Coexpression cluster: Cluster_245 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044434 chloroplast part 42.65% (29/68) 3.27 0.0 0.0
GO:0009570 chloroplast stroma 33.82% (23/68) 3.97 0.0 0.0
GO:0009532 plastid stroma 33.82% (23/68) 3.97 0.0 0.0
GO:0044435 plastid part 42.65% (29/68) 3.23 0.0 0.0
GO:0009507 chloroplast 52.94% (36/68) 1.95 0.0 0.0
GO:0009536 plastid 52.94% (36/68) 1.92 0.0 0.0
GO:0009941 chloroplast envelope 23.53% (16/68) 3.59 0.0 0.0
GO:0009526 plastid envelope 23.53% (16/68) 3.57 0.0 0.0
GO:0044422 organelle part 47.06% (32/68) 2.05 0.0 0.0
GO:0044446 intracellular organelle part 47.06% (32/68) 2.05 0.0 0.0
GO:0031967 organelle envelope 23.53% (16/68) 3.42 0.0 0.0
GO:0031975 envelope 23.53% (16/68) 3.42 0.0 0.0
GO:0044444 cytoplasmic part 73.53% (50/68) 1.04 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 22.06% (15/68) 1.95 5e-06 0.000307
GO:0006790 sulfur compound metabolic process 14.71% (10/68) 2.52 9e-06 0.000486
GO:0043085 positive regulation of catalytic activity 7.35% (5/68) 4.12 1.1e-05 0.000536
GO:0044093 positive regulation of molecular function 7.35% (5/68) 4.09 1.1e-05 0.000548
GO:0009579 thylakoid 10.29% (7/68) 3.11 1.7e-05 0.000762
GO:1901135 carbohydrate derivative metabolic process 16.18% (11/68) 2.01 7.9e-05 0.003359
GO:0003989 acetyl-CoA carboxylase activity 2.94% (2/68) 7.07 9.1e-05 0.003682
GO:1901564 organonitrogen compound metabolic process 33.82% (23/68) 1.16 0.000104 0.004039
GO:0016885 ligase activity, forming carbon-carbon bonds 2.94% (2/68) 6.85 0.000127 0.004288
GO:0016421 CoA carboxylase activity 2.94% (2/68) 6.85 0.000127 0.004288
GO:0050790 regulation of catalytic activity 7.35% (5/68) 3.33 0.000142 0.004615
GO:0044249 cellular biosynthetic process 30.88% (21/68) 1.22 0.000126 0.00465
GO:0055086 nucleobase-containing small molecule metabolic process 13.24% (9/68) 2.13 0.000206 0.006433
GO:0005976 polysaccharide metabolic process 11.76% (8/68) 2.3 0.000215 0.006463
GO:0009528 plastid inner membrane 4.41% (3/68) 4.65 0.000234 0.00679
GO:0044281 small molecule metabolic process 25.0% (17/68) 1.34 0.000257 0.007201
GO:0003735 structural constituent of ribosome 8.82% (6/68) 2.75 0.000269 0.007289
GO:0044042 glucan metabolic process 8.82% (6/68) 2.7 0.00033 0.007662
GO:0006073 cellular glucan metabolic process 8.82% (6/68) 2.7 0.00033 0.007662
GO:0043603 cellular amide metabolic process 10.29% (7/68) 2.45 0.000295 0.007725
GO:0019866 organelle inner membrane 5.88% (4/68) 3.63 0.000312 0.007933
GO:0008138 protein tyrosine/serine/threonine phosphatase activity 2.94% (2/68) 6.19 0.000329 0.008116
GO:0001871 pattern binding 2.94% (2/68) 6.07 0.000395 0.008444
GO:0030247 polysaccharide binding 2.94% (2/68) 6.07 0.000395 0.008444
GO:0065009 regulation of molecular function 7.35% (5/68) 3.03 0.000376 0.008499
GO:1901576 organic substance biosynthetic process 30.88% (21/68) 1.09 0.000434 0.009056
GO:0009117 nucleotide metabolic process 11.76% (8/68) 2.1 0.00053 0.010763
GO:0006753 nucleoside phosphate metabolic process 11.76% (8/68) 2.1 0.000544 0.01078
GO:0000023 maltose metabolic process 5.88% (4/68) 3.41 0.000564 0.010918
GO:0009058 biosynthetic process 30.88% (21/68) 1.05 0.000651 0.012306
GO:0044247 cellular polysaccharide catabolic process 2.94% (2/68) 5.57 0.000807 0.012613
GO:0000312 plastid small ribosomal subunit 2.94% (2/68) 5.57 0.000807 0.012613
GO:0009251 glucan catabolic process 2.94% (2/68) 5.57 0.000807 0.012613
GO:0000311 plastid large ribosomal subunit 2.94% (2/68) 5.57 0.000807 0.012613
GO:0005983 starch catabolic process 2.94% (2/68) 5.57 0.000807 0.012613
GO:0009059 macromolecule biosynthetic process 16.18% (11/68) 1.61 0.000847 0.012996
GO:0045036 protein targeting to chloroplast 4.41% (3/68) 4.09 0.000742 0.013113
GO:0072596 establishment of protein localization to chloroplast 4.41% (3/68) 4.09 0.000742 0.013113
GO:0072598 protein localization to chloroplast 4.41% (3/68) 4.09 0.000742 0.013113
GO:0019693 ribose phosphate metabolic process 10.29% (7/68) 2.21 0.000772 0.013356
GO:0008652 cellular amino acid biosynthetic process 8.82% (6/68) 2.42 0.000893 0.013439
GO:0005198 structural molecule activity 8.82% (6/68) 2.41 0.000924 0.013654
GO:0044424 intracellular part 88.24% (60/68) 0.3 0.001025 0.014877
GO:0005975 carbohydrate metabolic process 14.71% (10/68) 1.66 0.001128 0.016092
GO:0000315 organellar large ribosomal subunit 2.94% (2/68) 5.26 0.001238 0.016772
GO:0043231 intracellular membrane-bounded organelle 79.41% (54/68) 0.37 0.001223 0.016849
GO:0019252 starch biosynthetic process 5.88% (4/68) 3.11 0.00122 0.0171
GO:0043227 membrane-bounded organelle 79.41% (54/68) 0.37 0.00129 0.017187
GO:0042170 plastid membrane 4.41% (3/68) 3.8 0.001338 0.01726
GO:0005984 disaccharide metabolic process 5.88% (4/68) 3.06 0.00137 0.017406
GO:0006520 cellular amino acid metabolic process 10.29% (7/68) 2.08 0.001332 0.017463
GO:0019203 carbohydrate phosphatase activity 2.94% (2/68) 4.95 0.0019 0.021164
GO:0044275 cellular carbohydrate catabolic process 2.94% (2/68) 4.95 0.0019 0.021164
GO:0006807 nitrogen compound metabolic process 35.29% (24/68) 0.85 0.001697 0.021231
GO:0034641 cellular nitrogen compound metabolic process 25.0% (17/68) 1.09 0.001765 0.021418
GO:0000314 organellar small ribosomal subunit 2.94% (2/68) 5.01 0.001757 0.021642
GO:0044464 cell part 92.65% (63/68) 0.23 0.001892 0.021669
