Coexpression cluster: Cluster_80 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009059 macromolecule biosynthetic process 85.37% (70/82) 4.01 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 85.37% (70/82) 5.61 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 80.49% (66/82) 3.07 0.0 0.0
GO:0006354 DNA-templated transcription, elongation 80.49% (66/82) 7.47 0.0 0.0
GO:0018130 heterocycle biosynthetic process 80.49% (66/82) 4.25 0.0 0.0
GO:0016070 RNA metabolic process 80.49% (66/82) 3.99 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 85.37% (70/82) 4.05 0.0 0.0
GO:0044249 cellular biosynthetic process 85.37% (70/82) 2.69 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 85.37% (70/82) 2.87 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 80.49% (66/82) 4.79 0.0 0.0
GO:0015979 photosynthesis 84.15% (69/82) 6.93 0.0 0.0
GO:0044435 plastid part 65.85% (54/82) 3.86 0.0 0.0
GO:0009536 plastid 91.46% (75/82) 2.71 0.0 0.0
GO:0009507 chloroplast 91.46% (75/82) 2.74 0.0 0.0
GO:0090304 nucleic acid metabolic process 80.49% (66/82) 3.46 0.0 0.0
GO:0046483 heterocycle metabolic process 80.49% (66/82) 2.87 0.0 0.0
GO:0032774 RNA biosynthetic process 80.49% (66/82) 6.18 0.0 0.0
GO:0019684 photosynthesis, light reaction 42.68% (35/82) 6.3 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 80.49% (66/82) 3.96 0.0 0.0
GO:1901362 organic cyclic compound biosynthetic process 80.49% (66/82) 3.74 0.0 0.0
GO:1901576 organic substance biosynthetic process 85.37% (70/82) 2.56 0.0 0.0
GO:0009058 biosynthetic process 85.37% (70/82) 2.52 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 80.49% (66/82) 2.73 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 80.49% (66/82) 2.66 0.0 0.0
GO:0044434 chloroplast part 58.54% (48/82) 3.73 0.0 0.0
GO:0043170 macromolecule metabolic process 85.37% (70/82) 2.31 0.0 0.0
GO:0032991 protein-containing complex 58.54% (48/82) 3.42 0.0 0.0
GO:0006807 nitrogen compound metabolic process 85.37% (70/82) 2.13 0.0 0.0
GO:0044436 thylakoid part 37.8% (31/82) 4.76 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 34.15% (28/82) 4.89 0.0 0.0
GO:0055035 plastid thylakoid membrane 34.15% (28/82) 4.88 0.0 0.0
GO:0042651 thylakoid membrane 34.15% (28/82) 4.83 0.0 0.0
GO:0034357 photosynthetic membrane 34.15% (28/82) 4.83 0.0 0.0
GO:0044237 cellular metabolic process 89.02% (73/82) 1.79 0.0 0.0
GO:0044238 primary metabolic process 85.37% (70/82) 1.85 0.0 0.0
GO:0009534 chloroplast thylakoid 29.27% (24/82) 5.24 0.0 0.0
GO:0031976 plastid thylakoid 29.27% (24/82) 5.24 0.0 0.0
GO:0044444 cytoplasmic part 96.34% (79/82) 1.43 0.0 0.0
GO:0044446 intracellular organelle part 65.85% (54/82) 2.54 0.0 0.0
GO:0044422 organelle part 65.85% (54/82) 2.54 0.0 0.0
GO:0000312 plastid small ribosomal subunit 15.85% (13/82) 8.0 0.0 0.0
GO:0009579 thylakoid 31.71% (26/82) 4.73 0.0 0.0
GO:0008152 metabolic process 89.02% (73/82) 1.61 0.0 0.0
GO:0071704 organic substance metabolic process 85.37% (70/82) 1.67 0.0 0.0
GO:0000314 organellar small ribosomal subunit 15.85% (13/82) 7.44 0.0 0.0
GO:0010207 photosystem II assembly 24.39% (20/82) 5.24 0.0 0.0
GO:0044391 ribosomal subunit 26.83% (22/82) 4.65 0.0 0.0
GO:0009987 cellular process 89.02% (73/82) 1.33 0.0 0.0
GO:0031984 organelle subcompartment 29.27% (24/82) 4.14 0.0 0.0
GO:0006412 translation 26.83% (22/82) 4.33 0.0 0.0
GO:0043043 peptide biosynthetic process 26.83% (22/82) 4.32 0.0 0.0
