Coexpression cluster: Cluster_211 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044271 cellular nitrogen compound biosynthetic process 71.83% (51/71) 3.8 0.0 0.0
GO:0015934 large ribosomal subunit 52.11% (37/71) 6.48 0.0 0.0
GO:0032991 protein-containing complex 80.28% (57/71) 3.88 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 74.65% (53/71) 4.0 0.0 0.0
GO:0043043 peptide biosynthetic process 71.83% (51/71) 5.74 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 71.83% (51/71) 3.65 0.0 0.0
GO:1990904 ribonucleoprotein complex 78.87% (56/71) 5.44 0.0 0.0
GO:0043228 non-membrane-bounded organelle 74.65% (53/71) 4.89 0.0 0.0
GO:0043604 amide biosynthetic process 71.83% (51/71) 5.59 0.0 0.0
GO:0043603 cellular amide metabolic process 71.83% (51/71) 5.25 0.0 0.0
GO:0022625 cytosolic large ribosomal subunit 50.7% (36/71) 6.84 0.0 0.0
GO:0009059 macromolecule biosynthetic process 74.65% (53/71) 3.82 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 74.65% (53/71) 4.89 0.0 0.0
GO:0003735 structural constituent of ribosome 74.65% (53/71) 5.83 0.0 0.0
GO:0005198 structural molecule activity 74.65% (53/71) 5.49 0.0 0.0
GO:0005840 ribosome 71.83% (51/71) 5.89 0.0 0.0
GO:0006412 translation 71.83% (51/71) 5.75 0.0 0.0
GO:0006518 peptide metabolic process 71.83% (51/71) 5.69 0.0 0.0
GO:0044445 cytosolic part 73.24% (52/71) 5.99 0.0 0.0
GO:0044391 ribosomal subunit 69.01% (49/71) 6.02 0.0 0.0
GO:0044267 cellular protein metabolic process 71.83% (51/71) 3.25 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 83.1% (59/71) 2.65 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 78.87% (56/71) 2.75 0.0 0.0
GO:0044446 intracellular organelle part 77.46% (55/71) 2.77 0.0 0.0
GO:0044422 organelle part 77.46% (55/71) 2.77 0.0 0.0
GO:0019538 protein metabolic process 73.24% (52/71) 2.86 0.0 0.0
GO:0043170 macromolecule metabolic process 83.1% (59/71) 2.27 0.0 0.0
GO:0044249 cellular biosynthetic process 74.65% (53/71) 2.49 0.0 0.0
GO:0022626 cytosolic ribosome 30.99% (22/71) 5.46 0.0 0.0
GO:0042254 ribosome biogenesis 26.76% (19/71) 6.12 0.0 0.0
GO:0022613 ribonucleoprotein complex biogenesis 26.76% (19/71) 6.04 0.0 0.0
GO:1901576 organic substance biosynthetic process 74.65% (53/71) 2.37 0.0 0.0
GO:0009058 biosynthetic process 74.65% (53/71) 2.32 0.0 0.0
GO:0006807 nitrogen compound metabolic process 80.28% (57/71) 2.04 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 73.24% (52/71) 2.27 0.0 0.0
GO:0001510 RNA methylation 25.35% (18/71) 5.33 0.0 0.0
GO:0044237 cellular metabolic process 83.1% (59/71) 1.69 0.0 0.0
GO:0044238 primary metabolic process 80.28% (57/71) 1.76 0.0 0.0
GO:0071704 organic substance metabolic process 83.1% (59/71) 1.63 0.0 0.0
GO:0008152 metabolic process 84.51% (60/71) 1.54 0.0 0.0
GO:0044085 cellular component biogenesis 26.76% (19/71) 4.63 0.0 0.0
GO:0044444 cytoplasmic part 90.14% (64/71) 1.33 0.0 0.0
GO:0005737 cytoplasm 59.15% (42/71) 2.26 0.0 0.0
GO:0009451 RNA modification 25.35% (18/71) 4.42 0.0 0.0
GO:0022627 cytosolic small ribosomal subunit 16.9% (12/71) 5.48 0.0 0.0
GO:0009987 cellular process 83.1% (59/71) 1.23 0.0 0.0
GO:0043414 macromolecule methylation 25.35% (18/71) 3.76 0.0 0.0
GO:0032259 methylation 25.35% (18/71) 3.76 0.0 0.0
GO:0015935 small ribosomal subunit 16.9% (12/71) 5.13 0.0 0.0
GO:0005730 nucleolus 16.9% (12/71) 4.01 0.0 0.0
GO:0016070 RNA metabolic process 26.76% (19/71) 2.4 0.0 0.0
GO:0031090 organelle membrane 19.72% (14/71) 2.91 0.0 0.0
GO:0098805 whole membrane 16.9% (12/71) 3.07 0.0 0.0
GO:0043229 intracellular organelle 91.55% (65/71) 0.56 0.0 0.0
GO:0043226 organelle 91.55% (65/71) 0.56 0.0 0.0
GO:0098588 bounding membrane of organelle 16.9% (12/71) 3.03 0.0 0.0
GO:0044428 nuclear part 16.9% (12/71) 3.0 0.0 0.0
GO:0005774 vacuolar membrane 15.49% (11/71) 3.14 0.0 0.0
GO:0044437 vacuolar part 15.49% (11/71) 3.13 0.0 0.0
GO:0005911 cell-cell junction 18.31% (13/71) 2.55 0.0 1e-06
GO:0030054 cell junction 18.31% (13/71) 2.55 0.0 1e-06
GO:0009506 plasmodesma 18.31% (13/71) 2.56 0.0 1e-06
GO:0090304 nucleic acid metabolic process 26.76% (19/71) 1.87 1e-06 3e-06
