Coexpression cluster: Cluster_224 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009606 tropism 13.46% (7/52) 4.49 0.0 6e-06
GO:0009629 response to gravity 13.46% (7/52) 4.53 0.0 7e-06
GO:0009630 gravitropism 13.46% (7/52) 4.6 0.0 1e-05
GO:0043227 membrane-bounded organelle 92.31% (48/52) 0.58 1e-06 6.8e-05
GO:0005634 nucleus 67.31% (35/52) 0.99 1e-06 7.6e-05
GO:0043226 organelle 92.31% (48/52) 0.57 1e-06 7.6e-05
GO:0043231 intracellular membrane-bounded organelle 92.31% (48/52) 0.59 0.0 7.9e-05
GO:0043229 intracellular organelle 92.31% (48/52) 0.57 1e-06 8.8e-05
GO:0031047 gene silencing by RNA 11.54% (6/52) 3.81 4e-06 0.000288
GO:0051276 chromosome organization 11.54% (6/52) 3.78 5e-06 0.000289
GO:0044464 cell part 100.0% (52/52) 0.34 4e-06 0.00031
GO:0044424 intracellular part 96.15% (50/52) 0.42 8e-06 0.000416
GO:0016246 RNA interference 7.69% (4/52) 4.93 9e-06 0.00046
GO:0006259 DNA metabolic process 17.31% (9/52) 2.67 1e-05 0.000476
GO:0035194 posttranscriptional gene silencing by RNA 7.69% (4/52) 4.74 1.6e-05 0.000641
GO:0090304 nucleic acid metabolic process 26.92% (14/52) 1.88 1.5e-05 0.000645
GO:0016441 posttranscriptional gene silencing 7.69% (4/52) 4.58 2.4e-05 0.000873
GO:0016458 gene silencing 11.54% (6/52) 3.38 2.4e-05 0.000912
GO:0008278 cohesin complex 3.85% (2/52) 7.72 3.5e-05 0.001217
GO:0006325 chromatin organization 13.46% (7/52) 2.81 5.9e-05 0.001949
GO:0006346 methylation-dependent chromatin silencing 7.69% (4/52) 4.18 7.1e-05 0.00221
GO:0006139 nucleobase-containing compound metabolic process 28.85% (15/52) 1.59 7.5e-05 0.002234
GO:0006342 chromatin silencing 9.62% (5/52) 3.49 8.3e-05 0.002282
GO:0010629 negative regulation of gene expression 13.46% (7/52) 2.73 8.1e-05 0.002317
GO:0045814 negative regulation of gene expression, epigenetic 9.62% (5/52) 3.47 8.9e-05 0.002325
GO:0007059 chromosome segregation 7.69% (4/52) 4.03 0.000107 0.002695
GO:0006996 organelle organization 19.23% (10/52) 2.04 0.000128 0.003113
GO:0033044 regulation of chromosome organization 7.69% (4/52) 3.88 0.000159 0.003595
GO:0007062 sister chromatid cohesion 7.69% (4/52) 3.89 0.000155 0.003624
GO:0010605 negative regulation of macromolecule metabolic process 13.46% (7/52) 2.56 0.000175 0.00382
GO:0040029 regulation of gene expression, epigenetic 9.62% (5/52) 3.24 0.000183 0.003874
GO:0009892 negative regulation of metabolic process 13.46% (7/52) 2.49 0.00023 0.004719
GO:0010608 posttranscriptional regulation of gene expression 7.69% (4/52) 3.71 0.00025 0.004974
GO:0071840 cellular component organization or biogenesis 28.85% (15/52) 1.4 0.000322 0.006206
GO:0046483 heterocycle metabolic process 28.85% (15/52) 1.39 0.000357 0.006509
GO:0043412 macromolecule modification 23.08% (12/52) 1.63 0.000357 0.006684
GO:0016043 cellular component organization 26.92% (14/52) 1.41 0.000514 0.009116
GO:0006396 RNA processing 13.46% (7/52) 2.24 0.000645 0.011134
GO:0034641 cellular nitrogen compound metabolic process 28.85% (15/52) 1.3 0.000666 0.011204
GO:1902679 negative regulation of RNA biosynthetic process 9.62% (5/52) 2.78 0.00079 0.012342
GO:0045892 negative regulation of transcription, DNA-templated 9.62% (5/52) 2.78 0.00079 0.012342
GO:1903507 negative regulation of nucleic acid-templated transcription 9.62% (5/52) 2.78 0.00079 0.012342
GO:0051253 negative regulation of RNA metabolic process 9.62% (5/52) 2.76 0.000847 0.012924
GO:0016569 covalent chromatin modification 9.62% (5/52) 2.73 0.000938 0.01338
GO:0010558 negative regulation of macromolecule biosynthetic process 9.62% (5/52) 2.73 0.000938 0.01338
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 9.62% (5/52) 2.73 0.000938 0.01338
GO:0006725 cellular aromatic compound metabolic process 28.85% (15/52) 1.25 0.000989 0.013512
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 9.62% (5/52) 2.71 0.00097 0.013541
GO:0031327 negative regulation of cellular biosynthetic process 9.62% (5/52) 2.69 0.001048 0.014028
GO:0009890 negative regulation of biosynthetic process 9.62% (5/52) 2.68 0.001094 0.014356
GO:0033043 regulation of organelle organization 7.69% (4/52) 3.06 0.00136 0.017499
GO:0008251 tRNA-specific adenosine deaminase activity 1.92% (1/52) 9.04 0.001899 0.020093
GO:0006382 adenosine to inosine editing 1.92% (1/52) 9.04 0.001899 0.020093
GO:0000120 RNA polymerase I transcription factor complex 1.92% (1/52) 9.04 0.001899 0.020093
GO:0002100 tRNA wobble adenosine to inosine editing 1.92% (1/52) 9.04 0.001899 0.020093
GO:0070860 RNA polymerase I core factor complex 1.92% (1/52) 9.04 0.001899 0.020093
GO:0051751 alpha-1,4-mannosyltransferase activity 1.92% (1/52) 9.04 0.001899 0.020093
GO:1901360 organic cyclic compound metabolic process 28.85% (15/52) 1.18 0.001606 0.020264
GO:0051172 negative regulation of nitrogen compound metabolic process 9.62% (5/52) 2.49 0.001952 0.020329
GO:0006997 nucleus organization 3.85% (2/52) 5.04 0.001692 0.02055
GO:0048519 negative regulation of biological process 15.38% (8/52) 1.83 0.001679 0.020781
GO:0035196 production of miRNAs involved in gene silencing by miRNA 5.77% (3/52) 3.63 0.001865 0.021853
GO:0043170 macromolecule metabolic process 34.62% (18/52) 1.01 0.001837 0.021907
GO:0003682 chromatin binding 3.85% (2/52) 4.83 0.002258 0.023141
GO:0031324 negative regulation of cellular metabolic process 9.62% (5/52) 2.43 0.002319 0.023401
GO:0030422 production of siRNA involved in RNA interference 5.77% (3/52) 3.5 0.002407 0.023925
GO:0031050 dsRNA fragmentation 5.77% (3/52) 3.47 0.002556 0.024301
GO:0070918 production of small RNA involved in gene silencing by RNA 5.77% (3/52) 3.47 0.002556 0.024301
GO:0048518 positive regulation of biological process 13.46% (7/52) 1.9 0.002531 0.024778
GO:0051607 defense response to virus 5.77% (3/52) 3.41 0.002871 0.026905
GO:0048522 positive regulation of cellular process 11.54% (6/52) 2.04 0.003203 0.029592
GO:0009605 response to external stimulus 19.23% (10/52) 1.4 0.00383 0.033055
GO:0022402 cell cycle process 9.62% (5/52) 2.28 0.003633 0.033099
GO:2000023 regulation of lateral root development 1.92% (1/52) 8.04 0.003795 0.03319
