Coexpression cluster: Cluster_29 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004812 aminoacyl-tRNA ligase activity 4.44% (4/90) 4.67 1.8e-05 0.00073
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.44% (4/90) 4.67 1.8e-05 0.00073
GO:0034660 ncRNA metabolic process 5.56% (5/90) 3.85 2.6e-05 0.000856
GO:0043039 tRNA aminoacylation 4.44% (4/90) 4.71 1.7e-05 0.001106
GO:0043038 amino acid activation 4.44% (4/90) 4.71 1.7e-05 0.001106
GO:0071704 organic substance metabolic process 18.89% (17/90) 1.48 9.8e-05 0.002182
GO:0140101 catalytic activity, acting on a tRNA 4.44% (4/90) 4.1 8.9e-05 0.002214
GO:0008152 metabolic process 20.0% (18/90) 1.44 8.3e-05 0.00238
GO:0006418 tRNA aminoacylation for protein translation 4.44% (4/90) 4.82 1.2e-05 0.002458
GO:0006399 tRNA metabolic process 4.44% (4/90) 3.89 0.000156 0.002837
GO:0044238 primary metabolic process 17.78% (16/90) 1.5 0.000145 0.002891
GO:0008299 isoprenoid biosynthetic process 2.22% (2/90) 6.52 0.000195 0.003251
GO:0006720 isoprenoid metabolic process 2.22% (2/90) 6.29 0.000272 0.004191
GO:0006520 cellular amino acid metabolic process 4.44% (4/90) 3.64 0.000304 0.004345
GO:0017076 purine nucleotide binding 12.22% (11/90) 1.77 0.000373 0.004391
GO:0036094 small molecule binding 13.33% (12/90) 1.69 0.00033 0.004405
GO:0032555 purine ribonucleotide binding 12.22% (11/90) 1.78 0.000356 0.004448
GO:0016874 ligase activity 4.44% (4/90) 3.47 0.000476 0.004536
GO:0097367 carbohydrate derivative binding 12.22% (11/90) 1.74 0.000438 0.004609
GO:0003824 catalytic activity 22.22% (20/90) 1.16 0.000463 0.004627
GO:0032553 ribonucleotide binding 12.22% (11/90) 1.75 0.000426 0.004732
GO:0008610 lipid biosynthetic process 3.33% (3/90) 4.23 0.000556 0.005054
GO:0006629 lipid metabolic process 4.44% (4/90) 3.33 0.000685 0.005954
GO:0043168 anion binding 12.22% (11/90) 1.65 0.000753 0.006023
GO:1901265 nucleoside phosphate binding 12.22% (11/90) 1.63 0.00084 0.006222
GO:0000166 nucleotide binding 12.22% (11/90) 1.63 0.00084 0.006222
GO:0008150 biological_process 24.44% (22/90) 1.03 0.000751 0.00626
GO:0019001 guanyl nucleotide binding 4.44% (4/90) 3.07 0.001357 0.006959
GO:0006082 organic acid metabolic process 4.44% (4/90) 3.07 0.001357 0.006959
GO:0035639 purine ribonucleoside triphosphate binding 11.11% (10/90) 1.65 0.001308 0.007069
GO:0001883 purine nucleoside binding 4.44% (4/90) 3.1 0.001246 0.007119
GO:0032561 guanyl ribonucleotide binding 4.44% (4/90) 3.1 0.001246 0.007119
GO:0032549 ribonucleoside binding 4.44% (4/90) 3.1 0.001246 0.007119
GO:0032550 purine ribonucleoside binding 4.44% (4/90) 3.1 0.001246 0.007119
GO:0005525 GTP binding 4.44% (4/90) 3.1 0.001246 0.007119
GO:0001882 nucleoside binding 4.44% (4/90) 3.09 0.001282 0.007123
GO:0140098 catalytic activity, acting on RNA 4.44% (4/90) 3.03 0.001475 0.007375
GO:0019752 carboxylic acid metabolic process 4.44% (4/90) 3.17 0.001043 0.007449
GO:0043436 oxoacid metabolic process 4.44% (4/90) 3.13 0.001141 0.00787
GO:0043167 ion binding 14.44% (13/90) 1.4 0.001203 0.008021
GO:0016070 RNA metabolic process 5.56% (5/90) 2.55 0.001671 0.00815
GO:0003924 GTPase activity 3.33% (3/90) 3.66 0.001735 0.008263
GO:1901564 organonitrogen compound metabolic process 11.11% (10/90) 1.58 0.001894 0.008811
GO:0044237 cellular metabolic process 14.44% (13/90) 1.3 0.002215 0.01007
GO:0016744 transferase activity, transferring aldehyde or ketonic groups 1.11% (1/90) 8.1 0.003643 0.014871
GO:0016846 carbon-sulfur lyase activity 1.11% (1/90) 8.1 0.003643 0.014871