GO:0043412 macromolecule modification 26.76% (19/71) 1.84 1e-06 4e-06
GO:0006139 nucleobase-containing compound metabolic process 28.17% (20/71) 1.55 7e-06 3.8e-05
GO:0008150 biological_process 95.77% (68/71) 0.33 8e-06 3.9e-05
GO:0044424 intracellular part 92.96% (66/71) 0.37 9e-06 4.5e-05
GO:0071840 cellular component organization or biogenesis 29.58% (21/71) 1.44 1.5e-05 7.1e-05
GO:0016020 membrane 38.03% (27/71) 1.15 2.3e-05 0.000109
GO:0005829 cytosol 19.72% (14/71) 1.86 2.5e-05 0.000115
GO:0046483 heterocycle metabolic process 28.17% (20/71) 1.35 5.8e-05 0.000268
GO:0051029 rRNA transport 2.82% (2/71) 7.27 6.6e-05 0.000296
GO:0006407 rRNA export from nucleus 2.82% (2/71) 7.27 6.6e-05 0.000296
GO:0003674 molecular_function 92.96% (66/71) 0.31 7.7e-05 0.000343
GO:0006414 translational elongation 4.23% (3/71) 5.13 8.6e-05 0.000377
GO:0031970 organelle envelope lumen 2.82% (2/71) 6.78 0.000138 0.00058
GO:0097064 ncRNA export from nucleus 2.82% (2/71) 6.78 0.000138 0.00058
GO:0005758 mitochondrial intermembrane space 2.82% (2/71) 6.78 0.000138 0.00058
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity 4.23% (3/71) 4.85 0.000154 0.00064
GO:0006725 cellular aromatic compound metabolic process 28.17% (20/71) 1.21 0.000218 0.000896
GO:0008320 protein transmembrane transporter activity 4.23% (3/71) 4.53 0.0003 0.001186
GO:0022884 macromolecule transmembrane transporter activity 4.23% (3/71) 4.53 0.0003 0.001186
GO:0044464 cell part 94.37% (67/71) 0.26 0.000295 0.001195
GO:1904680 peptide transmembrane transporter activity 4.23% (3/71) 4.39 0.000398 0.001554
GO:1901360 organic cyclic compound metabolic process 28.17% (20/71) 1.14 0.00041 0.001584
GO:0005773 vacuole 9.86% (7/71) 2.29 0.000562 0.002144
GO:0042887 amide transmembrane transporter activity 4.23% (3/71) 4.11 0.000711 0.002679
GO:0000478 endonucleolytic cleavage involved in rRNA processing 2.82% (2/71) 5.5 0.000879 0.00324
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic 2.82% (2/71) 5.5 0.000879 0.00324
GO:0000469 cleavage involved in rRNA processing 2.82% (2/71) 5.42 0.000987 0.003598
GO:0005743 mitochondrial inner membrane 4.23% (3/71) 3.84 0.001233 0.004444
GO:0090501 RNA phosphodiester bond hydrolysis 2.82% (2/71) 5.07 0.001619 0.005772
GO:0005732 small nucleolar ribonucleoprotein complex 2.82% (2/71) 4.89 0.002069 0.007298
GO:0006626 protein targeting to mitochondrion 4.23% (3/71) 3.49 0.002454 0.008563
GO:0072655 establishment of protein localization to mitochondrion 4.23% (3/71) 3.46 0.002592 0.008855
GO:0070585 protein localization to mitochondrion 4.23% (3/71) 3.46 0.002592 0.008855
GO:0008565 protein transporter activity 4.23% (3/71) 3.38 0.003033 0.010151
GO:0031966 mitochondrial membrane 4.23% (3/71) 3.38 0.003033 0.010151
GO:0019866 organelle inner membrane 4.23% (3/71) 3.15 0.004723 0.015649
GO:0006839 mitochondrial transport 4.23% (3/71) 2.96 0.006888 0.022593
GO:0031974 membrane-enclosed lumen 2.82% (2/71) 3.86 0.008387 0.026452
GO:0070013 intracellular organelle lumen 2.82% (2/71) 3.86 0.008387 0.026452
GO:0043233 organelle lumen 2.82% (2/71) 3.86 0.008387 0.026452
GO:0009853 photorespiration 4.23% (3/71) 2.86 0.008228 0.026722
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.41% (1/71) 6.59 0.010332 0.031672
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.41% (1/71) 6.59 0.010332 0.031672
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.41% (1/71) 6.59 0.010332 0.031672
GO:0043094 cellular metabolic compound salvage 4.23% (3/71) 2.68 0.011685 0.035489
GO:0004550 nucleoside diphosphate kinase activity 1.41% (1/71) 6.27 0.012899 0.038115
GO:0031125 rRNA 3'-end processing 1.41% (1/71) 6.27 0.012899 0.038115
GO:0071493 cellular response to UV-B 1.41% (1/71) 6.27 0.012899 0.038115
GO:0006405 RNA export from nucleus 2.82% (2/71) 3.5 0.013524 0.038571
GO:0051236 establishment of RNA localization 2.82% (2/71) 3.5 0.013524 0.038571
GO:0050657 nucleic acid transport 2.82% (2/71) 3.5 0.013524 0.038571
GO:0050658 RNA transport 2.82% (2/71) 3.5 0.013524 0.038571
GO:0051168 nuclear export 2.82% (2/71) 3.44 0.014679 0.041506