GO:0006518 peptide metabolic process 26.83% (22/82) 4.27 0.0 0.0
GO:0043604 amide biosynthetic process 26.83% (22/82) 4.17 0.0 0.0
GO:0003735 structural constituent of ribosome 25.61% (21/82) 4.29 0.0 0.0
GO:1990904 ribonucleoprotein complex 28.05% (23/82) 3.95 0.0 0.0
GO:0098796 membrane protein complex 24.39% (20/82) 4.16 0.0 0.0
GO:0043603 cellular amide metabolic process 26.83% (22/82) 3.83 0.0 0.0
GO:0005198 structural molecule activity 25.61% (21/82) 3.95 0.0 0.0
GO:0034622 cellular protein-containing complex assembly 25.61% (21/82) 3.94 0.0 0.0
GO:0000311 plastid large ribosomal subunit 10.98% (9/82) 7.47 0.0 0.0
GO:0065003 protein-containing complex assembly 25.61% (21/82) 3.88 0.0 0.0
GO:0043933 protein-containing complex subunit organization 25.61% (21/82) 3.85 0.0 0.0
GO:0009570 chloroplast stroma 26.83% (22/82) 3.64 0.0 0.0
GO:0009532 plastid stroma 26.83% (22/82) 3.64 0.0 0.0
GO:0000315 organellar large ribosomal subunit 10.98% (9/82) 7.16 0.0 0.0
GO:0015935 small ribosomal subunit 15.85% (13/82) 5.04 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 35.37% (29/82) 2.63 0.0 0.0
GO:0055114 oxidation-reduction process 20.73% (17/82) 3.87 0.0 0.0
GO:0022607 cellular component assembly 25.61% (21/82) 3.28 0.0 0.0
GO:0046906 tetrapyrrole binding 10.98% (9/82) 6.0 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 96.34% (79/82) 0.65 0.0 0.0
GO:0043227 membrane-bounded organelle 96.34% (79/82) 0.65 0.0 0.0
GO:0043229 intracellular organelle 96.34% (79/82) 0.63 0.0 0.0
GO:0043226 organelle 96.34% (79/82) 0.63 0.0 0.0
GO:0010287 plastoglobule 10.98% (9/82) 5.47 0.0 0.0
GO:0044425 membrane part 24.39% (20/82) 2.89 0.0 0.0
GO:0015980 energy derivation by oxidation of organic compounds 10.98% (9/82) 5.29 0.0 0.0
GO:0045333 cellular respiration 10.98% (9/82) 5.29 0.0 0.0
GO:0009941 chloroplast envelope 19.51% (16/82) 3.32 0.0 0.0
GO:0016651 oxidoreductase activity, acting on NAD(P)H 10.98% (9/82) 5.13 0.0 0.0
GO:0016168 chlorophyll binding 8.54% (7/82) 6.19 0.0 0.0
GO:0009526 plastid envelope 19.51% (16/82) 3.3 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 26.83% (22/82) 2.53 0.0 0.0
GO:0009767 photosynthetic electron transport chain 9.76% (8/82) 5.36 0.0 0.0
GO:0048037 cofactor binding 10.98% (9/82) 4.85 0.0 0.0
GO:0031975 envelope 19.51% (16/82) 3.15 0.0 0.0
GO:0031967 organelle envelope 19.51% (16/82) 3.15 0.0 0.0
GO:0009521 photosystem 7.32% (6/82) 6.11 0.0 0.0
GO:0022900 electron transport chain 9.76% (8/82) 4.88 0.0 0.0
GO:0009512 cytochrome b6f complex 4.88% (4/82) 8.06 0.0 0.0
GO:0009765 photosynthesis, light harvesting 6.1% (5/82) 6.9 0.0 0.0
GO:0009769 photosynthesis, light harvesting in photosystem II 4.88% (4/82) 7.8 0.0 0.0
GO:0015934 large ribosomal subunit 10.98% (9/82) 4.23 0.0 0.0
GO:0003959 NADPH dehydrogenase activity 4.88% (4/82) 7.58 0.0 0.0
GO:0009523 photosystem II 6.1% (5/82) 6.18 0.0 0.0
GO:0044424 intracellular part 96.34% (79/82) 0.42 0.0 0.0
GO:0044267 cellular protein metabolic process 28.05% (23/82) 1.89 0.0 0.0
GO:0098807 chloroplast thylakoid membrane protein complex 6.1% (5/82) 5.75 0.0 0.0
GO:0016020 membrane 42.68% (35/82) 1.31 0.0 0.0
GO:0009539 photosystem II reaction center 3.66% (3/82) 7.97 0.0 1e-06
GO:0009295 nucleoid 6.1% (5/82) 5.12 0.0 2e-06
GO:1901564 organonitrogen compound metabolic process 37.8% (31/82) 1.32 0.0 2e-06
GO:0009544 chloroplast ATP synthase complex 3.66% (3/82) 7.38 1e-06 3e-06
GO:0019538 protein metabolic process 29.27% (24/82) 1.53 1e-06 6e-06