GO:0009311 oligosaccharide metabolic process 5.88% (4/68) 2.94 0.001866 0.02167
GO:0043226 organelle 79.41% (54/68) 0.35 0.001846 0.021753
GO:0043229 intracellular organelle 79.41% (54/68) 0.35 0.001825 0.021821
GO:0051186 cofactor metabolic process 11.76% (8/68) 1.8 0.002041 0.022426
GO:0006412 translation 7.35% (5/68) 2.46 0.002147 0.023269
GO:0043043 peptide biosynthetic process 7.35% (5/68) 2.45 0.00225 0.024072
GO:2001070 starch binding 1.47% (1/68) 8.65 0.002483 0.024926
GO:0000906 6,7-dimethyl-8-ribityllumazine synthase activity 1.47% (1/68) 8.65 0.002483 0.024926
GO:0042973 glucan endo-1,3-beta-D-glucosidase activity 1.47% (1/68) 8.65 0.002483 0.024926
GO:0006574 valine catabolic process 1.47% (1/68) 8.65 0.002483 0.024926
GO:0006518 peptide metabolic process 7.35% (5/68) 2.4 0.002613 0.024991
GO:0006082 organic acid metabolic process 17.65% (12/68) 1.33 0.002608 0.025241
GO:0044264 cellular polysaccharide metabolic process 8.82% (6/68) 2.1 0.002716 0.025378
GO:0043436 oxoacid metabolic process 17.65% (12/68) 1.33 0.002597 0.025436
GO:0000271 polysaccharide biosynthetic process 8.82% (6/68) 2.11 0.002692 0.025448
GO:0044436 thylakoid part 7.35% (5/68) 2.4 0.002584 0.025615
GO:0005982 starch metabolic process 5.88% (4/68) 2.83 0.002435 0.025707
GO:1901657 glycosyl compound metabolic process 5.88% (4/68) 2.76 0.002933 0.027094
GO:0016854 racemase and epimerase activity 2.94% (2/68) 4.61 0.003053 0.027887
GO:0006732 coenzyme metabolic process 8.82% (6/68) 2.06 0.003172 0.028654
GO:0043604 amide biosynthetic process 7.35% (5/68) 2.31 0.003427 0.030614
GO:0010319 stromule 2.94% (2/68) 4.44 0.003826 0.033812
GO:0044237 cellular metabolic process 41.18% (28/68) 0.67 0.004049 0.035394
GO:0034645 cellular macromolecule biosynthetic process 13.24% (9/68) 1.51 0.004181 0.036157
GO:0009832 plant-type cell wall biogenesis 4.41% (3/68) 3.18 0.00446 0.038166
GO:0089721 phosphoenolpyruvate transmembrane transporter activity 1.47% (1/68) 7.65 0.004961 0.038779
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity 1.47% (1/68) 7.65 0.004961 0.038779
GO:0006573 valine metabolic process 1.47% (1/68) 7.65 0.004961 0.038779
GO:0009374 biotin binding 1.47% (1/68) 7.65 0.004961 0.038779
GO:0004075 biotin carboxylase activity 1.47% (1/68) 7.65 0.004961 0.038779
GO:0015121 phosphoenolpyruvate:phosphate antiporter activity 1.47% (1/68) 7.65 0.004961 0.038779
GO:0080042 ADP-glucose pyrophosphohydrolase activity 1.47% (1/68) 7.65 0.004961 0.038779
GO:0003844 1,4-alpha-glucan branching enzyme activity 1.47% (1/68) 7.65 0.004961 0.038779
GO:0044262 cellular carbohydrate metabolic process 8.82% (6/68) 1.91 0.005152 0.039516
GO:0006470 protein dephosphorylation 2.94% (2/68) 4.3 0.004681 0.039642
GO:0044238 primary metabolic process 38.24% (26/68) 0.69 0.005152 0.039888
GO:0009250 glucan biosynthetic process 5.88% (4/68) 2.51 0.005351 0.040654
GO:0009706 chloroplast inner membrane 2.94% (2/68) 4.16 0.005615 0.042271
GO:0008152 metabolic process 44.12% (30/68) 0.6 0.005863 0.043732
GO:0006633 fatty acid biosynthetic process 4.41% (3/68) 3.02 0.006112 0.044364
GO:0006839 mitochondrial transport 4.41% (3/68) 3.02 0.006112 0.044364
GO:0044391 ribosomal subunit 5.88% (4/68) 2.46 0.006043 0.044663
GO:0000272 polysaccharide catabolic process 2.94% (2/68) 4.07 0.006368 0.045813
GO:0044272 sulfur compound biosynthetic process 7.35% (5/68) 2.08 0.006546 0.046682
GO:0044283 small molecule biosynthetic process 13.24% (9/68) 1.4 0.006635 0.046908
GO:0019144 ADP-sugar diphosphatase activity 1.47% (1/68) 7.07 0.007432 0.049526
GO:0004750 ribulose-phosphate 3-epimerase activity 1.47% (1/68) 7.07 0.007432 0.049526
GO:0004412 homoserine dehydrogenase activity 1.47% (1/68) 7.07 0.007432 0.049526
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 1.47% (1/68) 7.07 0.007432 0.049526
GO:0080041 ADP-ribose pyrophosphohydrolase activity 1.47% (1/68) 7.07 0.007432 0.049526
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_35 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_53 0.024 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_58 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_139 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_144 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_182 0.021 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_214 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_53 0.017 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_118 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_122 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_8 0.029 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_9 0.033 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_19 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_35 0.015 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_96 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_7 0.029 Gene family Compare
Oryza sativa HCCA cluster Cluster_8 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_81 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_131 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_159 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_170 0.028 Gene family Compare
Oryza sativa HCCA cluster Cluster_223 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_242 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_250 0.025 Gene family Compare
