Coexpression cluster: Cluster_145 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901663 quinone biosynthetic process 3.23% (2/62) 9.33 2e-06 8.8e-05
GO:0006744 ubiquinone biosynthetic process 3.23% (2/62) 9.33 2e-06 8.8e-05
GO:0006743 ubiquinone metabolic process 3.23% (2/62) 9.33 2e-06 8.8e-05
GO:0042181 ketone biosynthetic process 3.23% (2/62) 9.33 2e-06 8.8e-05
GO:1901661 quinone metabolic process 3.23% (2/62) 9.33 2e-06 8.8e-05
GO:0044427 chromosomal part 6.45% (4/62) 5.16 5e-06 0.000154
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity 3.23% (2/62) 8.75 7e-06 0.000164
GO:0016426 tRNA (adenine) methyltransferase activity 3.23% (2/62) 8.75 7e-06 0.000164
GO:0043527 tRNA methyltransferase complex 3.23% (2/62) 8.33 1.4e-05 0.000187
GO:0030488 tRNA methylation 3.23% (2/62) 8.33 1.4e-05 0.000187
GO:0034708 methyltransferase complex 3.23% (2/62) 8.33 1.4e-05 0.000187
GO:0031515 tRNA (m1A) methyltransferase complex 3.23% (2/62) 8.33 1.4e-05 0.000187
GO:0044422 organelle part 9.68% (6/62) 3.59 1.1e-05 0.000196
GO:0044446 intracellular organelle part 9.68% (6/62) 3.59 1.1e-05 0.000196
GO:0032991 protein-containing complex 12.9% (8/62) 2.7 3.1e-05 0.00038
GO:0042180 cellular ketone metabolic process 3.23% (2/62) 7.75 3.5e-05 0.000385
GO:0001510 RNA methylation 3.23% (2/62) 7.75 3.5e-05 0.000385
GO:1990234 transferase complex 4.84% (3/62) 5.39 5.1e-05 0.000501
GO:0008175 tRNA methyltransferase activity 3.23% (2/62) 7.52 5e-05 0.000509
GO:0032993 protein-DNA complex 4.84% (3/62) 5.27 6.6e-05 0.000583
GO:0000786 nucleosome 4.84% (3/62) 5.27 6.6e-05 0.000583
GO:0044815 DNA packaging complex 4.84% (3/62) 5.24 7e-05 0.000591
GO:0044424 intracellular part 14.52% (9/62) 2.27 9.5e-05 0.000768
GO:0044464 cell part 14.52% (9/62) 2.19 0.000146 0.001127
GO:0006400 tRNA modification 3.23% (2/62) 6.52 0.000213 0.001516
GO:0008173 RNA methyltransferase activity 3.23% (2/62) 6.52 0.000213 0.001516
GO:0043414 macromolecule methylation 3.23% (2/62) 6.42 0.000246 0.001682
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 3.23% (2/62) 6.08 0.000398 0.002632
GO:0032259 methylation 3.23% (2/62) 5.87 0.000536 0.003422
GO:1902494 catalytic complex 4.84% (3/62) 4.2 0.000596 0.003674
GO:0051726 regulation of cell cycle 3.23% (2/62) 5.63 0.000752 0.004486
GO:0009451 RNA modification 3.23% (2/62) 5.29 0.001213 0.007011
GO:0016070 RNA metabolic process 6.45% (4/62) 2.98 0.001673 0.009377
GO:0008033 tRNA processing 3.23% (2/62) 4.97 0.001868 0.010166
GO:0003677 DNA binding 9.68% (6/62) 2.19 0.001988 0.010506
GO:0043565 sequence-specific DNA binding 4.84% (3/62) 3.49 0.002461 0.012645
GO:0006733 oxidoreduction coenzyme metabolic process 3.23% (2/62) 4.69 0.002766 0.013831
GO:0030896 checkpoint clamp complex 1.61% (1/62) 8.33 0.003101 0.015098
GO:0044450 microtubule organizing center part 1.61% (1/62) 7.75 0.004648 0.017915
GO:0034629 cellular protein-containing complex localization 1.61% (1/62) 7.75 0.004648 0.017915
GO:0000077 DNA damage checkpoint 1.61% (1/62) 7.75 0.004648 0.017915
GO:0000930 gamma-tubulin complex 1.61% (1/62) 7.75 0.004648 0.017915
GO:0031503 protein-containing complex localization 1.61% (1/62) 7.75 0.004648 0.017915
GO:0008274 gamma-tubulin ring complex 1.61% (1/62) 7.75 0.004648 0.017915
GO:0000931 gamma-tubulin large complex 1.61% (1/62) 7.75 0.004648 0.017915
GO:0031570 DNA integrity checkpoint 1.61% (1/62) 7.75 0.004648 0.017915
GO:0033566 gamma-tubulin complex localization 1.61% (1/62) 7.75 0.004648 0.017915
GO:0034470 ncRNA processing 3.23% (2/62) 4.4 0.004087 0.019389
GO:0090304 nucleic acid metabolic process 6.45% (4/62) 2.53 0.005171 0.019524
GO:0009108 coenzyme biosynthetic process 3.23% (2/62) 4.16 0.005647 0.020894
GO:0000075 cell cycle checkpoint 1.61% (1/62) 7.33 0.006193 0.022464
GO:0005575 cellular_component 16.13% (10/62) 1.29 0.006927 0.023731
GO:0140101 catalytic activity, acting on a tRNA 3.23% (2/62) 4.03 0.00676 0.024049
GO:0006732 coenzyme metabolic process 3.23% (2/62) 4.01 0.006926 0.024176
GO:0051188 cofactor biosynthetic process 3.23% (2/62) 3.91 0.007963 0.026786
GO:0006399 tRNA metabolic process 3.23% (2/62) 3.78 0.009448 0.030136
GO:0044444 cytoplasmic part 6.45% (4/62) 2.28 0.009434 0.03062
GO:0030880 RNA polymerase complex 1.61% (1/62) 6.75 0.009275 0.030641
GO:0051186 cofactor metabolic process 3.23% (2/62) 3.56 0.012535 0.03865
GO:0044454 nuclear chromosome part 1.61% (1/62) 6.33 0.012348 0.038718
GO:0006139 nucleobase-containing compound metabolic process 6.45% (4/62) 2.11 0.013909 0.039586
GO:0032774 RNA biosynthetic process 3.23% (2/62) 3.52 0.013199 0.040029
GO:0045786 negative regulation of cell cycle 1.61% (1/62) 6.16 0.013881 0.040124
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.61% (1/62) 6.16 0.013881 0.040124