GO:0070069 cytochrome complex 4.88% (4/82) 5.63 1e-06 6e-06
GO:0008150 biological_process 95.12% (78/82) 0.32 4e-06 1.9e-05
GO:0009538 photosystem I reaction center 3.66% (3/82) 6.51 4e-06 2e-05
GO:0044464 cell part 96.34% (79/82) 0.29 7e-06 3.2e-05
GO:0009153 purine deoxyribonucleotide biosynthetic process 2.44% (2/82) 8.38 9e-06 3.9e-05
GO:0009151 purine deoxyribonucleotide metabolic process 2.44% (2/82) 8.38 9e-06 3.9e-05
GO:0046385 deoxyribose phosphate biosynthetic process 2.44% (2/82) 8.38 9e-06 3.9e-05
GO:0009215 purine deoxyribonucleoside triphosphate metabolic process 2.44% (2/82) 8.38 9e-06 3.9e-05
GO:0009216 purine deoxyribonucleoside triphosphate biosynthetic process 2.44% (2/82) 8.38 9e-06 3.9e-05
GO:0009263 deoxyribonucleotide biosynthetic process 2.44% (2/82) 8.38 9e-06 3.9e-05
GO:0009265 2'-deoxyribonucleotide biosynthetic process 2.44% (2/82) 8.38 9e-06 3.9e-05
GO:0046060 dATP metabolic process 2.44% (2/82) 8.38 9e-06 3.9e-05
GO:0006175 dATP biosynthetic process 2.44% (2/82) 8.38 9e-06 3.9e-05
GO:0006176 dATP biosynthetic process from ADP 2.44% (2/82) 8.38 9e-06 3.9e-05
GO:0015986 ATP synthesis coupled proton transport 3.66% (3/82) 6.16 9e-06 4e-05
GO:0015985 energy coupled proton transport, down electrochemical gradient 3.66% (3/82) 6.16 9e-06 4e-05
GO:0071840 cellular component organization or biogenesis 28.05% (23/82) 1.36 1.5e-05 6.6e-05
GO:0009773 photosynthetic electron transport in photosystem I 4.88% (4/82) 4.74 1.5e-05 6.6e-05
GO:1902600 proton transmembrane transport 3.66% (3/82) 5.8 2e-05 8.6e-05
GO:0006119 oxidative phosphorylation 2.44% (2/82) 7.8 2.7e-05 0.000105
GO:0042776 mitochondrial ATP synthesis coupled proton transport 2.44% (2/82) 7.8 2.7e-05 0.000105
GO:0009262 deoxyribonucleotide metabolic process 2.44% (2/82) 7.8 2.7e-05 0.000105
GO:0019692 deoxyribose phosphate metabolic process 2.44% (2/82) 7.8 2.7e-05 0.000105
GO:0009394 2'-deoxyribonucleotide metabolic process 2.44% (2/82) 7.8 2.7e-05 0.000105
GO:0009202 deoxyribonucleoside triphosphate biosynthetic process 2.44% (2/82) 7.8 2.7e-05 0.000105
GO:0009200 deoxyribonucleoside triphosphate metabolic process 2.44% (2/82) 7.8 2.7e-05 0.000105
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.88% (4/82) 4.55 2.6e-05 0.000109
GO:0044260 cellular macromolecule metabolic process 30.49% (25/82) 1.2 3.7e-05 0.000145
GO:0097747 RNA polymerase activity 4.88% (4/82) 4.41 3.9e-05 0.000151
GO:0034062 5'-3' RNA polymerase activity 4.88% (4/82) 4.41 3.9e-05 0.000151
GO:0016491 oxidoreductase activity 14.63% (12/82) 1.98 4.8e-05 0.000184
GO:0016043 cellular component organization 25.61% (21/82) 1.33 5.2e-05 0.000198
GO:0051082 unfolded protein binding 2.44% (2/82) 7.38 5.3e-05 0.000201
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism 3.66% (3/82) 5.32 5.7e-05 0.000213
GO:0016779 nucleotidyltransferase activity 6.1% (5/82) 3.56 6.9e-05 0.000258
GO:1990542 mitochondrial transmembrane transport 2.44% (2/82) 6.8 0.000132 0.000489
GO:0003954 NADH dehydrogenase activity 3.66% (3/82) 4.8 0.000172 0.000633
GO:0009772 photosynthetic electron transport in photosystem II 2.44% (2/82) 6.58 0.000184 0.000673
GO:0048564 photosystem I assembly 2.44% (2/82) 6.38 0.000245 0.000884
GO:0009533 chloroplast stromal thylakoid 2.44% (2/82) 6.38 0.000245 0.000884
GO:0015078 proton transmembrane transporter activity 6.1% (5/82) 3.0 0.000409 0.001465
GO:0009145 purine nucleoside triphosphate biosynthetic process 6.1% (5/82) 2.98 0.000437 0.001542
