Coexpression cluster: Cluster_171 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 10.0% (7/70) 3.4 5e-06 0.000944
GO:0016740 transferase activity 14.29% (10/70) 2.13 8.6e-05 0.001988
GO:0006725 cellular aromatic compound metabolic process 12.86% (9/70) 2.26 0.000102 0.002136
GO:0097159 organic cyclic compound binding 20.0% (14/70) 1.63 0.000135 0.002173
GO:1901363 heterocyclic compound binding 20.0% (14/70) 1.63 0.000135 0.002173
GO:0034062 5'-3' RNA polymerase activity 4.29% (3/70) 5.14 8.4e-05 0.002188
GO:0097747 RNA polymerase activity 4.29% (3/70) 5.14 8.4e-05 0.002188
GO:1901360 organic cyclic compound metabolic process 12.86% (9/70) 2.24 0.000116 0.0022
GO:0016779 nucleotidyltransferase activity 5.71% (4/70) 4.2 6.8e-05 0.002384
GO:0006351 transcription, DNA-templated 4.29% (3/70) 4.76 0.000185 0.002418
GO:0097659 nucleic acid-templated transcription 4.29% (3/70) 4.76 0.000185 0.002418
GO:0044237 cellular metabolic process 20.0% (14/70) 1.77 4.6e-05 0.002427
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.29% (3/70) 5.29 6.1e-05 0.002538
GO:0006807 nitrogen compound metabolic process 18.57% (13/70) 1.68 0.000174 0.002603
GO:0009987 cellular process 24.29% (17/70) 1.36 0.000213 0.002615
GO:0090304 nucleic acid metabolic process 11.43% (8/70) 2.74 2.6e-05 0.002745
GO:0140098 catalytic activity, acting on RNA 7.14% (5/70) 3.72 4e-05 0.00277
GO:0043170 macromolecule metabolic process 15.71% (11/70) 1.73 0.000435 0.004135
GO:0044238 primary metabolic process 18.57% (13/70) 1.56 0.000381 0.004187
GO:0008150 biological_process 27.14% (19/70) 1.18 0.000421 0.00419
GO:0006139 nucleobase-containing compound metabolic process 11.43% (8/70) 2.18 0.000365 0.004244
GO:0003824 catalytic activity 24.29% (17/70) 1.29 0.000406 0.004245
GO:0008152 metabolic process 20.0% (14/70) 1.44 0.000497 0.004514
GO:0046483 heterocycle metabolic process 11.43% (8/70) 2.1 0.000547 0.004761
GO:0071704 organic substance metabolic process 18.57% (13/70) 1.46 0.000743 0.00621
GO:0006457 protein folding 2.86% (2/70) 5.46 0.000926 0.007167
GO:0032774 RNA biosynthetic process 4.29% (3/70) 3.98 0.000917 0.00737
GO:0034641 cellular nitrogen compound metabolic process 11.43% (8/70) 1.91 0.00126 0.009402
GO:0003674 molecular_function 37.14% (26/70) 0.83 0.001347 0.009709
GO:0016071 mRNA metabolic process 2.86% (2/70) 5.0 0.001763 0.01228
GO:0006520 cellular amino acid metabolic process 4.29% (3/70) 3.59 0.002013 0.013147
GO:0044260 cellular macromolecule metabolic process 11.43% (8/70) 1.81 0.001981 0.013353
GO:0008168 methyltransferase activity 4.29% (3/70) 3.48 0.002503 0.015854
GO:0003676 nucleic acid binding 10.0% (7/70) 1.9 0.002652 0.016304
GO:0016741 transferase activity, transferring one-carbon groups 4.29% (3/70) 3.39 0.002978 0.016378
GO:0016556 mRNA modification 1.43% (1/70) 8.46 0.002834 0.016452
GO:0080009 mRNA methylation 1.43% (1/70) 8.46 0.002834 0.016452
GO:0016772 transferase activity, transferring phosphorus-containing groups 8.57% (6/70) 2.08 0.002931 0.016556
GO:0006370 7-methylguanosine mRNA capping 1.43% (1/70) 7.46 0.00566 0.024643
GO:0008192 RNA guanylyltransferase activity 1.43% (1/70) 7.46 0.00566 0.024643
GO:0000439 transcription factor TFIIH core complex 1.43% (1/70) 7.46 0.00566 0.024643
GO:0009452 7-methylguanosine RNA capping 1.43% (1/70) 7.46 0.00566 0.024643
GO:0070568 guanylyltransferase activity 1.43% (1/70) 7.46 0.00566 0.024643
GO:0004484 mRNA guanylyltransferase activity 1.43% (1/70) 7.46 0.00566 0.024643
GO:0036260 RNA capping 1.43% (1/70) 7.46 0.00566 0.024643
GO:1901362 organic cyclic compound biosynthetic process 5.71% (4/70) 2.45 0.006217 0.025985
GO:0006082 organic acid metabolic process 4.29% (3/70) 3.01 0.006159 0.026271
GO:0140102 catalytic activity, acting on a rRNA 1.43% (1/70) 6.88 0.008478 0.026846
GO:0008318 protein prenyltransferase activity 1.43% (1/70) 6.88 0.008478 0.026846
GO:0004659 prenyltransferase activity 1.43% (1/70) 6.88 0.008478 0.026846
GO:0018342 protein prenylation 1.43% (1/70) 6.88 0.008478 0.026846
GO:0097354 prenylation 1.43% (1/70) 6.88 0.008478 0.026846
GO:0004664 prephenate dehydratase activity 1.43% (1/70) 6.88 0.008478 0.026846
GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process 1.43% (1/70) 6.88 0.008478 0.026846
GO:0009094 L-phenylalanine biosynthetic process 1.43% (1/70) 6.88 0.008478 0.026846
GO:0008649 rRNA methyltransferase activity 1.43% (1/70) 6.88 0.008478 0.026846
