HCCA Cluster_154 0.015 LandPlants Compare
Zea mays HCCA Cluster_178 0.017 LandPlants Compare
Zea mays HCCA Cluster_183 0.024 LandPlants Compare
Zea mays HCCA Cluster_213 0.021 LandPlants Compare
Zea mays HCCA Cluster_218 0.024 LandPlants Compare
Zea mays HCCA Cluster_251 0.018 LandPlants Compare
Zea mays HCCA Cluster_263 0.018 LandPlants Compare
Zea mays HCCA Cluster_264 0.015 LandPlants Compare
Zea mays HCCA Cluster_295 0.017 LandPlants Compare
Zea mays HCCA Cluster_301 0.017 LandPlants Compare
Zea mays HCCA Cluster_304 0.019 LandPlants Compare
Zea mays HCCA Cluster_344 0.018 LandPlants Compare
Zea mays HCCA Cluster_355 0.015 LandPlants Compare
Sequences (194) (download table)

InterPro Domains

GO Terms

Family Terms