GO:0009144 purine nucleoside triphosphate metabolic process 6.1% (5/82) 2.98 0.000437 0.001542
GO:0009141 nucleoside triphosphate metabolic process 6.1% (5/82) 2.98 0.000446 0.001555
GO:0009142 nucleoside triphosphate biosynthetic process 6.1% (5/82) 2.98 0.000446 0.001555
GO:0009167 purine ribonucleoside monophosphate metabolic process 6.1% (5/82) 2.93 0.000517 0.001767
GO:0009126 purine nucleoside monophosphate metabolic process 6.1% (5/82) 2.93 0.000517 0.001767
GO:0019829 cation-transporting ATPase activity 3.66% (3/82) 4.27 0.000515 0.00178
GO:0009123 nucleoside monophosphate metabolic process 6.1% (5/82) 2.91 0.00055 0.001855
GO:0009161 ribonucleoside monophosphate metabolic process 6.1% (5/82) 2.91 0.00055 0.001855
GO:0020037 heme binding 2.44% (2/82) 5.68 0.000676 0.00225
GO:0009654 photosystem II oxygen evolving complex 2.44% (2/82) 5.68 0.000676 0.00225
GO:0015077 monovalent inorganic cation transmembrane transporter activity 6.1% (5/82) 2.67 0.001156 0.003822
GO:0042625 ATPase coupled ion transmembrane transporter activity 3.66% (3/82) 3.86 0.001176 0.003839
GO:0022853 active ion transmembrane transporter activity 3.66% (3/82) 3.86 0.001176 0.003839
GO:0098662 inorganic cation transmembrane transport 3.66% (3/82) 3.84 0.001226 0.003977
GO:0006164 purine nucleotide biosynthetic process 6.1% (5/82) 2.63 0.001299 0.004188
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 2.44% (2/82) 5.21 0.001314 0.004209
GO:0098660 inorganic ion transmembrane transport 3.66% (3/82) 3.8 0.00133 0.004235
GO:0098655 cation transmembrane transport 3.66% (3/82) 3.78 0.001384 0.004381
GO:0030095 chloroplast photosystem II 2.44% (2/82) 5.14 0.001466 0.00461
GO:0072522 purine-containing compound biosynthetic process 6.1% (5/82) 2.59 0.001502 0.004695
GO:0009055 electron transfer activity 3.66% (3/82) 3.58 0.002071 0.006437
GO:0045259 proton-transporting ATP synthase complex 2.44% (2/82) 4.86 0.002152 0.006647
GO:0016469 proton-transporting two-sector ATPase complex 2.44% (2/82) 4.8 0.002343 0.007194
GO:0009150 purine ribonucleotide metabolic process 6.1% (5/82) 2.4 0.002657 0.00811
GO:0048038 quinone binding 1.22% (1/82) 8.38 0.002995 0.008881
GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core 1.22% (1/82) 8.38 0.002995 0.008881
GO:0045267 proton-transporting ATP synthase, catalytic core 1.22% (1/82) 8.38 0.002995 0.008881
GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity 1.22% (1/82) 8.38 0.002995 0.008881
GO:0015252 proton channel activity 1.22% (1/82) 8.38 0.002995 0.008881
GO:0034220 ion transmembrane transport 3.66% (3/82) 3.35 0.003208 0.009461
GO:0006163 purine nucleotide metabolic process 6.1% (5/82) 2.27 0.003859 0.011314
GO:0022890 inorganic cation transmembrane transporter activity 6.1% (5/82) 2.24 0.004199 0.012243
GO:0072521 purine-containing compound metabolic process 6.1% (5/82) 2.17 0.005114 0.014829
GO:0010319 stromule 2.44% (2/82) 4.17 0.005512 0.015894
GO:0140098 catalytic activity, acting on RNA 4.88% (4/82) 2.49 0.005649 0.016197
GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity 1.22% (1/82) 7.38 0.00598 0.016869
GO:0000313 organellar ribosome 1.22% (1/82) 7.38 0.00598 0.016869
GO:0009547 plastid ribosome 1.22% (1/82) 7.38 0.00598 0.016869
GO:0008324 cation transmembrane transporter activity 6.1% (5/82) 2.11 0.006098 0.017107
GO:0015672 monovalent inorganic cation transport 3.66% (3/82) 3.01 0.006188 0.017266