GO:0098799 outer mitochondrial membrane protein complex 1.41% (1/71) 5.78 0.018012 0.048826
GO:0005742 mitochondrial outer membrane translocase complex 1.41% (1/71) 5.78 0.018012 0.048826
GO:0009955 adaxial/abaxial pattern specification 1.41% (1/71) 5.78 0.018012 0.048826
GO:0042274 ribosomal small subunit biogenesis 1.41% (1/71) 5.78 0.018012 0.048826
GO:0015399 primary active transmembrane transporter activity 4.23% (3/71) 2.43 0.01823 0.049011
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_85 0.136 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_182 0.023 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_196 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_43 0.235 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_81 0.014 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_27 0.274 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_60 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_81 0.193 Gene family Compare
Oryza sativa HCCA cluster Cluster_119 0.082 Gene family Compare
Oryza sativa HCCA cluster Cluster_148 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_167 0.034 Gene family Compare
Oryza sativa HCCA cluster Cluster_183 0.035 Gene family Compare
Oryza sativa HCCA cluster Cluster_236 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_256 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_298 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_325 0.021 Gene family Compare
Picea abies HCCA cluster Cluster_5 0.054 Gene family Compare
Picea abies HCCA cluster Cluster_21 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_76 0.064 Gene family Compare
Picea abies HCCA cluster Cluster_189 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_203 0.02 Gene family Compare
Picea abies HCCA cluster Cluster_239 0.075 Gene family Compare
Picea abies HCCA cluster Cluster_276 0.035 Gene family Compare
Picea abies HCCA cluster Cluster_289 0.023 Gene family Compare
Picea abies HCCA cluster Cluster_338 0.017 Gene family Compare
Picea abies HCCA cluster Cluster_429 0.055 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_6 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_21 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_67 0.094 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_109 0.065 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_13 0.031 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_16 0.2 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_100 0.054 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_163 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_240 0.039 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_272 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_26 0.048 Gene family Compare
Vitis vinifera HCCA cluster Cluster_32 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_39 0.025 Gene family Compare
Vitis vinifera HCCA cluster Cluster_61 0.167 Gene family Compare
Vitis vinifera HCCA cluster Cluster_69 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_77 0.104 Gene family Compare
Vitis vinifera HCCA cluster Cluster_114 0.022 Gene family Compare
Vitis vinifera HCCA cluster Cluster_155 0.124 Gene family Compare
Vitis vinifera HCCA cluster Cluster_173 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_54 0.167 Gene family Compare
Zea mays HCCA cluster Cluster_93 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_96 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_140 0.093 Gene family Compare
Zea mays HCCA cluster Cluster_162 0.025 Gene family Compare
Zea mays HCCA cluster Cluster_182 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_203 0.171 Gene family Compare
Zea mays HCCA cluster Cluster_213 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_220 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_259 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_274 0.056 Gene family Compare
Zea mays HCCA cluster Cluster_294 0.024 Gene family Compare
Zea mays HCCA cluster Cluster_333 0.016 Gene family Compare
Sequences (71) (download table)

InterPro Domains

GO Terms

Family Terms