Oryza sativa HCCA cluster Cluster_263 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_271 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_272 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_302 0.026 Gene family Compare
Oryza sativa HCCA cluster Cluster_306 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_332 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_90 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_109 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_129 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_194 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_302 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_346 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_404 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_407 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_420 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_458 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_771 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_45 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_83 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_89 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_103 0.022 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_132 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_156 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_161 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_162 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_166 0.02 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_167 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_170 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_210 0.027 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_55 0.022 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_85 0.027 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_96 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_141 0.046 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_143 0.023 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_144 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_149 0.025 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_159 0.021 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_183 0.03 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_195 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_206 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_207 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_261 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_272 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_273 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_304 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_29 0.032 Gene family Compare
Vitis vinifera HCCA cluster Cluster_36 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_38 0.038 Gene family Compare
Vitis vinifera HCCA cluster Cluster_48 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_50 0.028 Gene family Compare
Vitis vinifera HCCA cluster Cluster_54 0.02 Gene family Compare
Vitis vinifera HCCA cluster Cluster_55 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_89 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_104 0.023 Gene family Compare
Vitis vinifera HCCA cluster Cluster_119 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_135 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_145 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_147 0.032 Gene family Compare
Vitis vinifera HCCA cluster Cluster_148 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_149 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_156 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_168 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_191 0.022 Gene family Compare
Vitis vinifera HCCA cluster Cluster_198 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_201 0.033 Gene family Compare
Vitis vinifera HCCA cluster Cluster_209 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_211 0.025 Gene family Compare
Vitis vinifera HCCA cluster Cluster_239 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_257 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_4 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_27 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_46 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_55 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_69 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_75 0.039 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_113 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_143 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_164 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_179 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_185 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_196 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_198 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_200 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_209 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_210 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_221 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_257 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_259 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_285 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_287 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_354 0.016 Gene family Compare
Sequences (68) (download table)

InterPro Domains

GO Terms

Family Terms