GO:0051171 regulation of nitrogen compound metabolic process 4.29% (3/70) 2.79 0.00942 0.026971
GO:0080090 regulation of primary metabolic process 4.29% (3/70) 2.79 0.00942 0.026971
GO:0019752 carboxylic acid metabolic process 4.29% (3/70) 3.12 0.005057 0.027101
GO:0009889 regulation of biosynthetic process 4.29% (3/70) 2.8 0.009254 0.027241
GO:0031326 regulation of cellular biosynthetic process 4.29% (3/70) 2.8 0.009254 0.027241
GO:0010556 regulation of macromolecule biosynthetic process 4.29% (3/70) 2.8 0.009254 0.027241
GO:0010468 regulation of gene expression 4.29% (3/70) 2.8 0.009254 0.027241
GO:2000112 regulation of cellular macromolecule biosynthetic process 4.29% (3/70) 2.8 0.009254 0.027241
GO:0019438 aromatic compound biosynthetic process 5.71% (4/70) 2.52 0.005264 0.027503
GO:0043436 oxoacid metabolic process 4.29% (3/70) 3.08 0.00541 0.027577
GO:0005488 binding 24.29% (17/70) 0.91 0.006909 0.028315
GO:0003677 DNA binding 5.71% (4/70) 2.39 0.007185 0.028879
GO:0019219 regulation of nucleobase-containing compound metabolic process 4.29% (3/70) 2.87 0.008139 0.029844
GO:0051252 regulation of RNA metabolic process 4.29% (3/70) 2.87 0.008139 0.029844
GO:1903506 regulation of nucleic acid-templated transcription 4.29% (3/70) 2.87 0.008139 0.029844
GO:0006355 regulation of transcription, DNA-templated 4.29% (3/70) 2.87 0.008139 0.029844
GO:2001141 regulation of RNA biosynthetic process 4.29% (3/70) 2.87 0.008139 0.029844
GO:0060255 regulation of macromolecule metabolic process 4.29% (3/70) 2.72 0.010813 0.030132
GO:0031323 regulation of cellular metabolic process 4.29% (3/70) 2.72 0.010813 0.030132
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 1.43% (1/70) 6.46 0.011288 0.030245
GO:0006558 L-phenylalanine metabolic process 1.43% (1/70) 6.46 0.011288 0.030245
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process 1.43% (1/70) 6.46 0.011288 0.030245
GO:0035639 purine ribonucleoside triphosphate binding 10.0% (7/70) 1.5 0.011835 0.030919
GO:0019222 regulation of metabolic process 4.29% (3/70) 2.67 0.011741 0.031061
GO:0032555 purine ribonucleotide binding 10.0% (7/70) 1.49 0.012253 0.031615
GO:0034645 cellular macromolecule biosynthetic process 4.29% (3/70) 2.63 0.012713 0.032012
GO:0017076 purine nucleotide binding 10.0% (7/70) 1.48 0.012609 0.032138
GO:0032553 ribonucleotide binding 10.0% (7/70) 1.46 0.013647 0.033954
GO:0097367 carbohydrate derivative binding 10.0% (7/70) 1.45 0.013877 0.034121
GO:0001510 RNA methylation 1.43% (1/70) 6.14 0.01409 0.034242
GO:0005634 nucleus 2.86% (2/70) 3.35 0.016434 0.039478
GO:0006289 nucleotide-excision repair 1.43% (1/70) 5.88 0.016884 0.03965
GO:0032040 small-subunit processome 1.43% (1/70) 5.88 0.016884 0.03965
GO:0043168 anion binding 10.0% (7/70) 1.36 0.019186 0.043586
GO:0032559 adenyl ribonucleotide binding 8.57% (6/70) 1.49 0.019817 0.043598
GO:0030554 adenyl nucleotide binding 8.57% (6/70) 1.49 0.020049 0.043647
GO:1901265 nucleoside phosphate binding 10.0% (7/70) 1.34 0.02048 0.043678
GO:0000166 nucleotide binding 10.0% (7/70) 1.34 0.02048 0.043678
GO:0090575 RNA polymerase II transcription regulator complex 1.43% (1/70) 5.66 0.019671 0.043736
GO:0009073 aromatic amino acid family biosynthetic process 1.43% (1/70) 5.66 0.019671 0.043736
GO:0005524 ATP binding 8.57% (6/70) 1.5 0.019135 0.043948
GO:0009059 macromolecule biosynthetic process 4.29% (3/70) 2.41 0.018995 0.04411
GO:0030684 preribosome 1.43% (1/70) 5.46 0.02245 0.04692
GO:0034654 nucleobase-containing compound biosynthetic process 4.29% (3/70) 2.32 0.0224 0.047289
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_199 0.02 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_125 0.028 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_15 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_145 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_301 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_64 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_134 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_4 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_497 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_37 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_29 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_354 0.025 Archaeplastida Compare
Sequences (70) (download table)

InterPro Domains

GO Terms

Family Terms