Coexpression cluster: Cluster_49 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 13.59% (14/103) 2.34 1e-06 7.6e-05
GO:0003674 molecular_function 42.72% (44/103) 1.03 0.0 0.000113
GO:0006396 RNA processing 5.83% (6/103) 3.79 5e-06 0.000289
GO:0016741 transferase activity, transferring one-carbon groups 5.83% (6/103) 3.83 4e-06 0.000326
GO:0042254 ribosome biogenesis 2.91% (3/103) 6.03 1.1e-05 0.000379
GO:0022613 ribonucleoprotein complex biogenesis 2.91% (3/103) 6.03 1.1e-05 0.000379
GO:0016743 carboxyl- or carbamoyltransferase activity 1.94% (2/103) 7.91 1.7e-05 0.000403
GO:0044085 cellular component biogenesis 2.91% (3/103) 5.91 1.5e-05 0.000441
GO:0003723 RNA binding 5.83% (6/103) 3.48 1.7e-05 0.000443
GO:0005488 binding 29.13% (30/103) 1.17 1.1e-05 0.00052
GO:0097159 organic cyclic compound binding 18.45% (19/103) 1.51 3.1e-05 0.0006
GO:1901363 heterocyclic compound binding 18.45% (19/103) 1.51 3.1e-05 0.0006
GO:0003743 translation initiation factor activity 2.91% (3/103) 5.49 3.8e-05 0.000682
GO:0016070 RNA metabolic process 6.8% (7/103) 2.84 5.7e-05 0.000958
GO:0005852 eukaryotic translation initiation factor 3 complex 1.94% (2/103) 6.91 0.000103 0.001603
GO:0090079 translation regulator activity, nucleic acid binding 2.91% (3/103) 4.85 0.000151 0.001969
GO:0008135 translation factor activity, RNA binding 2.91% (3/103) 4.85 0.000151 0.001969
GO:0045182 translation regulator activity 2.91% (3/103) 4.85 0.000151 0.001969
GO:0032040 small-subunit processome 1.94% (2/103) 6.32 0.000255 0.003146
GO:0006139 nucleobase-containing compound metabolic process 9.71% (10/103) 1.95 0.000272 0.003179
GO:0008152 metabolic process 17.48% (18/103) 1.25 0.000485 0.004728
GO:0006725 cellular aromatic compound metabolic process 9.71% (10/103) 1.86 0.000449 0.004779
GO:1901360 organic cyclic compound metabolic process 9.71% (10/103) 1.83 0.000511 0.004781
GO:0030684 preribosome 1.94% (2/103) 5.91 0.000474 0.004825
GO:0046483 heterocycle metabolic process 9.71% (10/103) 1.86 0.000439 0.00489
GO:0050661 NADP binding 1.94% (2/103) 5.74 0.000608 0.005473
GO:0008168 methyltransferase activity 3.88% (4/103) 3.34 0.000678 0.00588
GO:0044237 cellular metabolic process 14.56% (15/103) 1.31 0.000968 0.008087
GO:0034641 cellular nitrogen compound metabolic process 9.71% (10/103) 1.68 0.001178 0.009507
GO:0008173 RNA methyltransferase activity 1.94% (2/103) 5.21 0.001303 0.010166
GO:0034470 ncRNA processing 2.91% (3/103) 3.76 0.001418 0.010701
GO:0006413 translational initiation 1.94% (2/103) 5.0 0.001745 0.01276
GO:0090304 nucleic acid metabolic process 6.8% (7/103) 1.99 0.002015 0.014285
GO:0008150 biological_process 22.33% (23/103) 0.9 0.002127 0.01464
GO:0044281 small molecule metabolic process 5.83% (6/103) 2.15 0.002396 0.01602
GO:0005634 nucleus 2.91% (3/103) 3.38 0.003021 0.019109
GO:0005515 protein binding 12.62% (13/103) 1.26 0.003021 0.019635
GO:0009987 cellular process 18.45% (19/103) 0.97 0.003329 0.020498
GO:1990904 ribonucleoprotein complex 1.94% (2/103) 4.51 0.003434 0.020601
GO:0046040 IMP metabolic process 0.97% (1/103) 7.91 0.00417 0.023231
GO:0006189 'de novo' IMP biosynthetic process 0.97% (1/103) 7.91 0.00417 0.023231
GO:0006188 IMP biosynthetic process 0.97% (1/103) 7.91 0.00417 0.023231
GO:0044238 primary metabolic process 13.59% (14/103) 1.11 0.00518 0.028189
GO:1901135 carbohydrate derivative metabolic process 2.91% (3/103) 3.06 0.005608 0.029826
GO:0009451 RNA modification 1.94% (2/103) 4.1 0.006064 0.031534
GO:0031369 translation initiation factor binding 0.97% (1/103) 6.91 0.008322 0.031925
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 0.97% (1/103) 6.91 0.008322 0.031925
GO:0009161 ribonucleoside monophosphate metabolic process 0.97% (1/103) 6.91 0.008322 0.031925
GO:0009167 purine ribonucleoside monophosphate metabolic process 0.97% (1/103) 6.91 0.008322 0.031925
GO:0009156 ribonucleoside monophosphate biosynthetic process 0.97% (1/103) 6.91 0.008322 0.031925
GO:0016423 tRNA (guanine) methyltransferase activity 0.97% (1/103) 6.91 0.008322 0.031925
GO:0009127 purine nucleoside monophosphate biosynthetic process 0.97% (1/103) 6.91 0.008322 0.031925
GO:0009126 purine nucleoside monophosphate metabolic process 0.97% (1/103) 6.91 0.008322 0.031925
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 0.97% (1/103) 6.91 0.008322 0.031925
GO:0004345 glucose-6-phosphate dehydrogenase activity 0.97% (1/103) 6.91 0.008322 0.031925
GO:0043231 intracellular membrane-bounded organelle 2.91% (3/103) 2.97 0.006759 0.032279
GO:0043227 membrane-bounded organelle 2.91% (3/103) 2.97 0.006759 0.032279
GO:0016740 transferase activity 8.74% (9/103) 1.42 0.006468 0.032904
GO:0043229 intracellular organelle 3.88% (4/103) 2.31 0.008758 0.033054
GO:0006807 nitrogen compound metabolic process 12.62% (13/103) 1.12 0.006705 0.033381
GO:0043226 organelle 3.88% (4/103) 2.3 0.009072 0.033697