GO:0043168 anion binding 8.54% (7/82) 1.58 0.008889 0.024671
GO:0055085 transmembrane transport 4.88% (4/82) 2.29 0.009205 0.025413
GO:0009259 ribonucleotide metabolic process 6.1% (5/82) 1.9 0.011074 0.030409
GO:0009165 nucleotide biosynthetic process 6.1% (5/82) 1.84 0.013177 0.035993
GO:1901293 nucleoside phosphate biosynthetic process 6.1% (5/82) 1.83 0.013288 0.036108
GO:0009768 photosynthesis, light harvesting in photosystem I 1.22% (1/82) 6.06 0.014885 0.039215
GO:0016984 ribulose-bisphosphate carboxylase activity 1.22% (1/82) 6.06 0.014885 0.039215
GO:0015977 carbon fixation 1.22% (1/82) 6.06 0.014885 0.039215
GO:1901137 carbohydrate derivative biosynthetic process 7.32% (6/82) 1.6 0.014512 0.039228
GO:0043492 ATPase activity, coupled to movement of substances 3.66% (3/82) 2.55 0.014783 0.039547
GO:0042626 ATPase activity, coupled to transmembrane movement of substances 3.66% (3/82) 2.55 0.014783 0.039547
GO:0003964 RNA-directed DNA polymerase activity 1.22% (1/82) 5.8 0.017836 0.046516
GO:0009522 photosystem I 1.22% (1/82) 5.8 0.017836 0.046516
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_79 0.02 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_165 0.016 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_8 0.02 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_35 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_4 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_18 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_21 0.106 Gene family Compare
Oryza sativa HCCA cluster Cluster_30 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_60 0.037 Gene family Compare
Oryza sativa HCCA cluster Cluster_83 0.085 Gene family Compare
Oryza sativa HCCA cluster Cluster_89 0.062 Gene family Compare
Oryza sativa HCCA cluster Cluster_91 0.052 Gene family Compare
Oryza sativa HCCA cluster Cluster_139 0.077 Gene family Compare
Oryza sativa HCCA cluster Cluster_143 0.018 Gene family Compare
Oryza sativa HCCA cluster Cluster_157 0.061 Gene family Compare
Oryza sativa HCCA cluster Cluster_188 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_213 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_243 0.128 Gene family Compare
Oryza sativa HCCA cluster Cluster_326 0.074 Gene family Compare
Oryza sativa HCCA cluster Cluster_334 0.053 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_28 0.256 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_99 0.018 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_127 0.015 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_2 0.1 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_3 0.071 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_4 0.021 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_110 0.046 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_114 0.044 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_120 0.155 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_132 0.047 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_154 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_191 0.019 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_220 0.196 Gene family Compare
Vitis vinifera HCCA cluster Cluster_12 0.132 Gene family Compare
Vitis vinifera HCCA cluster Cluster_64 0.057 Gene family Compare
Vitis vinifera HCCA cluster Cluster_187 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_3 0.044 Gene family Compare
Sequences (82) (download table)

InterPro Domains

GO Terms

Family Terms