Coexpression cluster: Cluster_24 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140101 catalytic activity, acting on a tRNA 4.48% (6/134) 4.11 1e-06 0.000157
GO:0006399 tRNA metabolic process 4.48% (6/134) 3.9 3e-06 0.000185
GO:0000166 nucleotide binding 13.43% (18/134) 1.76 6e-06 0.000198
GO:1901265 nucleoside phosphate binding 13.43% (18/134) 1.76 6e-06 0.000198
GO:0034660 ncRNA metabolic process 5.22% (7/134) 3.76 1e-06 0.000209
GO:0036094 small molecule binding 14.18% (19/134) 1.78 3e-06 0.000218
GO:0043168 anion binding 13.43% (18/134) 1.78 5e-06 0.000231
GO:0140098 catalytic activity, acting on RNA 5.22% (7/134) 3.27 9e-06 0.00026
GO:1901363 heterocyclic compound binding 17.16% (23/134) 1.41 1.6e-05 0.000385
GO:0097159 organic cyclic compound binding 17.16% (23/134) 1.41 1.6e-05 0.000385
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.99% (4/134) 4.1 8.7e-05 0.001376
GO:0004812 aminoacyl-tRNA ligase activity 2.99% (4/134) 4.1 8.7e-05 0.001376
GO:0006082 organic acid metabolic process 4.48% (6/134) 3.08 8.2e-05 0.001496
GO:0043038 amino acid activation 2.99% (4/134) 4.13 7.9e-05 0.001566
GO:0043039 tRNA aminoacylation 2.99% (4/134) 4.13 7.9e-05 0.001566
GO:0006520 cellular amino acid metabolic process 3.73% (5/134) 3.39 0.000119 0.00177
GO:0043167 ion binding 14.18% (19/134) 1.37 0.000129 0.001811
GO:0030554 adenyl nucleotide binding 9.7% (13/134) 1.67 0.000243 0.003214
GO:0016070 RNA metabolic process 5.22% (7/134) 2.46 0.000296 0.003714
GO:0017076 purine nucleotide binding 10.45% (14/134) 1.54 0.000334 0.003979
GO:0097367 carbohydrate derivative binding 10.45% (14/134) 1.52 0.000404 0.004184
GO:0032553 ribonucleotide binding 10.45% (14/134) 1.52 0.000391 0.004232
GO:0005488 binding 23.88% (32/134) 0.88 0.000379 0.004296
GO:0019752 carboxylic acid metabolic process 3.73% (5/134) 2.92 0.000544 0.005177
GO:0090304 nucleic acid metabolic process 6.72% (9/134) 1.97 0.000525 0.005202
GO:0043436 oxoacid metabolic process 3.73% (5/134) 2.88 0.000607 0.005559
GO:0005524 ATP binding 8.96% (12/134) 1.57 0.00078 0.006879
GO:0032559 adenyl ribonucleotide binding 8.96% (12/134) 1.55 0.000836 0.007109
GO:0032555 purine ribonucleotide binding 9.7% (13/134) 1.44 0.00103 0.007905
GO:0035639 purine ribonucleoside triphosphate binding 9.7% (13/134) 1.45 0.000968 0.007942
GO:0017150 tRNA dihydrouridine synthase activity 1.49% (2/134) 5.36 0.001026 0.008136
GO:0006418 tRNA aminoacylation for protein translation 2.24% (3/134) 3.83 0.001237 0.009197
GO:0044281 small molecule metabolic process 5.22% (7/134) 1.99 0.001987 0.01433
GO:0016874 ligase activity 2.99% (4/134) 2.9 0.002093 0.014652
GO:0034470 ncRNA processing 2.24% (3/134) 3.38 0.002999 0.020396
GO:0006725 cellular aromatic compound metabolic process 7.46% (10/134) 1.48 0.003328 0.021409
GO:0046483 heterocycle metabolic process 7.46% (10/134) 1.48 0.003258 0.021538
GO:1901360 organic cyclic compound metabolic process 7.46% (10/134) 1.45 0.003738 0.02341
GO:0006426 glycyl-tRNA aminoacylation 0.75% (1/134) 7.53 0.005425 0.029343
GO:0004820 glycine-tRNA ligase activity 0.75% (1/134) 7.53 0.005425 0.029343
GO:0008887 glycerate kinase activity 0.75% (1/134) 7.53 0.005425 0.029343
GO:0031388 organic acid phosphorylation 0.75% (1/134) 7.53 0.005425 0.029343
GO:0008990 rRNA (guanine-N2-)-methyltransferase activity 0.75% (1/134) 7.53 0.005425 0.029343
GO:0003674 molecular_function 30.6% (41/134) 0.55 0.005397 0.032934
GO:0006139 nucleobase-containing compound metabolic process 6.72% (9/134) 1.42 0.006866 0.036314
GO:0050660 flavin adenine dinucleotide binding 1.49% (2/134) 3.83 0.008717 0.045102
GO:0042803 protein homodimerization activity 0.75% (1/134) 6.53 0.01082 0.046822
GO:0031167 rRNA methylation 0.75% (1/134) 6.53 0.01082 0.046822
GO:0008565 obsolete protein transporter activity 0.75% (1/134) 6.53 0.01082 0.046822
GO:0000154 rRNA modification 0.75% (1/134) 6.53 0.01082 0.046822
GO:0017056 structural constituent of nuclear pore 0.75% (1/134) 6.53 0.01082 0.046822
GO:0000774 adenyl-nucleotide exchange factor activity 0.75% (1/134) 6.53 0.01082 0.046822
GO:0016972 thiol oxidase activity 0.75% (1/134) 6.53 0.01082 0.046822
GO:0016435 rRNA (guanine) methyltransferase activity 0.75% (1/134) 6.53 0.01082 0.046822
GO:0043170 macromolecule metabolic process 9.7% (13/134) 1.03 0.011424 0.047701
GO:0006807 nitrogen compound metabolic process 11.19% (15/134) 0.95 0.011227 0.047715
GO:0044237 cellular metabolic process 11.19% (15/134) 0.93 0.012045 0.049428
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_184 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_226 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_7 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_19 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_28 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_36 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_51 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_65 0.025 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_72 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_78 0.035 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_79 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_84 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_89 0.027 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_90 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_102 0.03 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_120 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_133 0.028 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_135 0.027 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_137 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_140 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_141 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_159 0.032 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_163 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_192 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_198 0.028 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_208 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_64 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_17 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_59 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_8 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_67 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_14 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_270 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_14 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_55 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_273 0.028 Archaeplastida Compare
Sequences (134) (download table)

InterPro Domains

GO Terms

Family Terms