GO:0071704 organic substance metabolic process 13.59% (14/103) 1.01 0.009442 0.034523
GO:0034660 ncRNA metabolic process 2.91% (3/103) 2.92 0.007383 0.034555
GO:0008033 tRNA processing 1.94% (2/103) 3.91 0.007872 0.036117
GO:0036094 small molecule binding 9.71% (10/103) 1.23 0.010303 0.037092
GO:0019693 ribose phosphate metabolic process 1.94% (2/103) 3.55 0.012701 0.041279
GO:0009150 purine ribonucleotide metabolic process 1.94% (2/103) 3.55 0.012701 0.041279
GO:0009259 ribonucleotide metabolic process 1.94% (2/103) 3.55 0.012701 0.041279
GO:0005622 intracellular anatomical structure 3.88% (4/103) 2.14 0.013026 0.041753
GO:0009124 nucleoside monophosphate biosynthetic process 0.97% (1/103) 6.32 0.012457 0.042247
GO:0009123 nucleoside monophosphate metabolic process 0.97% (1/103) 6.32 0.012457 0.042247
GO:0008175 tRNA methyltransferase activity 0.97% (1/103) 6.32 0.012457 0.042247
GO:0005730 nucleolus 0.97% (1/103) 6.32 0.012457 0.042247
GO:0006163 purine nucleotide metabolic process 1.94% (2/103) 3.45 0.014535 0.045349
GO:0071840 cellular component organization or biogenesis 2.91% (3/103) 2.55 0.014849 0.045719
GO:0019752 carboxylic acid metabolic process 2.91% (3/103) 2.56 0.01453 0.045946
GO:0043436 oxoacid metabolic process 2.91% (3/103) 2.53 0.015499 0.0471
GO:0072521 purine-containing compound metabolic process 1.94% (2/103) 3.35 0.016476 0.049426
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_78 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_180 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_250 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_7 0.061 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_81 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_141 0.057 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_199 0.041 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_10 0.058 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_36 0.067 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_63 0.025 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_66 0.034 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_83 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_111 0.035 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_125 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_183 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_75 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_167 0.044 Archaeplastida Compare
Gingko biloba HCCA Cluster_313 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_25 0.028 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_64 0.088 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_98 0.04 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_132 0.041 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_146 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_159 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_10 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_134 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_175 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_176 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_210 0.066 Archaeplastida Compare
Oryza sativa HCCA Cluster_312 0.037 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_1 0.032 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_113 0.035 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_203 0.071 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_229 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.028 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_300 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_237 0.052 Archaeplastida Compare
Picea abies HCCA Cluster_464 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_477 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_484 0.025 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_37 0.048 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_52 0.025 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_145 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_9 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_29 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.071 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_197 0.058 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_255 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_274 0.035 Archaeplastida Compare
Vitis vinifera HCCA Cluster_3 0.055 Archaeplastida Compare
Vitis vinifera HCCA Cluster_161 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_13 0.039 Archaeplastida Compare
Zea mays HCCA Cluster_20 0.043 Archaeplastida Compare
Zea mays HCCA Cluster_59 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_162 0.032 Archaeplastida Compare
Zea mays HCCA Cluster_238 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_318 0.043 Archaeplastida Compare
Zea mays HCCA Cluster_364 0.019 Archaeplastida Compare
Sequences (103) (download table)

InterPro Domains

GO Terms

Family Terms