Coexpression cluster: Cluster_7 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 14.98% (34/227) 2.63 0.0 0.0
GO:0003676 nucleic acid binding 15.86% (36/227) 2.0 0.0 0.0
GO:0003723 RNA binding 7.05% (16/227) 3.52 0.0 0.0
GO:0046483 heterocycle metabolic process 9.69% (22/227) 2.55 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 9.69% (22/227) 2.53 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 9.69% (22/227) 2.49 0.0 0.0
GO:0044237 cellular metabolic process 20.26% (46/227) 1.45 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 7.93% (18/227) 2.69 0.0 0.0
GO:0009987 cellular process 22.03% (50/227) 1.29 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 7.93% (18/227) 2.51 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 7.93% (18/227) 2.41 0.0 0.0
GO:0043043 peptide biosynthetic process 5.73% (13/227) 2.98 0.0 1e-06
GO:0003674 molecular_function 50.22% (114/227) 0.63 0.0 1e-06
GO:0043604 amide biosynthetic process 5.73% (13/227) 2.93 0.0 1e-06
GO:0006518 peptide metabolic process 5.73% (13/227) 2.94 0.0 1e-06
GO:1901363 heterocyclic compound binding 23.35% (53/227) 1.12 0.0 1e-06
GO:0097159 organic cyclic compound binding 23.35% (53/227) 1.12 0.0 1e-06
GO:0006807 nitrogen compound metabolic process 18.06% (41/227) 1.33 0.0 1e-06
GO:0043603 cellular amide metabolic process 5.73% (13/227) 2.87 0.0 1e-06
GO:0016070 RNA metabolic process 5.73% (13/227) 2.81 0.0 1e-06
GO:0090304 nucleic acid metabolic process 6.61% (15/227) 2.56 0.0 1e-06
GO:0006520 cellular amino acid metabolic process 3.96% (9/227) 3.63 0.0 1e-06
GO:0005840 ribosome 5.29% (12/227) 2.94 0.0 1e-06
GO:0006412 translation 5.29% (12/227) 2.9 0.0 2e-06
GO:0003735 structural constituent of ribosome 5.29% (12/227) 2.89 0.0 2e-06
GO:0019898 extrinsic component of membrane 2.2% (5/227) 5.39 0.0 2e-06
GO:0043228 non-membrane-bounded organelle 5.29% (12/227) 2.79 0.0 3e-06
GO:0043232 intracellular non-membrane-bounded organelle 5.29% (12/227) 2.79 0.0 3e-06
GO:0005198 structural molecule activity 5.29% (12/227) 2.79 0.0 3e-06
GO:0044249 cellular biosynthetic process 8.37% (19/227) 2.05 0.0 3e-06
GO:1990904 ribonucleoprotein complex 5.29% (12/227) 2.78 0.0 3e-06
GO:0009654 photosystem II oxygen evolving complex 2.2% (5/227) 5.08 0.0 5e-06
GO:0008150 biological_process 33.04% (75/227) 0.79 0.0 6e-06
GO:0044281 small molecule metabolic process 5.73% (13/227) 2.54 0.0 6e-06
GO:0016741 transferase activity, transferring one-carbon groups 4.41% (10/227) 3.04 0.0 6e-06
GO:1901576 organic substance biosynthetic process 8.37% (19/227) 1.98 0.0 6e-06
GO:0009058 biosynthetic process 8.81% (20/227) 1.89 1e-06 7e-06
GO:0008152 metabolic process 24.67% (56/227) 0.96 1e-06 7e-06
GO:0005488 binding 32.6% (74/227) 0.78 1e-06 8e-06
GO:1990204 oxidoreductase complex 2.2% (5/227) 4.78 1e-06 1.1e-05
GO:0034645 cellular macromolecule biosynthetic process 5.73% (13/227) 2.4 1e-06 1.6e-05
GO:0071704 organic substance metabolic process 19.38% (44/227) 1.08 2e-06 1.6e-05
GO:0019752 carboxylic acid metabolic process 4.41% (10/227) 2.79 2e-06 2.4e-05
GO:0043436 oxoacid metabolic process 4.41% (10/227) 2.78 2e-06 2.5e-05
GO:0006082 organic acid metabolic process 4.41% (10/227) 2.77 3e-06 2.5e-05
GO:0009059 macromolecule biosynthetic process 5.73% (13/227) 2.28 4e-06 3.3e-05
GO:0032991 protein-containing complex 7.49% (17/227) 1.91 4e-06 3.4e-05
GO:0034660 ncRNA metabolic process 3.08% (7/227) 3.43 4e-06 3.9e-05
GO:0009523 photosystem II 2.2% (5/227) 4.29 6e-06 5.2e-05
GO:0004812 aminoacyl-tRNA ligase activity 2.2% (5/227) 4.08 1.2e-05 0.000102
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.2% (5/227) 4.08 1.2e-05 0.000102
GO:0043038 amino acid activation 2.2% (5/227) 4.05 1.3e-05 0.000106
GO:0043039 tRNA aminoacylation 2.2% (5/227) 4.05 1.3e-05 0.000106
GO:0044444 cytoplasmic part 5.73% (13/227) 2.1 1.3e-05 0.00011
GO:0044464 cell part 9.25% (21/227) 1.54 1.4e-05 0.000113
GO:0044238 primary metabolic process 17.62% (40/227) 1.0 1.9e-05 0.00015
GO:0140098 catalytic activity, acting on RNA 3.96% (9/227) 2.6 2.1e-05 0.000156
GO:0044424 intracellular part 8.81% (20/227) 1.55 2e-05 0.000158
GO:1901564 organonitrogen compound metabolic process 13.66% (31/227) 1.16 2.3e-05 0.00017
GO:0016874 ligase activity 2.64% (6/227) 3.4 2.4e-05 0.000174
GO:0008168 methyltransferase activity 3.52% (8/227) 2.79 2.4e-05 0.000176
GO:0009521 photosystem 2.2% (5/227) 3.61 5.8e-05 0.000407
GO:0015979 photosynthesis 2.2% (5/227) 3.61 5.8e-05 0.000407
GO:0043170 macromolecule metabolic process 13.66% (31/227) 1.06 8.9e-05 0.000612
GO:0140101 catalytic activity, acting on a tRNA 2.2% (5/227) 3.48 9.1e-05 0.000615
GO:0044436 thylakoid part 2.2% (5/227) 3.46 9.6e-05 0.000643
GO:0019843 rRNA binding 1.32% (3/227) 4.96 0.000116 0.000764
GO:0006399 tRNA metabolic process 2.2% (5/227) 3.23 0.000206 0.001337
GO:0005575 cellular_component 13.22% (30/227) 1.01 0.000218 0.001393
GO:0043229 intracellular organelle 5.29% (12/227) 1.75 0.000288 0.001789
GO:0043226 organelle 5.29% (12/227) 1.75 0.000288 0.001789
