Coexpression cluster: Cluster_202 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006304 DNA modification 10.31% (10/97) 3.96 0.0 0.0
GO:0044728 DNA methylation or demethylation 10.31% (10/97) 3.96 0.0 0.0
GO:0006305 DNA alkylation 10.31% (10/97) 3.98 0.0 0.0
GO:0006306 DNA methylation 10.31% (10/97) 3.98 0.0 0.0
GO:0090304 nucleic acid metabolic process 27.84% (27/97) 1.93 0.0 1e-06
GO:0043414 macromolecule methylation 13.4% (13/97) 2.84 0.0 3e-06
GO:0032259 methylation 13.4% (13/97) 2.84 0.0 3e-06
GO:0006139 nucleobase-containing compound metabolic process 28.87% (28/97) 1.59 0.0 6e-06
GO:0016070 RNA metabolic process 19.59% (19/97) 1.95 0.0 2.7e-05
GO:0006259 DNA metabolic process 14.43% (14/97) 2.41 0.0 2.7e-05
GO:0006396 RNA processing 14.43% (14/97) 2.34 1e-06 4.2e-05
GO:0046483 heterocycle metabolic process 28.87% (28/97) 1.39 1e-06 7.4e-05
GO:0016458 gene silencing 9.28% (9/97) 3.06 1e-06 7.6e-05
GO:0034641 cellular nitrogen compound metabolic process 28.87% (28/97) 1.3 4e-06 0.000199
GO:0080188 RNA-directed DNA methylation 3.09% (3/97) 6.4 5e-06 0.000242
GO:0006725 cellular aromatic compound metabolic process 28.87% (28/97) 1.25 8e-06 0.000359
GO:0005634 nucleus 55.67% (54/97) 0.71 9e-06 0.000383
GO:0030422 production of siRNA involved in RNA interference 6.19% (6/97) 3.6 1.1e-05 0.00043
GO:0070918 production of small RNA involved in gene silencing by RNA 6.19% (6/97) 3.57 1.2e-05 0.000437
GO:0031050 dsRNA fragmentation 6.19% (6/97) 3.57 1.2e-05 0.000437
GO:0051607 defense response to virus 6.19% (6/97) 3.51 1.5e-05 0.000526
GO:0031047 gene silencing by RNA 7.22% (7/97) 3.13 1.6e-05 0.000529
GO:0044424 intracellular part 89.69% (87/97) 0.32 1.7e-05 0.000535
GO:1901360 organic cyclic compound metabolic process 28.87% (28/97) 1.18 2e-05 0.000583
GO:0052018 modulation by symbiont of RNA levels in host 5.15% (5/97) 3.82 2.9e-05 0.000742
GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction 5.15% (5/97) 3.82 2.9e-05 0.000742
GO:0009616 virus induced gene silencing 5.15% (5/97) 3.82 2.9e-05 0.000742
GO:0098586 cellular response to virus 5.15% (5/97) 3.8 3e-05 0.000751
GO:0010629 negative regulation of gene expression 10.31% (10/97) 2.35 2.8e-05 0.000789
GO:0035821 modification of morphology or physiology of other organism 5.15% (5/97) 3.68 4.6e-05 0.000966
GO:0044003 modification by symbiont of host morphology or physiology 5.15% (5/97) 3.68 4.6e-05 0.000966
GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction 5.15% (5/97) 3.68 4.6e-05 0.000966
GO:0009615 response to virus 6.19% (6/97) 3.25 4.2e-05 0.001002
GO:0043170 macromolecule metabolic process 34.02% (33/97) 0.99 4.5e-05 0.001033
GO:0051701 interaction with host 5.15% (5/97) 3.57 6.7e-05 0.001365
GO:0016571 histone methylation 7.22% (7/97) 2.8 6.9e-05 0.001382
GO:0006479 protein methylation 7.22% (7/97) 2.78 7.4e-05 0.001398
GO:0008213 protein alkylation 7.22% (7/97) 2.78 7.4e-05 0.001398
GO:0010605 negative regulation of macromolecule metabolic process 10.31% (10/97) 2.17 7.8e-05 0.001425
GO:0035196 production of miRNAs involved in gene silencing by miRNA 5.15% (5/97) 3.46 9.4e-05 0.001534
GO:0055029 nuclear DNA-directed RNA polymerase complex 3.09% (3/97) 5.08 9.4e-05 0.00156
GO:0030880 RNA polymerase complex 3.09% (3/97) 5.08 9.4e-05 0.00156
GO:0000428 DNA-directed RNA polymerase complex 3.09% (3/97) 5.08 9.4e-05 0.00156
GO:0043412 macromolecule modification 19.59% (19/97) 1.39 8.7e-05 0.001565
GO:0044419 interspecies interaction between organisms 5.15% (5/97) 3.44 0.000101 0.001614
GO:0006325 chromatin organization 9.28% (9/97) 2.27 0.000108 0.001679
GO:0009892 negative regulation of metabolic process 10.31% (10/97) 2.11 0.000113 0.001714
GO:0034968 histone lysine methylation 6.19% (6/97) 2.88 0.000172 0.002565
GO:0018022 peptidyl-lysine methylation 6.19% (6/97) 2.87 0.000176 0.002573
GO:0016570 histone modification 7.22% (7/97) 2.5 0.000252 0.003607
GO:0043231 intracellular membrane-bounded organelle 78.35% (76/97) 0.35 0.000293 0.004113
GO:0043227 membrane-bounded organelle 78.35% (76/97) 0.35 0.000315 0.004331
GO:0043687 post-translational protein modification 4.12% (4/97) 3.56 0.000383 0.005174
GO:0061695 transferase complex, transferring phosphorus-containing groups 3.09% (3/97) 4.33 0.000448 0.005722
GO:0008380 RNA splicing 6.19% (6/97) 2.63 0.000439 0.005816
GO:0002252 immune effector process 6.19% (6/97) 2.62 0.000447 0.005822
GO:0040029 regulation of gene expression, epigenetic 6.19% (6/97) 2.61 0.000474 0.005948
GO:0043226 organelle 78.35% (76/97) 0.33 0.000507 0.006157
GO:0043229 intracellular organelle 78.35% (76/97) 0.33 0.0005 0.006168
GO:0016569 covalent chromatin modification 7.22% (7/97) 2.31 0.000544 0.006383
GO:0006807 nitrogen compound metabolic process 34.02% (33/97) 0.8 0.000554 0.006396
GO:0044464 cell part 91.75% (89/97) 0.22 0.000543 0.006477