GO:0019900 kinase binding 1.61% (1/62) 5.87 0.016939 0.040699
GO:0043549 regulation of kinase activity 1.61% (1/62) 5.87 0.016939 0.040699
GO:0045859 regulation of protein kinase activity 1.61% (1/62) 5.87 0.016939 0.040699
GO:0042325 regulation of phosphorylation 1.61% (1/62) 5.87 0.016939 0.040699
GO:1904029 regulation of cyclin-dependent protein kinase activity 1.61% (1/62) 5.87 0.016939 0.040699
GO:0019901 protein kinase binding 1.61% (1/62) 5.87 0.016939 0.040699
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 1.61% (1/62) 5.87 0.016939 0.040699
GO:0051338 regulation of transferase activity 1.61% (1/62) 5.87 0.016939 0.040699
GO:0001932 regulation of protein phosphorylation 1.61% (1/62) 5.87 0.016939 0.040699
GO:0071900 regulation of protein serine/threonine kinase activity 1.61% (1/62) 5.87 0.016939 0.040699
GO:0034660 ncRNA metabolic process 3.23% (2/62) 3.5 0.013649 0.040728
GO:0043233 organelle lumen 1.61% (1/62) 5.75 0.018465 0.042701
GO:0070013 intracellular organelle lumen 1.61% (1/62) 5.75 0.018465 0.042701
GO:0031974 membrane-enclosed lumen 1.61% (1/62) 5.75 0.018465 0.042701
GO:0005759 mitochondrial matrix 1.61% (1/62) 6.01 0.015411 0.043198
GO:0046483 heterocycle metabolic process 6.45% (4/62) 1.96 0.019453 0.044429
GO:0006396 RNA processing 3.23% (2/62) 3.35 0.016491 0.045536
GO:0006725 cellular aromatic compound metabolic process 6.45% (4/62) 1.94 0.020327 0.045861
GO:1901360 organic cyclic compound metabolic process 6.45% (4/62) 1.91 0.022149 0.049369
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_15 0.025 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_62 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_73 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_85 0.018 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_90 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_97 0.033 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_152 0.038 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_196 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_204 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_208 0.015 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_94 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_191 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_199 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_256 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_441 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_5 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_136 0.037 Gene family Compare
Picea abies HCCA cluster Cluster_180 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_243 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_246 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_289 0.022 Gene family Compare
Picea abies HCCA cluster Cluster_338 0.024 Gene family Compare
Picea abies HCCA cluster Cluster_414 0.019 Gene family Compare
Picea abies HCCA cluster Cluster_457 0.016 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_67 0.022 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_110 0.017 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_120 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_47 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_191 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_229 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_240 0.018 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_255 0.02 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_272 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_295 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_42 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_69 0.022 Gene family Compare
Vitis vinifera HCCA cluster Cluster_89 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_122 0.023 Gene family Compare
Vitis vinifera HCCA cluster Cluster_197 0.016 Gene family Compare
Vitis vinifera HCCA cluster Cluster_229 0.019 Gene family Compare
Vitis vinifera HCCA cluster Cluster_236 0.02 Gene family Compare
Vitis vinifera HCCA cluster Cluster_400 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_56 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_62 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_106 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_109 0.046 Gene family Compare
Zea mays HCCA cluster Cluster_131 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_162 0.024 Gene family Compare
Zea mays HCCA cluster Cluster_193 0.026 Gene family Compare
Zea mays HCCA cluster Cluster_288 0.039 Gene family Compare
Zea mays HCCA cluster Cluster_294 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_333 0.015 Gene family Compare
Sequences (62) (download table)

InterPro Domains

GO Terms

Family Terms