GO:1902494 catalytic complex 2.2% (5/227) 3.07 0.000345 0.002112
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.76% (4/227) 3.55 0.000386 0.002329
GO:0005622 intracellular 2.64% (6/227) 2.58 0.000551 0.003281
GO:0008565 protein transporter activity 0.88% (2/227) 5.65 0.000662 0.003894
GO:0006396 RNA processing 2.2% (5/227) 2.8 0.000792 0.004596
GO:0003697 single-stranded DNA binding 0.88% (2/227) 5.46 0.00088 0.004974
GO:0042440 pigment metabolic process 0.88% (2/227) 5.46 0.00088 0.004974
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 1.76% (4/227) 3.14 0.001145 0.00639
GO:0006778 porphyrin-containing compound metabolic process 0.88% (2/227) 5.14 0.001403 0.007736
GO:0006418 tRNA aminoacylation for protein translation 1.32% (3/227) 3.55 0.002154 0.011725
GO:0016853 isomerase activity 1.76% (4/227) 2.84 0.002415 0.012987
GO:0009982 pseudouridine synthase activity 0.88% (2/227) 4.65 0.002796 0.014677
GO:0008173 RNA methyltransferase activity 0.88% (2/227) 4.65 0.002796 0.014677
GO:0051540 metal cluster binding 1.32% (3/227) 3.32 0.003439 0.017635
GO:0051536 iron-sulfur cluster binding 1.32% (3/227) 3.32 0.003439 0.017635
GO:0005509 calcium ion binding 2.2% (5/227) 2.31 0.0036 0.018248
GO:0098796 membrane protein complex 2.2% (5/227) 2.28 0.003864 0.019148
GO:0018130 heterocycle biosynthetic process 2.64% (6/227) 2.02 0.003861 0.019346
GO:0019438 aromatic compound biosynthetic process 2.64% (6/227) 2.0 0.004157 0.019711
GO:0001522 pseudouridine synthesis 0.88% (2/227) 4.37 0.004132 0.019805
GO:0033013 tetrapyrrole metabolic process 0.88% (2/227) 4.37 0.004132 0.019805
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 0.88% (2/227) 4.37 0.004132 0.019805
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 0.44% (1/227) 7.46 0.005681 0.023862
GO:0004109 coproporphyrinogen oxidase activity 0.44% (1/227) 7.46 0.005681 0.023862
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity 0.44% (1/227) 7.46 0.005681 0.023862
GO:0006072 glycerol-3-phosphate metabolic process 0.44% (1/227) 7.46 0.005681 0.023862
GO:0006450 regulation of translational fidelity 0.44% (1/227) 7.46 0.005681 0.023862
GO:0003937 IMP cyclohydrolase activity 0.44% (1/227) 7.46 0.005681 0.023862
GO:0004399 histidinol dehydrogenase activity 0.44% (1/227) 7.46 0.005681 0.023862
GO:0052646 alditol phosphate metabolic process 0.44% (1/227) 7.46 0.005681 0.023862
GO:0046168 glycerol-3-phosphate catabolic process 0.44% (1/227) 7.46 0.005681 0.023862
GO:0016072 rRNA metabolic process 0.88% (2/227) 4.21 0.005156 0.023936
GO:0006364 rRNA processing 0.88% (2/227) 4.21 0.005156 0.023936
GO:0036094 small molecule binding 10.13% (23/227) 0.83 0.005423 0.024912
GO:1901265 nucleoside phosphate binding 9.69% (22/227) 0.84 0.006386 0.026318
GO:0000166 nucleotide binding 9.69% (22/227) 0.84 0.006386 0.026318
GO:1901362 organic cyclic compound biosynthetic process 2.64% (6/227) 1.86 0.006508 0.026573
GO:0016866 intramolecular transferase activity 0.88% (2/227) 4.0 0.006888 0.027867
GO:0050662 coenzyme binding 2.64% (6/227) 1.75 0.009423 0.037777
GO:0019238 cyclohydrolase activity 0.44% (1/227) 6.46 0.011331 0.04164
GO:0016743 carboxyl- or carbamoyltransferase activity 0.44% (1/227) 6.46 0.011331 0.04164
GO:0004392 heme oxygenase (decyclizing) activity 0.44% (1/227) 6.46 0.011331 0.04164
GO:0004827 proline-tRNA ligase activity 0.44% (1/227) 6.46 0.011331 0.04164
GO:0006144 purine nucleobase metabolic process 0.44% (1/227) 6.46 0.011331 0.04164
GO:0006788 heme oxidation 0.44% (1/227) 6.46 0.011331 0.04164
GO:0006433 prolyl-tRNA aminoacylation 0.44% (1/227) 6.46 0.011331 0.04164
GO:0009113 purine nucleobase biosynthetic process 0.44% (1/227) 6.46 0.011331 0.04164
GO:0004637 phosphoribosylamine-glycine ligase activity 0.44% (1/227) 6.46 0.011331 0.04164
GO:0072522 purine-containing compound biosynthetic process 1.32% (3/227) 2.72 0.010785 0.042849
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_21 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_28 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_30 0.07 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_71 0.146 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_132 0.041 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_140 0.048 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_143 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_151 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_164 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_182 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_192 0.047 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_206 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_208 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_214 0.095 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_238 0.03 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_245 0.029 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_265 0.032 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_20 0.016 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_47 0.014 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_85 