GO:0044260 cellular macromolecule metabolic process 25.77% (25/97) 0.96 0.000673 0.007524
GO:0010267 production of ta-siRNAs involved in RNA interference 4.12% (4/97) 3.35 0.000663 0.007537
GO:0006312 mitotic recombination 3.09% (3/97) 3.89 0.001098 0.011908
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 3.09% (3/97) 3.89 0.001098 0.011908
GO:0018205 peptidyl-lysine modification 6.19% (6/97) 2.32 0.001343 0.014357
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 4.12% (4/97) 3.0 0.001611 0.014984
GO:0004386 helicase activity 4.12% (4/97) 3.02 0.001529 0.014998
GO:0034062 5'-3' RNA polymerase activity 3.09% (3/97) 3.75 0.001467 0.015005
GO:0097747 RNA polymerase activity 3.09% (3/97) 3.75 0.001467 0.015005
GO:0009560 embryo sac egg cell differentiation 4.12% (4/97) 3.03 0.001489 0.015017
GO:0006342 chromatin silencing 5.15% (5/97) 2.59 0.001515 0.015064
GO:0010050 vegetative phase change 3.09% (3/97) 3.7 0.001605 0.015125
GO:0016779 nucleotidyltransferase activity 4.12% (4/97) 2.99 0.001654 0.01518
GO:0005665 RNA polymerase II, core complex 2.06% (2/97) 5.14 0.001443 0.015194
GO:0140098 catalytic activity, acting on RNA 5.15% (5/97) 2.57 0.001572 0.015213
GO:0045814 negative regulation of gene expression, epigenetic 5.15% (5/97) 2.57 0.001602 0.015289
GO:0006260 DNA replication 5.15% (5/97) 2.46 0.002238 0.019783
GO:0006464 cellular protein modification process 14.43% (14/97) 1.24 0.002229 0.01995
GO:0036211 protein modification process 14.43% (14/97) 1.24 0.002229 0.01995
GO:0045892 negative regulation of transcription, DNA-templated 6.19% (6/97) 2.14 0.002444 0.020833
GO:1903507 negative regulation of nucleic acid-templated transcription 6.19% (6/97) 2.14 0.002444 0.020833
GO:1902679 negative regulation of RNA biosynthetic process 6.19% (6/97) 2.14 0.002444 0.020833
GO:0008283 cell proliferation 4.12% (4/97) 2.82 0.002552 0.021497
GO:0051253 negative regulation of RNA metabolic process 6.19% (6/97) 2.12 0.00264 0.021976
GO:0010558 negative regulation of macromolecule biosynthetic process 6.19% (6/97) 2.09 0.002955 0.024041
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 6.19% (6/97) 2.09 0.002955 0.024041
GO:0018193 peptidyl-amino acid modification 6.19% (6/97) 2.08 0.003029 0.024364
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 6.19% (6/97) 2.08 0.003066 0.024391
GO:0048519 negative regulation of biological process 11.34% (11/97) 1.39 0.003193 0.025125
GO:1990817 RNA adenylyltransferase activity 1.03% (1/97) 8.14 0.003542 0.025364
GO:0043764 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase activity 1.03% (1/97) 8.14 0.003542 0.025364
GO:0080157 regulation of plant-type cell wall organization or biogenesis 1.03% (1/97) 8.14 0.003542 0.025364
GO:0005666 RNA polymerase III complex 1.03% (1/97) 8.14 0.003542 0.025364
GO:0004810 tRNA adenylyltransferase activity 1.03% (1/97) 8.14 0.003542 0.025364
GO:0009304 tRNA transcription 1.03% (1/97) 8.14 0.003542 0.025364
GO:0010521 telomerase inhibitor activity 1.03% (1/97) 8.14 0.003542 0.025364
GO:0031327 negative regulation of cellular biosynthetic process 6.19% (6/97) 2.05 0.003337 0.025972
GO:0051567 histone H3-K9 methylation 4.12% (4/97) 2.67 0.003739 0.026249
GO:0061647 histone H3-K9 modification 4.12% (4/97) 2.67 0.003739 0.026249
GO:0005732 small nucleolar ribonucleoprotein complex 2.06% (2/97) 4.44 0.003819 0.026548
GO:0009890 negative regulation of biosynthetic process 6.19% (6/97) 2.04 0.0035 0.026947
GO:0022412 cellular process involved in reproduction in multicellular organism 4.12% (4/97) 2.59 0.004454 0.030663
GO:0009086 methionine biosynthetic process 3.09% (3/97) 3.13 0.004995 0.034058
GO:0008033 tRNA processing 2.06% (2/97) 4.19 0.005402 0.036486
GO:0016444 somatic cell DNA recombination 2.06% (2/97) 4.14 0.005748 0.03811
GO:0006555 methionine metabolic process 3.09% (3/97) 3.05 0.005743 0.038429
GO:0007267 cell-cell signaling 3.09% (3/97) 3.01 0.006222 0.040874
GO:0023052 signaling 3.09% (3/97) 3.0 0.006387 0.041577
GO:0051172 negative regulation of nitrogen compound metabolic process 6.19% (6/97) 1.85 0.006585 0.042474
GO:0045132 meiotic chromosome segregation 3.09% (3/97) 2.96 0.006898 0.043708
GO:0006399 tRNA metabolic process 3.09% (3/97) 2.96 0.006898 0.043708
GO:0098813 nuclear chromosome segregation 3.09% (3/97) 2.94 0.007073 0.04404
GO:0003938 IMP dehydrogenase activity 1.03% (1/97) 7.14 0.007073 0.04442
GO:0004683 calmodulin-dependent protein kinase activity 2.06% (2/97) 3.97 0.007235 0.044656
GO:0031048 chromatin silencing by small RNA 3.09% (3/97) 2.89 0.007802 0.047744
GO:0009067 aspartate family amino acid biosynthetic process 3.09% (3/97) 2.88 0.00799 0.048076
GO:0031324 negative regulation of cellular metabolic process 6.19% (6/97) 1.79 0.007929 0.048112