GO:0019008 molybdopterin synthase complex 1.11% (1/90) 8.1 0.003643 0.014871
GO:0004408 holocytochrome-c synthase activity 1.11% (1/90) 8.1 0.003643 0.014871
GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity 1.11% (1/90) 8.1 0.003643 0.014871
GO:0044281 small molecule metabolic process 5.56% (5/90) 2.08 0.006672 0.026687
GO:0006777 Mo-molybdopterin cofactor biosynthetic process 1.11% (1/90) 7.1 0.007274 0.027976
GO:0019720 Mo-molybdopterin cofactor metabolic process 1.11% (1/90) 7.1 0.007274 0.027976
GO:0003674 molecular_function 32.22% (29/90) 0.62 0.008149 0.03075
GO:0009987 cellular process 17.78% (16/90) 0.91 0.0096 0.035555
GO:0051539 4 iron, 4 sulfur cluster binding 1.11% (1/90) 6.52 0.010891 0.036303
GO:0006721 terpenoid metabolic process 1.11% (1/90) 6.52 0.010891 0.036303
GO:0051189 prosthetic group metabolic process 1.11% (1/90) 6.52 0.010891 0.036303
GO:0043545 molybdopterin cofactor metabolic process 1.11% (1/90) 6.52 0.010891 0.036303
GO:0016114 terpenoid biosynthetic process 1.11% (1/90) 6.52 0.010891 0.036303
GO:1901360 organic cyclic compound metabolic process 7.78% (7/90) 1.51 0.011495 0.037688
GO:0046483 heterocycle metabolic process 7.78% (7/90) 1.54 0.010407 0.037843
GO:0006886 intracellular protein transport 2.22% (2/90) 3.61 0.01174 0.037871
GO:0051540 metal cluster binding 2.22% (2/90) 3.52 0.013282 0.04025
GO:0051536 iron-sulfur cluster binding 2.22% (2/90) 3.52 0.013282 0.04025
GO:0097159 organic cyclic compound binding 13.33% (12/90) 1.04 0.013165 0.041139
GO:1901363 heterocyclic compound binding 13.33% (12/90) 1.04 0.013165 0.041139
GO:0016868 intramolecular transferase activity, phosphotransferases 1.11% (1/90) 6.1 0.014495 0.043269
GO:0006807 nitrogen compound metabolic process 12.22% (11/90) 1.07 0.015144 0.044541
GO:0015833 peptide transport 2.22% (2/90) 3.29 0.017797 0.048758
GO:0051649 establishment of localization in cell 2.22% (2/90) 3.29 0.017797 0.048758
GO:0042886 amide transport 2.22% (2/90) 3.29 0.017797 0.048758
GO:0015031 protein transport 2.22% (2/90) 3.29 0.017797 0.048758
GO:0046907 intracellular transport 2.22% (2/90) 3.29 0.017797 0.048758
GO:0044255 cellular lipid metabolic process 2.22% (2/90) 3.27 0.018401 0.049731
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_107 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_172 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_171 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_111 0.026 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_143 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_153 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_167 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_79 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_128 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_192 0.028 Archaeplastida Compare
Gingko biloba HCCA Cluster_83 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_177 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_17 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_178 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_8 0.028 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_503 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_101 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_161 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_78 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_55 0.022 Archaeplastida Compare
Sequences (90) (download table)

InterPro Domains

GO Terms

Family Terms