0.022 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_100 0.02 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_6 0.017 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_8 0.054 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_9 0.034 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_10 0.027 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_35 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_37 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_64 0.019 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_66 0.018 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_84 0.032 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_98 0.024 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_144 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_45 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_126 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_183 0.02 Gene family Compare
Oryza sativa HCCA cluster Cluster_226 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_36 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_64 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_186 0.047 Gene family Compare
Picea abies HCCA cluster Cluster_194 0.015 Gene family Compare
Picea abies HCCA cluster Cluster_205 0.052 Gene family Compare
Picea abies HCCA cluster Cluster_267 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_275 0.025 Gene family Compare
Picea abies HCCA cluster Cluster_332 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_345 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_476 0.018 Gene family Compare
Picea abies HCCA cluster Cluster_478 0.022 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_11 0.034 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_43 0.059 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_108 0.022 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_114 0.014 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_115 0.015 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_165 0.03 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_176 0.019 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_203 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_15 0.032 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_17 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_48 0.023 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_85 0.043 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_92 0.037 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_141 0.064 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_149 0.036 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_183 0.035 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_206 0.041 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_214 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_234 0.164 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_245 0.053 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_291 0.03 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_307 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_2 0.054 Gene family Compare
Vitis vinifera HCCA cluster Cluster_38 0.021 Gene family Compare
Vitis vinifera HCCA cluster Cluster_39 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_55 0.035 Gene family Compare
Vitis vinifera HCCA cluster Cluster_85 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_95 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_104 0.059 Gene family Compare
Vitis vinifera HCCA cluster Cluster_120 0.083 Gene family Compare
Vitis vinifera HCCA cluster Cluster_148 0.118 Gene family Compare
Vitis vinifera HCCA cluster Cluster_171 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_180 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_182 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_203 0.027 Gene family Compare
Vitis vinifera HCCA cluster Cluster_208 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_211 0.091 Gene family Compare
Zea mays HCCA cluster Cluster_45 0.036 Gene family Compare
Zea mays HCCA cluster Cluster_53 0.123 Gene family Compare
Zea mays HCCA cluster Cluster_69 0.034 Gene family Compare
Zea mays HCCA cluster Cluster_75 0.094 Gene family Compare
Zea mays HCCA cluster Cluster_111 0.061 Gene family Compare
Zea mays HCCA cluster Cluster_148 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_156 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_163 0.043 Gene family Compare
Zea mays HCCA cluster Cluster_176 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_209 0.08 Gene family Compare
Zea mays HCCA cluster Cluster_215 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_233 0.045 Gene family Compare
Zea mays HCCA cluster Cluster_258 0.055 Gene family Compare
Zea mays HCCA cluster Cluster_262 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_297 0.043 Gene family Compare
Zea mays HCCA cluster Cluster_313 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_354 0.037 Gene family Compare
Sequences (227) (download table)

InterPro Domains

GO Terms

Family Terms