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_23 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_25 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_26 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_39 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_136 0.028 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_152 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_168 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_182 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_204 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_225 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_227 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_260 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_269 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_95 0.017 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_148 0.02 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_156 0.019 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_176 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_60 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_64 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_124 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_26 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_28 0.028 Gene family Compare
Oryza sativa HCCA cluster Cluster_41 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_65 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_67 0.021 Gene family Compare
Oryza sativa HCCA cluster Cluster_148 0.025 Gene family Compare
Oryza sativa HCCA cluster Cluster_151 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_182 0.026 Gene family Compare
Oryza sativa HCCA cluster Cluster_274 0.021 Gene family Compare
Oryza sativa HCCA cluster Cluster_279 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_306 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_5 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_64 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_93 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_276 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_293 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_339 0.019 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_20 0.019 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_41 0.019 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_165 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_166 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_182 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_13 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_88 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_152 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_176 0.021 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_211 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_216 0.026 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_217 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_224 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_229 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_231 0.025 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_254 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_255 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_290 0.02 Gene family Compare
Vitis vinifera HCCA cluster Cluster_39 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_72 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_99 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_118 0.02 Gene family Compare
Vitis vinifera HCCA cluster Cluster_154 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_170 0.021 Gene family Compare
Vitis vinifera HCCA cluster Cluster_172 0.02 Gene family Compare
Vitis vinifera HCCA cluster Cluster_189 0.021 Gene family Compare
Vitis vinifera HCCA cluster Cluster_243 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_35 0.026 Gene family Compare
Zea mays HCCA cluster Cluster_86 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_148 0.025 Gene family Compare
Zea mays HCCA cluster Cluster_162 0.025 Gene family Compare
Zea mays HCCA cluster Cluster_172 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_211 0.028 Gene family Compare
Zea mays HCCA cluster Cluster_214 0.028 Gene family Compare
Zea mays HCCA cluster Cluster_221 0.025 Gene family Compare
Zea mays HCCA cluster Cluster_259 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_272 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_294 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_307 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_316 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_344 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_346 0.03 Gene family Compare
Zea mays HCCA cluster Cluster_352 0.022 Gene family Compare
Sequences (97) (download table)

InterPro Domains

GO Terms

Family Terms