GO:0005652 nuclear lamina 1.92% (1/52) 8.04 0.003795 0.03319
GO:0044452 nucleolar part 1.92% (1/52) 8.04 0.003795 0.03319
GO:0016070 RNA metabolic process 15.38% (8/52) 1.6 0.004362 0.037165
GO:0051128 regulation of cellular component organization 7.69% (4/52) 2.55 0.004841 0.039204
GO:0006305 DNA alkylation 5.77% (3/52) 3.14 0.004799 0.039355
GO:0006306 DNA methylation 5.77% (3/52) 3.14 0.004799 0.039355
GO:0044728 DNA methylation or demethylation 5.77% (3/52) 3.13 0.00495 0.039599
GO:0006304 DNA modification 5.77% (3/52) 3.12 0.005026 0.039725
GO:0009615 response to virus 5.77% (3/52) 3.15 0.004725 0.03974
GO:0016363 nuclear matrix 1.92% (1/52) 7.46 0.005687 0.043887
GO:0004000 adenosine deaminase activity 1.92% (1/52) 7.46 0.005687 0.043887
GO:0044260 cellular macromolecule metabolic process 26.92% (14/52) 1.02 0.00639 0.048746
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_47 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_66 0.03 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_84 0.022 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_95 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_139 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_273 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_313 0.024 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_191 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_82 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_85 0.014 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_120 0.027 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_124 0.022 Gene family Compare
Oryza sativa HCCA cluster Cluster_2 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_26 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_28 0.036 Gene family Compare
Oryza sativa HCCA cluster Cluster_65 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_149 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_182 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_205 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_273 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_278 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_297 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_436 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_69 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_85 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_300 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_303 0.02 Gene family Compare
Picea abies HCCA cluster Cluster_343 0.02 Gene family Compare
Picea abies HCCA cluster Cluster_369 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_374 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_390 0.021 Gene family Compare
Picea abies HCCA cluster Cluster_397 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_434 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_455 0.02 Gene family Compare
Picea abies HCCA cluster Cluster_461 0.019 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_130 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_166 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_180 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_14 0.027 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_31 0.021 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_37 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_45 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_59 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_121 0.021 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_140 0.03 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_147 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_162 0.027 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_176 0.02 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_197 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_216 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_217 0.031 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_221 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_244 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_250 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_274 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_281 0.029 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_290 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_7 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_82 0.02 Gene family Compare
Vitis vinifera HCCA cluster Cluster_103 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_172 0.029 Gene family Compare
Vitis vinifera HCCA cluster Cluster_194 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_195 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_206 0.02 Gene family Compare
Vitis vinifera HCCA cluster Cluster_216 0.033 Gene family Compare
Vitis vinifera HCCA cluster Cluster_226 0.029 Gene family Compare
Vitis vinifera HCCA cluster Cluster_228 0.032 Gene family Compare
Vitis vinifera HCCA cluster Cluster_230 0.042 Gene family Compare
Vitis vinifera HCCA cluster Cluster_245 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_15 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_16 0.042 Gene family Compare
Zea mays HCCA cluster Cluster_17 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_47 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_74 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_86 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_148 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_174 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_238 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_271 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_272 0.066 Gene family Compare
Zea mays HCCA cluster Cluster_276 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_322 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_326 0.023 Gene family Compare
Zea mays HCCA cluster Cluster_328 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_540 0.018 Gene family Compare
Sequences (52) (download table)

InterPro Domains

GO Terms

Family Terms